Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_015282.1
Length=174079
Score E
Sequences producing significant alignments: (Bits) Value
seq752 354 9e-93
seq1263 307 1e-78
seq2510 143 3e-29
seq587 100 3e-16
>seq752
Length=193215
Score = 354 bits (392), Expect = 9e-93
Identities = 489/678 (72%), Gaps = 6/678 (1%)
Strand=Plus/Minus
Query 165260 CTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACG 165319
|| ||||| ||| ||| | ||| | || || ||| |||| || || || || | ||
Sbjct 189612 CTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACT 189553
Query 165320 AGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGG-TGCAAACTTTCTTA-CTG 165377
||||||||||| || ||||| ||||||||| |||| || ||||| ||||||| | |
Sbjct 189552 TCATGGTATACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCG 189495
Query 165378 CGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTG 165437
| |||||||| ||||| || | | | | ||||| | || | || || |||||||
Sbjct 189494 CCGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTG 189435
Query 165438 AGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGC 165497
| || ||||| ||||| | ||| |||| | || || || ||| | ||||| || |
Sbjct 189434 AAGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTC 189375
Query 165498 TCCACGGGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTC 165556
||||||| |||||| ||||| ||||| ||| | ||||| ||||| | || || |||
Sbjct 189374 TCCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTG 189315
Query 165557 ATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGC 165616
|| | | || || || ||||| || || ||||||| ||| || ||||||||||||
Sbjct 189314 TTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCT 189256
Query 165617 GTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTC 165676
|| || || || || || || ||||| || ||||||| || || || ||| || ||
Sbjct 189255 GTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTA 189196
Query 165677 GCAGCAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCC 165736
|| || || || | ||| | || || | ||||| || ||||| ||||| ||||| ||
Sbjct 189195 GCGGCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCA 189136
Query 165737 TTTCATATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGT 165796
|||||||||||||| ||||| ||| | |||| | || |||| | || |||||||||
Sbjct 189135 TTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGT 189076
Query 165797 GTTACAGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTT 165856
| ||| ||||| |||||| | | | |||||||||| | ||||||||| ||| || |||
Sbjct 189075 GCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTT 189016
Query 165857 GACTCTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAG 165916
|| | || |||| |||||||| || |||||||| || || ||||| || ||||| ||
Sbjct 189015 AACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAA 188956
Query 165917 ATCTTCGGTATTGCGTTT 165934
||||| || |||| |||
Sbjct 188955 ATCTTTGGGGTTGCTTTT 188938
>seq1263
Length=120960
Score = 307 bits (340), Expect = 1e-78
Identities = 419/579 (72%), Gaps = 6/579 (1%)
Strand=Plus/Plus
Query 165271 TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGGTATAC 165330
||| ||| | ||| | || || ||| |||| || || || || | || ||||||||
Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865
Query 165331 TCACGGGTTGGCAAGTTCCTATCTGGAGGG-TGCAAACTTTCTTA-CTGCGGCAGTTTCT 165388
||| || ||||| ||||||||| |||| || ||||| ||||||| | || ||||||||
Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 54923
Query 165389 ACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGG 165448
||||| || | | | | ||||| | || | || ||||||||||| || |||||
Sbjct 54924 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGA 54983
Query 165449 GATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCT 165508
||||| | ||| |||| | || || || ||| | ||||| || |||||||| |||
Sbjct 54984 GATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCT 55043
Query 165509 TTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGGTATCCG 165567
|||| ||||| ||||| ||| | ||||| |||||| | || || ||| || | | ||
Sbjct 55044 TTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCG 55102
Query 165568 TCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCAT 165627
|| || ||||| || || ||||||| ||| || |||||||||||| || || || ||
Sbjct 55103 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 55162
Query 165628 CTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTT 165687
|| || || ||||| || ||||||| || || || ||| || || || || || ||
Sbjct 55163 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 55222
Query 165688 CAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATATGAT 165747
| ||| | || || | ||||| || ||||| ||||| ||||| || |||||||||||
Sbjct 55223 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 55282
Query 165748 GGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGA 165807
||| ||||| ||| | |||| | || |||| | || |||||||||| || |||||
Sbjct 55283 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGA 55342
Query 165808 GAATACTCTGTATCAAGATGGTGACGATGCAAATACTTT 165846
|||||| | | | |||||||||| | ||||||||| ||
Sbjct 55343 AAATACTTTATTTGAAGATGGTGATGCTGCAAATACATT 55381
>seq2510
Length=74850
Score = 143 bits (158), Expect = 3e-29
Identities = 139/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 166013 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAA 166072
||||| ||||| ||||| || || |||||||| | ||||| || ||| | ||||| |||
Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941
Query 166073 GACCCAGAGTTTGAAACCTTCTACACGAAAAACATTCTCTTGAATGAAGGTCTTCGTGCT 166132
|| || || ||||| || |||||||| ||||| ||||| || || |||||| ||||||||
Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881
Query 166133 TGGTTGGCACCAGTCGATCAACCGCATGAGAACTTTGTCTTCCCTGAAGAAGTTCTGCC 166191
||| |||| | ||||| || ||||| ||| || | |||||||| || ||||| ||
Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 56822
>seq587
Length=401750
Score = 100 bits (110), Expect = 3e-16
Identities = 120/163 (74%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 164609 CACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGG 164668
||| ||||| |||||||| || |||||||| |||||||| || | | ||| |||| ||
Sbjct 44408 CACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGG 44467
Query 164669 TCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTAT 164728
|||||| | || |||| || || || | || | | | || ||||||||||||||
Sbjct 44468 TCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAGTTAT 44527
Query 164729 GCACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTGCT 164771
||| || | ||| |||| ||||| || |||| || ||||||
Sbjct 44528 GCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556731484440360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |