Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_015286.1
Length=175230
Score E
Sequences producing significant alignments: (Bits) Value
seq752 338 7e-88
seq1263 302 5e-77
seq2510 163 3e-35
seq37 96.9 4e-15
seq98 84.2 2e-11
seq587 82.4 9e-11
>seq752
Length=193215
Score = 338 bits (374), Expect = 7e-88
Identities = 485/677 (72%), Gaps = 6/677 (1%)
Strand=Plus/Minus
Query 168549 CTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACG 168608
|| ||||| ||| ||| | ||| | || || ||| |||| || || | || || ||
Sbjct 189612 CTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACT 189553
Query 168609 AGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGC-GCAAACTTTCTTA-CTG 168666
||||||||||| || ||||| ||||||||| |||| || |||| ||||||| | |
Sbjct 189552 TCATGGTATACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCG 189495
Query 168667 CGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTG 168726
| |||||| ||||| || || | | | ||||| | || | || || |||||||
Sbjct 189494 CCGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTG 189435
Query 168727 AGGCACAAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGC 168786
| || ||||| ||||| | ||||| ||| | || || || ||| | ||||| || |
Sbjct 189434 AAGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTC 189375
Query 168787 TCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTC 168845
||||||| |||||| ||||| ||||| ||| | ||||| ||||||| || || |||
Sbjct 189374 TCCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTG 189315
Query 168846 ATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGC 168905
|| | | || || || ||||| || || ||||||| ||| || ||||||||||||
Sbjct 189314 TTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCT 189256
Query 168906 GTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTC 168965
|| || || || || || || ||||| || ||||||| || || || ||| || ||
Sbjct 189255 GTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTA 189196
Query 168966 TCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCA 169025
| || || || |||||| | || || | ||||| || ||||| |||||| |||| |||
Sbjct 189195 GCGGCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCA 189136
Query 169026 TTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGT 169085
|||||||||||||| || || ||| | ||||| | || |||| | || || ||||||
Sbjct 189135 TTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGT 189076
Query 169086 GTTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTT 169145
| ||| ||||| |||||| | | | |||||||||| |||||||| ||| || |||
Sbjct 189075 GCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTT 189016
Query 169146 GACAGCACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAG 169205
|| || || | || || || ||||||||||| || || ||||| || ||||| ||
Sbjct 189015 AACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAA 188956
Query 169206 ATCTTTGGTATTGCGTT 169222
|||||||| |||| ||
Sbjct 188955 ATCTTTGGGGTTGCTTT 188939
>seq1263
Length=120960
Score = 302 bits (334), Expect = 5e-77
Identities = 418/579 (72%), Gaps = 6/579 (1%)
Strand=Plus/Plus
Query 168560 TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGGTATAC 168619
||| ||| | ||| | || || ||| |||| || || | || || || ||||||||
Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865
Query 168620 TCACGGGTTGGCAAGTTCCTATCTGGAGGGC-GCAAACTTTCTTA-CTGCGGCAGTTAGT 168677
||| || ||||| ||||||||| |||| || |||| ||||||| | || ||||||
Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 54923
Query 168678 ACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAAGGG 168737
||||| || || | | | ||||| | || | || ||||||||||| || |||||
Sbjct 54924 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGA 54983
Query 168738 GATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCT 168797
||||| | ||||| ||| | || || || ||| | ||||| || |||||||| |||
Sbjct 54984 GATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCT 55043
Query 168798 TTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCG 168856
|||| ||||| ||||| ||| | ||||| |||||||| || || ||| || | | ||
Sbjct 55044 TTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCG 55102
Query 168857 TCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCAT 168916
|| || ||||| || || ||||||| ||| || |||||||||||| || || || ||
Sbjct 55103 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 55162
Query 168917 CTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTT 168976
|| || || ||||| || ||||||| || || || ||| || || | || || ||
Sbjct 55163 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 55222
Query 168977 CCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATATGAT 169036
|||||| | || || | ||||| || ||||| |||||| |||| ||||||||||||||
Sbjct 55223 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 55282
Query 169037 GGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGA 169096
||| || || ||| | ||||| | || |||| | || || ||||||| || |||||
Sbjct 55283 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGA 55342
Query 169097 GAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTT 169135
|||||| | | | |||||||||| |||||||| ||
Sbjct 55343 AAATACTTTATTTGAAGATGGTGATGCTGCAAATACATT 55381
>seq2510
Length=74850
Score = 163 bits (180), Expect = 3e-35
Identities = 149/188 (79%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 169302 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAA 169361
||||| ||||| ||||| || || |||||||| ||||||| || ||| | ||||| |||
Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941
Query 169362 GATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCA 169421
||||| || |||||||| ||||||||||| || || || || ||||||||| |||||||
Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881
Query 169422 TGGTTAGCACCTATTGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCC 169481
||| | || || ||||| |||||||| ||| || | ||||||||||| || || |||
Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 56821
Query 169482 CGAGGTAA 169489
|| || ||
Sbjct 56820 CGTGGAAA 56813
>seq37
Length=530226
Score = 96.9 bits (106), Expect = 4e-15
Identities = 154/216 (71%), Gaps = 5/216 (2%)
Strand=Plus/Plus
Query 169164 GAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCGTTC 169223
|| || ||||||||||| || || ||||| || ||||| || |||||||| || ||
Sbjct 49875 GAAACTTATTCAATGGTCACCGCTAACCGCTT-TGGTCCCAAATCTTTGGGGTTTTTTTT 49933
Query 169224 AGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACA 169283
||||| | ||||| ||||| |||||| ||||| | || | ||| | ||||
Sbjct 49934 TCCAATAAATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACCGGTTTATGGATG 49993
Query 169284 AGTTC-CATCGGTATTATT-GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCC 169341
|| | | | | | || | ||||| ||| | ||||| || | |||| ||| |||||||
Sbjct 49994 AGAGCTCCTAG--AGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGCTTCGTTTCCC 50051
Query 169342 AAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGA 169377
|||| ||| | ||||| |||||||| || ||| |||
Sbjct 50052 AAGAAATCTGTGCAGCGGAAGATCCTGAATTTAAGA 50087
>seq98
Length=412963
Score = 84.2 bits (92), Expect = 2e-11
Identities = 196/292 (67%), Gaps = 3/292 (1%)
Strand=Plus/Minus
Query 167106 AGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCTACGTTGCTT 167165
|| ||||| |||| | | || | || || || || ||||| || ||| ||| || |
Sbjct 211697 AGTACTAAAAACCATTTTTACATAGGATGATTTGGTGTTCTAATAATCTCTATTTTATTA 211638
Query 167166 GCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGACATCGATGG 167224
| ||||| | ||| ||||| || |||||| | | | || || | ||| | ||||
Sbjct 211637 AC-GCAACTTT-TGTATTCATTATTGCCTTCATTGCTACTACTTCAAGGGATTTTTATGG 211580
Query 167225 TATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGT 167284
||| | ||| ||| || | || || | ||||| ||||| || || | || |
Sbjct 211579 TATTCATGAATTTGTTTCTAGGTCCCTATTTTATGGCAACAATATTATTTTCTATGTCAT 211520
Query 167285 TGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAACCCT 167344
| ||||| ||| | ||||| ||| | ||||| || || |||| ||| ||| || |
Sbjct 211519 TATTCCTACTTTTGCAGCTATAGGTTTGCACTTTTACCCAATCTAAAAAGTGGCATCCGT 211460
Query 167345 CGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTC 167396
|| |||||||| |||||||||||||||| | || | ||| ||| ||||
Sbjct 211459 TGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTCCTCTTC 211408
>seq587
Length=401750
Score = 82.4 bits (90), Expect = 9e-11
Identities = 110/153 (72%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 167922 TTCAACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTG 167981
|||||||| || |||||||| |||||||| ||| | |||||||| ||| || |
Sbjct 44418 TTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATT 44477
Query 167982 CCTACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGT 168041
||||| || || | | || | || | || ||||||||||||||||| || | |
Sbjct 44478 AATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAGTTATGCATGAACAT 44537
Query 168042 AATGCTCACAACTTCCCTCTCGACCTTGCTGCT 168074
||| |||| ||||| || | ||||| ||||||
Sbjct 44538 AATACTCATAACTTTCCCATGGACCTAGCTGCT 44570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 560413405955600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |