Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_015285.1
Length=174285
Score E
Sequences producing significant alignments: (Bits) Value
seq752 360 2e-94
seq1263 309 3e-79
seq587 89.7 6e-13
>seq752
Length=193215
Score = 360 bits (398), Expect = 2e-94
Identities = 486/669 (73%), Gaps = 6/669 (1%)
Strand=Plus/Minus
Query 163698 TGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTCGTTACGTCGTGGTACAC 163757
||| ||| | || | || |||||| |||| |||||||| || || || || ||||| ||
Sbjct 189601 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 189542
Query 163758 CCATGGACTGGCAACTTCCTATCTTGAGGG-TGCTAATTTTCTCACAGCGGCTGTGTCAA 163816
|||||| |||| | ||||||| | || || ||| ||||| | || || || || || |
Sbjct 189541 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTTCGA 189483
Query 163817 CGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAGGGC 163875
| ||||| | | | | ||||| || || || || || |||||||| || || ||
Sbjct 189482 CTCCTGCCAATAGTTTAGCACATTCG-TTGTTGTTACTATGAGGTCCTGAAGCCCAAGGA 189424
Query 163876 GATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGAGCC 163935
||||| || ||| |||| | || || || |||| ||||| || |||||||| |
Sbjct 189423 GATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCACT 189364
Query 163936 TTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCGC-CTGATTGGAATCAG 163994
|| | || || ||||| ||| | || ||| ||||||||||||| ||| || | | |
Sbjct 189363 TTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTG-TTCAATTGCG 189305
Query 163995 ACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCAT 164054
||| || ||||| || || ||||||| ||| |||||||| || ||| ||| || || ||
Sbjct 189304 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 189245
Query 164055 CTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCAATCTT 164114
|| || || ||||| || |||||||||| || || |||||| || || || || ||
Sbjct 189244 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 189185
Query 164115 CAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGAT 164174
||||| || | || | ||||| |||||||| ||||| |||||||| || ||||||||
Sbjct 189184 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 189125
Query 164175 GGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTCACAGTTGA 164234
||||||||| ||| || | |||| || |||||| ||||| || || | || || ||
Sbjct 189124 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGTAGA 189065
Query 164235 AAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACA 164294
|||||| || | ||||||||| || ||||| || || |||||| | | || ||
Sbjct 189064 AAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACCCA 189005
Query 164295 GGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGT 164354
| ||||| |||||||| |||||||| || |||||||| ||||| || ||||| || ||
Sbjct 189004 AGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGT 188945
Query 164355 TGCGTTTTC 164363
||| |||||
Sbjct 188944 TGCTTTTTC 188936
>seq1263
Length=120960
Score = 309 bits (342), Expect = 3e-79
Identities = 421/580 (73%), Gaps = 6/580 (1%)
Strand=Plus/Plus
Query 163698 TGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTCGTTACGTCGTGGTACAC 163757
||| ||| | || | || |||||| |||| |||||||| || || || || ||||| ||
Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865
Query 163758 CCATGGACTGGCAACTTCCTATCTTGAGGG-TGCTAATTTTCTCACAGCGGCTGTGTCAA 163816
|||||| |||| | ||||||| | || || ||| ||||| | || || || || || |
Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTTCGA 54924
Query 163817 CGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAGGGC 163875
| ||||| | | | | ||||| || || || || ||||||||||| || || ||
Sbjct 54925 CTCCTGCCAATAGTTTAGCACATTCG-TTGTTGTTACTATGGGGTCCTGAAGCCCAAGGA 54983
Query 163876 GATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGAGCC 163935
||||| || ||| |||| | || || || |||| ||||| || |||||||| ||
Sbjct 54984 GATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCT 55043
Query 163936 TTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTC-GCCTGATTGGAATCAG 163994
|| | || || ||||| ||| | || |||||||||||||||| | ||| || | | |
Sbjct 55044 TTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTG-TTCAATTGCG 55102
Query 163995 ACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCAT 164054
||| || ||||| || || ||||||| ||| |||||||| || ||| ||| || || ||
Sbjct 55103 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 55162
Query 164055 CTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCAATCTT 164114
|| || || ||||| || |||||||||| || || |||||| || || || || ||
Sbjct 55163 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 55222
Query 164115 CAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGAT 164174
||||| || | || | ||||| |||||||| ||||| |||||||| || ||||||||
Sbjct 55223 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 55282
Query 164175 GGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTCACAGTTGA 164234
||||||||| ||| || | |||| || |||||| ||||| || || | | || ||
Sbjct 55283 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGA 55342
Query 164235 AAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTT 164274
|||||| || | ||||||||| || ||||| || |||
Sbjct 55343 AAATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382
>seq587
Length=401750
Score = 89.7 bits (98), Expect = 6e-13
Identities = 117/162 (72%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 163210 ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 163269
|| ||||| |||||||| || |||||||| |||||||| || | ||||| |||| |||
Sbjct 44409 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGT 44468
Query 163270 CGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATG 163329
||||| | || || | || || || | || | || | |||||||||||||||
Sbjct 44469 CGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAGTTATG 44528
Query 163330 CACGAGCGCAATGCTCACAACTTCCCACTTGACCTGGCAGCT 163371
|| || | ||| |||| ||||| || | ||||| || |||
Sbjct 44529 CATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 557390455623800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |