Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_015289.1
Length=176184
Score E
Sequences producing significant alignments: (Bits) Value
seq752 347 1e-90
seq1263 298 6e-76
seq1519 114 1e-20
seq587 111 2e-19
seq37 104 3e-17
seq98 93.3 5e-14
seq5090 87.8 2e-12
seq2140 82.4 9e-11
>seq752
Length=193215
Score = 347 bits (384), Expect = 1e-90
Identities = 481/667 (72%), Gaps = 6/667 (1%)
Strand=Plus/Minus
Query 166238 TGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATAC 166297
||| ||| | ||| | || || ||| | || || || || || || || ||||||||
Sbjct 189601 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 189542
Query 166298 TCATGGACTCGCAAGCAGTTATCTGGAGGG-TGCAAACTTTCTTA-CTGCGGCAGTTTCT 166355
||||||| | || || ||| |||| || ||||| ||||||| | || ||||||||
Sbjct 189541 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 189484
Query 166356 ACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGG 166415
||||| || || | | | ||||| | | | || || |||||||| || |||||
Sbjct 189483 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGAAGCCCAAGGA 189424
Query 166416 GATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCT 166475
||||| | ||||||||| | || || || ||| | ||||||||||||||||| ||
Sbjct 189423 GATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCACT 189364
Query 166476 TTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCG 166534
|| | ||||| ||||| ||| | || || ||||| | ||||| ||| | | | ||
Sbjct 189363 TTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGTTCAAT-TGCG 189305
Query 166535 TCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCAT 166594
|| || ||||||||||| || |||| ||| |||||||| || ||| ||| || || ||
Sbjct 189304 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 189245
Query 166595 CTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTT 166654
|| || || ||||| || ||||||| || || || ||| || || | || || ||
Sbjct 189244 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 189185
Query 166655 CCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGAT 166714
|||||| ||||||| | ||||| || || || |||||| |||||||||||||||||||
Sbjct 189184 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 189125
Query 166715 GGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGA 166774
||| || || ||| | | || | || |||| | || |||||||||| ||| |||||
Sbjct 189124 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGTAGA 189065
Query 166775 GAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCA 166834
|| ||| | | | |||||||||| |||||||| ||| || || || | || ||
Sbjct 189064 AAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACCCA 189005
Query 166835 AGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTAT 166894
|| |||||||| ||||||||||| || || ||||||| |||||| || ||||| || |
Sbjct 189004 AGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGT 188945
Query 166895 TGCGTTT 166901
||| |||
Sbjct 188944 TGCTTTT 188938
>seq1263
Length=120960
Score = 298 bits (330), Expect = 6e-76
Identities = 417/579 (72%), Gaps = 6/579 (1%)
Strand=Plus/Plus
Query 166238 TGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATAC 166297
||| ||| | ||| | || || ||| | || || || || || || || ||||||||
Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865
Query 166298 TCATGGACTCGCAAGCAGTTATCTGGAGGG-TGCAAACTTTCTTA-CTGCGGCAGTTTCT 166355
||||||| | || || ||| |||| || ||||| ||||||| | || ||||||||
Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 54923
Query 166356 ACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGG 166415
||||| || || | | | ||||| | | | || ||||||||||| || |||||
Sbjct 54924 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGA 54983
Query 166416 GATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCT 166475
||||| | ||||||||| | || || || ||| | ||||||||||||||||| |||
Sbjct 54984 GATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCT 55043
Query 166476 TTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCG 166534
|| | ||||| ||||| ||| | || || |||||| | ||||| ||| | | | ||
Sbjct 55044 TTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCG 55102
Query 166535 TCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCAT 166594
|| || ||||||||||| || |||| ||| |||||||| || ||| ||| || || ||
Sbjct 55103 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 55162
Query 166595 CTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTT 166654
|| || || ||||| || ||||||| || || || ||| || || | || || ||
Sbjct 55163 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 55222
Query 166655 CCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGAT 166714
|||||| ||||||| | ||||| || || || |||||| |||||||||||||||||||
Sbjct 55223 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 55282
Query 166715 GGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGA 166774
||| || || ||| | | || | || |||| | || |||||||||| || |||||
Sbjct 55283 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGA 55342
Query 166775 GAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTT 166813
|| ||| | | | |||||||||| |||||||| ||
Sbjct 55343 AAATACTTTATTTGAAGATGGTGATGCTGCAAATACATT 55381
>seq1519
Length=169030
Score = 114 bits (126), Expect = 1e-20
Identities = 108/138 (78%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 165127 GGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTT 165186
|||||| | | |||||| || |||||| || |||| || |||||| |||| |||
Sbjct 82769 GGTATGTGCCGCTGGATTGCTGTTGCATATTCAGCTTCTGTTGCAGCTGCTACCGCCGTT 82710
Query 165187 TTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCT 165246
||| || ||||||| | ||||| |||||||| ||||||||||||||| | || ||||||
Sbjct 82709 TTCATGATCTATCCAATTGGTCATGGGAGTTTTTCTGATGGTATGCCTTTAGGAATCTCT 82650
Query 165247 GGTACTTTTAACTATATG 165264
||||||| |||| ||||
Sbjct 82649 AGTACTTTCAACTTTATG 82632
>seq587
Length=401750
Score = 111 bits (122), Expect = 2e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 165570 CACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 165629
|| |||| | | | | ||||| ||||| |||||||| || |||||||| |||||||| ||
Sbjct 44390 CATTGCTTTAGATATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 44449
Query 165630 TATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAACCGTGCTGG 165689
| | ||||||||||| | || ||||| ||||| || | || | || |
Sbjct 44450 TGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAA 44509
Query 165690 TCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCTCGCTGC 165749
|| |||||||||||||||||||| | ||| |||| ||||| ||| | ||||| |||||
Sbjct 44510 CCTTGGTATGGAAGTTATGCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGC 44569
Query 165750 T 165750
|
Sbjct 44570 T 44570
>seq37
Length=530226
Score = 104 bits (114), Expect = 3e-17
Identities = 185/265 (70%), Gaps = 5/265 (2%)
Strand=Plus/Plus
Query 166789 AAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCT 166848
|||||||||| || ||||| || || || | | || |||| | |||||| |
Sbjct 49822 AAGATGGTGATTGTGCTAATACATTTTGTGCGTTTAATCCAACCCAAGTTGGAGAAACTT 49881
Query 166849 ATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATA 166908
|||||||||| || || ||||||| |||||| || ||||| || || ||| ||||
Sbjct 49882 ATTCAATGGTCACCGCTAACCGCT-TTGGTCCCAAATCTTTGGGGTTTTTTTTTCCAATA 49940
Query 166909 AGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTC-C 166967
| | ||||| ||||| |||||| ||||| | || | ||| | |||| || | |
Sbjct 49941 AATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACCGGTTTATGGATGAGAGCTC 50000
Query 166968 ATCGGTATTATT-GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACT 167026
| | | || | ||||| ||| | ||||| || | |||| ||| |||||||||||| |
Sbjct 50001 CTAG--AGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGCTTCGTTTCCCAAGAAAT 50058
Query 167027 AAGGGCAGCAGAGGATCCTGAGTTT 167051
| ||||| || |||||||| |||
Sbjct 50059 CTGTGCAGCGGAAGATCCTGAATTT 50083
>seq98
Length=412963
Score = 93.3 bits (102), Expect = 5e-14
Identities = 217/318 (68%), Gaps = 11/318 (3%)
Strand=Plus/Minus
Query 164785 ACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCC 164844
|| || |||| | |||| | || || || |||||||| || ||| || ||| | |
Sbjct 210802 ACTAAAAACCATTTTTACATAGGATGATTTGGTGTTCTGATAATCTCCATTTTATTAAC- 210744
Query 164845 GCTACAATTTGTTTT-ATTACTGCATTCATCGCTGCTCCCCCTGTG-GACATTG--ATGG 164900
|| || ||||| || |||| ||| ||||| |||| ||||| | | |||| ||||
Sbjct 210743 GCAACT-TTTGTATTCATTATTGCCTTCAT---TGCTACCCCTTTAAGGCATTTTTATGG 210688
Query 164901 TATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGT 164960
||||||| || ||| | | || ||| | || || ||||| || || | || |
Sbjct 210687 TATTCGTTAATTTGTTTCTAGGTCCCTATTTTATGGCAACAATATTATTTTCTATGTCAT 210628
Query 164961 CGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCAT 165020
|||| ||| | || || || | ||||| || || || | ||| ||| ||||
Sbjct 210627 TATTCCTACTTTTGCAGCTATAGGTTTACACTTTTACCCAATCTAAAAAGTGGCATCCAT 210568
Query 165021 GGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCA-TCG 165079
||||| ||||| ||||| ||||||||||| || | |||| ||| |||| ||| | |
Sbjct 210567 TGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTCCTCTTC-TCACTTG 210509
Query 165080 GTGTAGCTTGCTACATGG 165097
|||||||||| || ||||
Sbjct 210508 GTGTAGCTTGTTAAATGG 210491
Score = 91.5 bits (100), Expect = 2e-13
Identities = 213/315 (68%), Gaps = 5/315 (2%)
Strand=Plus/Minus
Query 164785 ACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCC 164844
|| || |||| | |||| | || || || |||||||| || ||| | | ||| | |
Sbjct 211694 ACTAAAAACCATTTTTACATAGGATGATTTGGTGTTCTAATAATCTC-TATTTTATTAAC 211636
Query 164845 GCTACAATTTGTTTT-ATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTAT 164903
|| || ||||| || |||| ||| ||||| ||| || | | ||| || |||||||
Sbjct 211635 GCAACT-TTTGTATTCATTATTGCCTTCATTGCTACTACTTCAAGGGATTTTTATGGTAT 211577
Query 164904 TCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGT 164963
|| |||| ||| | | || ||| | || || ||||| || || | || | |
Sbjct 211576 TCATGAATTTGTTTCTAGGTCCCTATTTTATGGCAACAATATTATTTTCTATGTCATTAT 211517
Query 164964 TCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGA 165023
||| ||| | || || || | ||||| || || || | ||| ||| || | ||
Sbjct 211516 TCCTACTTTTGCAGCTATAGGTTTGCACTTTTACCCAATCTAAAAAGTGGCATCCGTTGA 211457
Query 165024 TGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCA-TCGGTG 165082
||| ||||| ||||| ||||||||||| || | |||| ||| |||| ||| | ||||
Sbjct 211456 TGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTCCTCTTC-TCACTTGGTG 211398
Query 165083 TAGCTTGCTACATGG 165097
||||||| || ||||
Sbjct 211397 TAGCTTGTTAAATGG 211383
>seq5090
Length=30266
Score = 87.8 bits (96), Expect = 2e-12
Identities = 103/140 (74%), Gaps = 7/140 (5%)
Strand=Plus/Plus
Query 165096 GGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATA 165155
|||| ||||||||||||| || ||| | ||||||| |||||||| || |||||
Sbjct 12992 GGGTAGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCACCCTTGGATCACTGTTGCATA 13051
Query 165156 TAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAG 165215
| || ||||| || || || |||||| || ||||||| | |||||||| ||
Sbjct 13052 TTCAGCTCCTGTTGCAGC-------GCCGTTTTCTTGATCTATCCAATTGGTCAAGGAAG 13104
Query 165216 TTTCTCTGATGGTATGCCTC 165235
|| ||||||||||||||||
Sbjct 13105 CTTTTCTGATGGTATGCCTC 13124
>seq2140
Length=74954
Score = 82.4 bits (90), Expect = 9e-11
Identities = 69/85 (81%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 165666 GGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCA 165725
|||||| || | || |||| | || |||||||||||||||||||| |||| |||||
Sbjct 15941 GGCTGATATTATTAATCGTGGTAACCTTGGTATGGAAGTTATGCATGAATGTAATGCTCA 16000
Query 165726 CAACTTCCCCCTCGACCTCGCTGCT 165750
||||||||||| ||||| ||||||
Sbjct 16001 TAACTTCCCCCTAGACCTAGCTGCT 16025
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 563465146290560
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