Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_015288.1
Length=191195
Score E
Sequences producing significant alignments: (Bits) Value
seq752 381 7e-101
seq1263 336 3e-87
seq587 114 2e-20
seq2510 107 2e-18
>seq752
Length=193215
Score = 381 bits (422), Expect = 7e-101
Identities = 490/669 (73%), Gaps = 10/669 (1%)
Strand=Plus/Minus
Query 183258 TGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGGTATAC 183317
||| ||| | || | || || ||| |||| || ||| | ||||| || ||||||||
Sbjct 189601 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 189542
Query 183318 CCATGGACTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGCTGTCTCG 183375
|||||| | ||| ||||||| | ||||| ||| | ||||||| | || || || |||
Sbjct 189541 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 189484
Query 183376 ACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCAAGGG 183435
|| ||||| | | | | ||||| | ||||||| || |||||||| | |||||
Sbjct 189483 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGAAGCCCAAGGA 189424
Query 183436 GACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGTGCC 183495
|| || || ||||||||| | || || || |||| ||||| || |||||||| |
Sbjct 189423 GATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCACT 189364
Query 183496 TTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATCCGT 183555
|| | || || ||||| ||| | || || ||||||||||||| | || | ||
Sbjct 189363 TTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGTTCAATTGCGA 189304
Query 183556 CCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATC 183615
||||| ||||| || || ||||||| ||| |||||||||||||| ||||||||| ||
Sbjct 189303 CCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATT 189244
Query 183616 TATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTT 183675
|||||||| ||||||||| ||||||||||| || ||||| || ||||| || || |||
Sbjct 189243 TATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTT 189184
Query 183676 AGATTC---CTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATG 183732
||||| || || |||| |||||||| | || ||||| || ||||| || ||||||
Sbjct 189183 CGATTCATCCTTTTTTTCCA--AGGGTTTC-ATAATTGGACATTGAACCCATTTCATATG 189127
Query 183733 ATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTA 183792
||||||||||| ||| || | || | || || || | ||||||||||||| || |||
Sbjct 189126 ATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGTA 189067
Query 183793 GAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCACT 183852
|| ||||| || | ||||||||| || ||||| |||||| || ||| | | ||
Sbjct 189066 GAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACC 189007
Query 183853 CAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGGG 183912
|||| ||||| || ||||| ||||| || || || || || ||||| |||||||| |||
Sbjct 189006 CAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGG 188947
Query 183913 GTTGCGTTT 183921
||||| |||
Sbjct 188946 GTTGCTTTT 188938
>seq1263
Length=120960
Score = 336 bits (372), Expect = 3e-87
Identities = 427/581 (73%), Gaps = 10/581 (2%)
Strand=Plus/Plus
Query 183258 TGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGGTATAC 183317
||| ||| | || | || || ||| |||| || ||| | ||||| || ||||||||
Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865
Query 183318 CCATGGACTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGCTGTCTCG 183375
|||||| | ||| ||||||| | ||||| ||| | ||||||| | || || || |||
Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 54923
Query 183376 ACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCAAGGG 183435
|| ||||| | | | | ||||| | ||||||| ||||||||||| | |||||
Sbjct 54924 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGA 54983
Query 183436 GACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGTGCC 183495
|| || || ||||||||| | || || || |||| ||||| || |||||||| ||
Sbjct 54984 GATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCT 55043
Query 183496 TTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATCCGT 183555
|| | || || ||||| ||| | || || |||||||||||||| | || | ||
Sbjct 55044 TTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATTGCGA 55103
Query 183556 CCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATC 183615
||||| ||||| || || ||||||| ||| |||||||||||||| ||||||||| ||
Sbjct 55104 CCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATT 55163
Query 183616 TATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTT 183675
|||||||| ||||||||| ||||||||||| || ||||| || ||||| || || |||
Sbjct 55164 TATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTT 55223
Query 183676 AGAT---TCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATG 183732
||| |||| || |||| ||||||| || || ||||| || ||||| || ||||||
Sbjct 55224 CGATTCATCCTTTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCATTTCATATG 55280
Query 183733 ATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTA 183792
||||||||||| ||| || | || | || || || | ||||||||||||| | |||
Sbjct 55281 ATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTA 55340
Query 183793 GAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATT 183833
|| ||||| || | ||||||||| || ||||| |||||
Sbjct 55341 GAAAATACTTTATTTGAAGATGGTGATGCTGCAAATACATT 55381
>seq587
Length=401750
Score = 114 bits (126), Expect = 2e-20
Identities = 123/163 (75%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 182618 CACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGG 182677
||| ||||| |||||||| || |||||||| |||||||| || | ||||| |||| ||
Sbjct 44408 CACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGG 44467
Query 182678 TCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTAT 182737
|||||| |||| |||| || ||| | | || | || | |||||||||||||||||
Sbjct 44468 TCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAGTTAT 44527
Query 182738 GCATGAGCGTAACGCACACAACTTCCCACTAGATCTTGCTGCT 182780
|||||| | ||| | || ||||| || | || || ||||||
Sbjct 44528 GCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570
>seq2510
Length=74850
Score = 107 bits (118), Expect = 2e-18
Identities = 131/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 184000 GGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAA 184059
|| || ||||| || || || || ||||| || | || || ||| | ||||| |||
Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941
Query 184060 GATCCAGAATTTGAGACGTTCTACACAAAGAACATACTTCTTAATGAAGGACTACGTGCA 184119
||||| ||||||||||| |||||||| || || || ||| | || ||||| | |||||
Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881
Query 184120 TGGTTAGCACCTTCTGATCAACCACATGAGAATTTTATATTTCCAGAGGAGGTATTACC 184178
||| | || || ||||| || ||||| || ||||||| || |||||||| ||||
Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 56822
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 611483672672200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |