Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq752 354 9e-93 seq1263 307 1e-78 seq2510 143 3e-29 seq587 100 3e-16 >seq752 Length=193215 Score = 354 bits (392), Expect = 9e-93 Identities = 489/678 (72%), Gaps = 6/678 (1%) Strand=Plus/Minus Query 165260 CTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACG 165319 || ||||| ||| ||| | ||| | || || ||| |||| || || || || | || Sbjct 189612 CTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACT 189553 Query 165320 AGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGG-TGCAAACTTTCTTA-CTG 165377 ||||||||||| || ||||| ||||||||| |||| || ||||| ||||||| | | Sbjct 189552 TCATGGTATACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCG 189495 Query 165378 CGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTG 165437 | |||||||| ||||| || | | | | ||||| | || | || || ||||||| Sbjct 189494 CCGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTG 189435 Query 165438 AGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGC 165497 | || ||||| ||||| | ||| |||| | || || || ||| | ||||| || | Sbjct 189434 AAGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTC 189375 Query 165498 TCCACGGGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTC 165556 ||||||| |||||| ||||| ||||| ||| | ||||| ||||| | || || ||| Sbjct 189374 TCCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTG 189315 Query 165557 ATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGC 165616 || | | || || || ||||| || || ||||||| ||| || |||||||||||| Sbjct 189314 TTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCT 189256 Query 165617 GTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTC 165676 || || || || || || || ||||| || ||||||| || || || ||| || || Sbjct 189255 GTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTA 189196 Query 165677 GCAGCAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCC 165736 || || || || | ||| | || || | ||||| || ||||| ||||| ||||| || Sbjct 189195 GCGGCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCA 189136 Query 165737 TTTCATATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGT 165796 |||||||||||||| ||||| ||| | |||| | || |||| | || ||||||||| Sbjct 189135 TTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGT 189076 Query 165797 GTTACAGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTT 165856 | ||| ||||| |||||| | | | |||||||||| | ||||||||| ||| || ||| Sbjct 189075 GCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTT 189016 Query 165857 GACTCTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAG 165916 || | || |||| |||||||| || |||||||| || || ||||| || ||||| || Sbjct 189015 AACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAA 188956 Query 165917 ATCTTCGGTATTGCGTTT 165934 ||||| || |||| ||| Sbjct 188955 ATCTTTGGGGTTGCTTTT 188938 >seq1263 Length=120960 Score = 307 bits (340), Expect = 1e-78 Identities = 419/579 (72%), Gaps = 6/579 (1%) Strand=Plus/Plus Query 165271 TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGGTATAC 165330 ||| ||| | ||| | || || ||| |||| || || || || | || |||||||| Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865 Query 165331 TCACGGGTTGGCAAGTTCCTATCTGGAGGG-TGCAAACTTTCTTA-CTGCGGCAGTTTCT 165388 ||| || ||||| ||||||||| |||| || ||||| ||||||| | || |||||||| Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 54923 Query 165389 ACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGG 165448 ||||| || | | | | ||||| | || | || ||||||||||| || ||||| Sbjct 54924 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGA 54983 Query 165449 GATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCT 165508 ||||| | ||| |||| | || || || ||| | ||||| || |||||||| ||| Sbjct 54984 GATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCT 55043 Query 165509 TTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGGTATCCG 165567 |||| ||||| ||||| ||| | ||||| |||||| | || || ||| || | | || Sbjct 55044 TTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCG 55102 Query 165568 TCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCAT 165627 || || ||||| || || ||||||| ||| || |||||||||||| || || || || Sbjct 55103 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 55162 Query 165628 CTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTT 165687 || || || ||||| || ||||||| || || || ||| || || || || || || Sbjct 55163 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 55222 Query 165688 CAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATATGAT 165747 | ||| | || || | ||||| || ||||| ||||| ||||| || ||||||||||| Sbjct 55223 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 55282 Query 165748 GGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGA 165807 ||| ||||| ||| | |||| | || |||| | || |||||||||| || ||||| Sbjct 55283 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGA 55342 Query 165808 GAATACTCTGTATCAAGATGGTGACGATGCAAATACTTT 165846 |||||| | | | |||||||||| | ||||||||| || Sbjct 55343 AAATACTTTATTTGAAGATGGTGATGCTGCAAATACATT 55381 >seq2510 Length=74850 Score = 143 bits (158), Expect = 3e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 166013 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAA 166072 ||||| ||||| ||||| || || |||||||| | ||||| || ||| | ||||| ||| Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941 Query 166073 GACCCAGAGTTTGAAACCTTCTACACGAAAAACATTCTCTTGAATGAAGGTCTTCGTGCT 166132 || || || ||||| || |||||||| ||||| ||||| || || |||||| |||||||| Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881 Query 166133 TGGTTGGCACCAGTCGATCAACCGCATGAGAACTTTGTCTTCCCTGAAGAAGTTCTGCC 166191 ||| |||| | ||||| || ||||| ||| || | |||||||| || ||||| || Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 56822 >seq587 Length=401750 Score = 100 bits (110), Expect = 3e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 164609 CACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGG 164668 ||| ||||| |||||||| || |||||||| |||||||| || | | ||| |||| || Sbjct 44408 CACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGG 44467 Query 164669 TCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTAT 164728 |||||| | || |||| || || || | || | | | || |||||||||||||| Sbjct 44468 TCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAGTTAT 44527 Query 164729 GCACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTGCT 164771 ||| || | ||| |||| ||||| || |||| || |||||| Sbjct 44528 GCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556731484440360