Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq752 381 7e-101 seq1263 336 3e-87 seq587 114 2e-20 seq2510 107 2e-18 >seq752 Length=193215 Score = 381 bits (422), Expect = 7e-101 Identities = 490/669 (73%), Gaps = 10/669 (1%) Strand=Plus/Minus Query 183258 TGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGGTATAC 183317 ||| ||| | || | || || ||| |||| || ||| | ||||| || |||||||| Sbjct 189601 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 189542 Query 183318 CCATGGACTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGCTGTCTCG 183375 |||||| | ||| ||||||| | ||||| ||| | ||||||| | || || || ||| Sbjct 189541 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 189484 Query 183376 ACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCAAGGG 183435 || ||||| | | | | ||||| | ||||||| || |||||||| | ||||| Sbjct 189483 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGAAGCCCAAGGA 189424 Query 183436 GACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGTGCC 183495 || || || ||||||||| | || || || |||| ||||| || |||||||| | Sbjct 189423 GATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCACT 189364 Query 183496 TTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATCCGT 183555 || | || || ||||| ||| | || || ||||||||||||| | || | || Sbjct 189363 TTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGTTCAATTGCGA 189304 Query 183556 CCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATC 183615 ||||| ||||| || || ||||||| ||| |||||||||||||| ||||||||| || Sbjct 189303 CCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATT 189244 Query 183616 TATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTT 183675 |||||||| ||||||||| ||||||||||| || ||||| || ||||| || || ||| Sbjct 189243 TATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTT 189184 Query 183676 AGATTC---CTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATG 183732 ||||| || || |||| |||||||| | || ||||| || ||||| || |||||| Sbjct 189183 CGATTCATCCTTTTTTTCCA--AGGGTTTC-ATAATTGGACATTGAACCCATTTCATATG 189127 Query 183733 ATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTA 183792 ||||||||||| ||| || | || | || || || | ||||||||||||| || ||| Sbjct 189126 ATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGTA 189067 Query 183793 GAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCACT 183852 || ||||| || | ||||||||| || ||||| |||||| || ||| | | || Sbjct 189066 GAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACC 189007 Query 183853 CAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGGG 183912 |||| ||||| || ||||| ||||| || || || || || ||||| |||||||| ||| Sbjct 189006 CAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGG 188947 Query 183913 GTTGCGTTT 183921 ||||| ||| Sbjct 188946 GTTGCTTTT 188938 >seq1263 Length=120960 Score = 336 bits (372), Expect = 3e-87 Identities = 427/581 (73%), Gaps = 10/581 (2%) Strand=Plus/Plus Query 183258 TGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGGTATAC 183317 ||| ||| | || | || || ||| |||| || ||| | ||||| || |||||||| Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865 Query 183318 CCATGGACTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGCTGTCTCG 183375 |||||| | ||| ||||||| | ||||| ||| | ||||||| | || || || ||| Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 54923 Query 183376 ACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCAAGGG 183435 || ||||| | | | | ||||| | ||||||| ||||||||||| | ||||| Sbjct 54924 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGA 54983 Query 183436 GACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGTGCC 183495 || || || ||||||||| | || || || |||| ||||| || |||||||| || Sbjct 54984 GATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCT 55043 Query 183496 TTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATCCGT 183555 || | || || ||||| ||| | || || |||||||||||||| | || | || Sbjct 55044 TTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATTGCGA 55103 Query 183556 CCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATC 183615 ||||| ||||| || || ||||||| ||| |||||||||||||| ||||||||| || Sbjct 55104 CCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATT 55163 Query 183616 TATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTT 183675 |||||||| ||||||||| ||||||||||| || ||||| || ||||| || || ||| Sbjct 55164 TATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTT 55223 Query 183676 AGAT---TCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATG 183732 ||| |||| || |||| ||||||| || || ||||| || ||||| || |||||| Sbjct 55224 CGATTCATCCTTTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCATTTCATATG 55280 Query 183733 ATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTA 183792 ||||||||||| ||| || | || | || || || | ||||||||||||| | ||| Sbjct 55281 ATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTA 55340 Query 183793 GAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATT 183833 || ||||| || | ||||||||| || ||||| ||||| Sbjct 55341 GAAAATACTTTATTTGAAGATGGTGATGCTGCAAATACATT 55381 >seq587 Length=401750 Score = 114 bits (126), Expect = 2e-20 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 182618 CACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGG 182677 ||| ||||| |||||||| || |||||||| |||||||| || | ||||| |||| || Sbjct 44408 CACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGG 44467 Query 182678 TCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTAT 182737 |||||| |||| |||| || ||| | | || | || | ||||||||||||||||| Sbjct 44468 TCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAGTTAT 44527 Query 182738 GCATGAGCGTAACGCACACAACTTCCCACTAGATCTTGCTGCT 182780 |||||| | ||| | || ||||| || | || || |||||| Sbjct 44528 GCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570 >seq2510 Length=74850 Score = 107 bits (118), Expect = 2e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 184000 GGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAA 184059 || || ||||| || || || || ||||| || | || || ||| | ||||| ||| Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941 Query 184060 GATCCAGAATTTGAGACGTTCTACACAAAGAACATACTTCTTAATGAAGGACTACGTGCA 184119 ||||| ||||||||||| |||||||| || || || ||| | || ||||| | ||||| Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881 Query 184120 TGGTTAGCACCTTCTGATCAACCACATGAGAATTTTATATTTCCAGAGGAGGTATTACC 184178 ||| | || || ||||| || ||||| || ||||||| || |||||||| |||| Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 56822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611483672672200