Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq752 338 7e-88 seq1263 302 5e-77 seq2510 163 3e-35 seq37 96.9 4e-15 seq98 84.2 2e-11 seq587 82.4 9e-11 >seq752 Length=193215 Score = 338 bits (374), Expect = 7e-88 Identities = 485/677 (72%), Gaps = 6/677 (1%) Strand=Plus/Minus Query 168549 CTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACG 168608 || ||||| ||| ||| | ||| | || || ||| |||| || || | || || || Sbjct 189612 CTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACT 189553 Query 168609 AGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGC-GCAAACTTTCTTA-CTG 168666 ||||||||||| || ||||| ||||||||| |||| || |||| ||||||| | | Sbjct 189552 TCATGGTATACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCG 189495 Query 168667 CGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTG 168726 | |||||| ||||| || || | | | ||||| | || | || || ||||||| Sbjct 189494 CCGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTG 189435 Query 168727 AGGCACAAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGC 168786 | || ||||| ||||| | ||||| ||| | || || || ||| | ||||| || | Sbjct 189434 AAGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTC 189375 Query 168787 TCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTC 168845 ||||||| |||||| ||||| ||||| ||| | ||||| ||||||| || || ||| Sbjct 189374 TCCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTG 189315 Query 168846 ATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGC 168905 || | | || || || ||||| || || ||||||| ||| || |||||||||||| Sbjct 189314 TTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCT 189256 Query 168906 GTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTC 168965 || || || || || || || ||||| || ||||||| || || || ||| || || Sbjct 189255 GTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTA 189196 Query 168966 TCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCA 169025 | || || || |||||| | || || | ||||| || ||||| |||||| |||| ||| Sbjct 189195 GCGGCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCA 189136 Query 169026 TTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGT 169085 |||||||||||||| || || ||| | ||||| | || |||| | || || |||||| Sbjct 189135 TTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGT 189076 Query 169086 GTTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTT 169145 | ||| ||||| |||||| | | | |||||||||| |||||||| ||| || ||| Sbjct 189075 GCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTT 189016 Query 169146 GACAGCACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAG 169205 || || || | || || || ||||||||||| || || ||||| || ||||| || Sbjct 189015 AACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAA 188956 Query 169206 ATCTTTGGTATTGCGTT 169222 |||||||| |||| || Sbjct 188955 ATCTTTGGGGTTGCTTT 188939 >seq1263 Length=120960 Score = 302 bits (334), Expect = 5e-77 Identities = 418/579 (72%), Gaps = 6/579 (1%) Strand=Plus/Plus Query 168560 TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGGTATAC 168619 ||| ||| | ||| | || || ||| |||| || || | || || || |||||||| Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865 Query 168620 TCACGGGTTGGCAAGTTCCTATCTGGAGGGC-GCAAACTTTCTTA-CTGCGGCAGTTAGT 168677 ||| || ||||| ||||||||| |||| || |||| ||||||| | || |||||| Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 54923 Query 168678 ACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAAGGG 168737 ||||| || || | | | ||||| | || | || ||||||||||| || ||||| Sbjct 54924 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGA 54983 Query 168738 GATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCT 168797 ||||| | ||||| ||| | || || || ||| | ||||| || |||||||| ||| Sbjct 54984 GATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCT 55043 Query 168798 TTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCG 168856 |||| ||||| ||||| ||| | ||||| |||||||| || || ||| || | | || Sbjct 55044 TTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCG 55102 Query 168857 TCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCAT 168916 || || ||||| || || ||||||| ||| || |||||||||||| || || || || Sbjct 55103 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 55162 Query 168917 CTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTT 168976 || || || ||||| || ||||||| || || || ||| || || | || || || Sbjct 55163 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 55222 Query 168977 CCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATATGAT 169036 |||||| | || || | ||||| || ||||| |||||| |||| |||||||||||||| Sbjct 55223 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 55282 Query 169037 GGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGA 169096 ||| || || ||| | ||||| | || |||| | || || ||||||| || ||||| Sbjct 55283 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGA 55342 Query 169097 GAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTT 169135 |||||| | | | |||||||||| |||||||| || Sbjct 55343 AAATACTTTATTTGAAGATGGTGATGCTGCAAATACATT 55381 >seq2510 Length=74850 Score = 163 bits (180), Expect = 3e-35 Identities = 149/188 (79%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 169302 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAA 169361 ||||| ||||| ||||| || || |||||||| ||||||| || ||| | ||||| ||| Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941 Query 169362 GATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCA 169421 ||||| || |||||||| ||||||||||| || || || || ||||||||| ||||||| Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881 Query 169422 TGGTTAGCACCTATTGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCC 169481 ||| | || || ||||| |||||||| ||| || | ||||||||||| || || ||| Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 56821 Query 169482 CGAGGTAA 169489 || || || Sbjct 56820 CGTGGAAA 56813 >seq37 Length=530226 Score = 96.9 bits (106), Expect = 4e-15 Identities = 154/216 (71%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 169164 GAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCGTTC 169223 || || ||||||||||| || || ||||| || ||||| || |||||||| || || Sbjct 49875 GAAACTTATTCAATGGTCACCGCTAACCGCTT-TGGTCCCAAATCTTTGGGGTTTTTTTT 49933 Query 169224 AGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACA 169283 ||||| | ||||| ||||| |||||| ||||| | || | ||| | |||| Sbjct 49934 TCCAATAAATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACCGGTTTATGGATG 49993 Query 169284 AGTTC-CATCGGTATTATT-GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCC 169341 || | | | | | || | ||||| ||| | ||||| || | |||| ||| ||||||| Sbjct 49994 AGAGCTCCTAG--AGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGCTTCGTTTCCC 50051 Query 169342 AAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGA 169377 |||| ||| | ||||| |||||||| || ||| ||| Sbjct 50052 AAGAAATCTGTGCAGCGGAAGATCCTGAATTTAAGA 50087 >seq98 Length=412963 Score = 84.2 bits (92), Expect = 2e-11 Identities = 196/292 (67%), Gaps = 3/292 (1%) Strand=Plus/Minus Query 167106 AGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCTACGTTGCTT 167165 || ||||| |||| | | || | || || || || ||||| || ||| ||| || | Sbjct 211697 AGTACTAAAAACCATTTTTACATAGGATGATTTGGTGTTCTAATAATCTCTATTTTATTA 211638 Query 167166 GCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGACATCGATGG 167224 | ||||| | ||| ||||| || |||||| | | | || || | ||| | |||| Sbjct 211637 AC-GCAACTTT-TGTATTCATTATTGCCTTCATTGCTACTACTTCAAGGGATTTTTATGG 211580 Query 167225 TATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGT 167284 ||| | ||| ||| || | || || | ||||| ||||| || || | || | Sbjct 211579 TATTCATGAATTTGTTTCTAGGTCCCTATTTTATGGCAACAATATTATTTTCTATGTCAT 211520 Query 167285 TGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAACCCT 167344 | ||||| ||| | ||||| ||| | ||||| || || |||| ||| ||| || | Sbjct 211519 TATTCCTACTTTTGCAGCTATAGGTTTGCACTTTTACCCAATCTAAAAAGTGGCATCCGT 211460 Query 167345 CGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTC 167396 || |||||||| |||||||||||||||| | || | ||| ||| |||| Sbjct 211459 TGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTCCTCTTC 211408 >seq587 Length=401750 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 167922 TTCAACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTG 167981 |||||||| || |||||||| |||||||| ||| | |||||||| ||| || | Sbjct 44418 TTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATT 44477 Query 167982 CCTACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGT 168041 ||||| || || | | || | || | || ||||||||||||||||| || | | Sbjct 44478 AATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAGTTATGCATGAACAT 44537 Query 168042 AATGCTCACAACTTCCCTCTCGACCTTGCTGCT 168074 ||| |||| ||||| || | ||||| |||||| Sbjct 44538 AATACTCATAACTTTCCCATGGACCTAGCTGCT 44570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560413405955600