Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1263 183 4e-41 seq752 176 5e-39 seq2510 107 2e-18 seq587 89.7 6e-13 seq1519 84.2 3e-11 >seq1263 Length=120960 Score = 183 bits (202), Expect = 4e-41 Identities = 375/558 (67%), Gaps = 0/558 (0%) Strand=Plus/Plus Query 173025 TTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTCGTTACATCATGGTA 173084 |||||| || | || | || || ||||| ||| || ||||| || || |||||||| Sbjct 54803 TTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTA 54862 Query 173085 TACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTAACAGCAGCAGTCTC 173144 ||| ||||| | || ||| ||| | |||||| || || ||||| || ||||| || Sbjct 54863 TACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAATTTCTTAACCGCCGCAGTTTC 54922 Query 173145 CACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGACCTGAAGCACAAGG 173204 || |||| | | | | ||| | |||| || ||||| |||||||| ||||| Sbjct 54923 GACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGG 54982 Query 173205 TTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTTTGTAGCATTACATGGAGT 173264 || ||||||| ||| | || || || |||| ||||| || | || || | Sbjct 54983 AGATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGC 55042 Query 173265 CTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGCAGGACTTGTAGGCATCAG 173324 || ||||| |||||||| ||| | ||||| ||||| | || | ||| | | Sbjct 55043 TTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATTGCG 55102 Query 173325 ACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCATCTTTTTAAT 173384 |||||| || ||| |||||||||||||| || || || || | | || | || Sbjct 55103 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 55162 Query 173385 CTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCAGCAATCTT 173444 || |||||||| ||| |||||||||| || || || ||||| || || || || Sbjct 55163 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 55222 Query 173445 TCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACATGAT 173504 ||| | ||| | || | ||||| || || || |||||||| |||||||| ||||| Sbjct 55223 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 55282 Query 173505 GGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCATGGTGCAACAGTGCA 173564 ||| ||||| || || | || | || | ||||| || || |||||||| | || | Sbjct 55283 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGA 55342 Query 173565 GAACACATTGTATGAAGA 173582 || || || | |||||| Sbjct 55343 AAATACTTTATTTGAAGA 55360 >seq752 Length=193215 Score = 176 bits (194), Expect = 5e-39 Identities = 375/560 (67%), Gaps = 0/560 (0%) Strand=Plus/Minus Query 173023 CCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTCGTTACATCATGG 173082 |||||||| || | || | || || ||||| ||| || ||||| || || |||||| Sbjct 189606 CCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGG 189547 Query 173083 TATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTAACAGCAGCAGTC 173142 ||||| ||||| | || ||| ||| | |||||| || || ||||| || ||||| Sbjct 189546 TATACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAATTTCTTAACCGCCGCAGTT 189487 Query 173143 TCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGACCTGAAGCACAA 173202 || || |||| | | | | ||| | |||| || || || |||||||| ||| Sbjct 189486 TCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGAAGCCCAA 189427 Query 173203 GGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTTTGTAGCATTACATGGA 173262 || || ||||||| ||| | || || || |||| ||||| || | || || Sbjct 189426 GGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGC 189367 Query 173263 GTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGCAGGACTTGTAGGCATC 173322 || ||||| |||||||| ||| | ||||| |||| | || | ||| | Sbjct 189366 ACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGTTCAATTG 189307 Query 173323 AGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCATCTTTTTA 173382 ||||||| || ||| |||||||||||||| || || || || | | || | Sbjct 189306 CGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTG 189247 Query 173383 ATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCAGCAATC 173442 || || |||||||| ||| |||||||||| || || || ||||| || || || Sbjct 189246 ATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATA 189187 Query 173443 TTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACATG 173502 ||||| | ||| | || | ||||| || || || |||||||| |||||||| ||| Sbjct 189186 TTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATG 189127 Query 173503 ATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCATGGTGCAACAGTG 173562 ||||| ||||| || || | || | || | ||||| || || |||||||| || || Sbjct 189126 ATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGTA 189067 Query 173563 CAGAACACATTGTATGAAGA 173582 | || || || | |||||| Sbjct 189066 GAAAATACTTTATTTGAAGA 189047 >seq2510 Length=74850 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 173788 GTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCA 173847 || ||||| || || ||||| | || || ||||| | || || || || | ||||| Sbjct 57003 GTCGGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCG 56944 Query 173848 GAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGA 173907 |||||||| || || |||||||||||||| || ||||| ||| | || |||||||| | Sbjct 56943 GAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGT 56884 Query 173908 GCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTA 173967 || |||||| | || |||||| || ||||| ||| | |||| || || || || || Sbjct 56883 GCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTA 56824 Query 173968 CC 173969 || Sbjct 56823 CC 56822 >seq587 Length=401750 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 172638 TATCTGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGC 172697 |||| | || ||||| |||||||| || |||||||| ||||||||||| || || ||| Sbjct 44402 TATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAG 44461 Query 172698 TAACGGTAAGATTGTTCCTACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGA 172757 | | ||| | || ||| | | ||| || |||| | ||||| |||||||| Sbjct 44462 TCAAGGTCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGA 44521 Query 172758 AGTTATGCATGAAAGAAATGCACACAACTTCCCATTAGACCTTGCTTCT 172806 ||||||||||||| ||| | || ||||| || | ||||| ||| || Sbjct 44522 AGTTATGCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570 >seq1519 Length=169030 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 172180 TTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCT 172239 || |||||| | | ||||| ||| ||||||||||| |||| |||| || || Sbjct 82772 TTGGGTATGTGCCGCTGGATTGCTGTTGCATATTCAGCTTCTGTTGCAGCTGCTACCGCC 82713 Query 172240 GTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 172299 || ||| | | |||||| | ||||| || || |||||||||||||| |||| ||| Sbjct 82712 GTTTTCATGATCTATCCAATTGGTCATGGGAGTTTTTCTGATGGTATGCCTTTAGGAATC 82653 Query 172300 TCAGGTACGTTCAACTTTATG 172320 || |||| |||||||||||| Sbjct 82652 TCTAGTACTTTCAACTTTATG 82632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587847080077840