Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq752 347 1e-90 seq1263 298 6e-76 seq1519 114 1e-20 seq587 111 2e-19 seq37 104 3e-17 seq98 93.3 5e-14 seq5090 87.8 2e-12 seq2140 82.4 9e-11 >seq752 Length=193215 Score = 347 bits (384), Expect = 1e-90 Identities = 481/667 (72%), Gaps = 6/667 (1%) Strand=Plus/Minus Query 166238 TGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATAC 166297 ||| ||| | ||| | || || ||| | || || || || || || || |||||||| Sbjct 189601 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 189542 Query 166298 TCATGGACTCGCAAGCAGTTATCTGGAGGG-TGCAAACTTTCTTA-CTGCGGCAGTTTCT 166355 ||||||| | || || ||| |||| || ||||| ||||||| | || |||||||| Sbjct 189541 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 189484 Query 166356 ACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGG 166415 ||||| || || | | | ||||| | | | || || |||||||| || ||||| Sbjct 189483 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGAAGCCCAAGGA 189424 Query 166416 GATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCT 166475 ||||| | ||||||||| | || || || ||| | ||||||||||||||||| || Sbjct 189423 GATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCACT 189364 Query 166476 TTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCG 166534 || | ||||| ||||| ||| | || || ||||| | ||||| ||| | | | || Sbjct 189363 TTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGTTCAAT-TGCG 189305 Query 166535 TCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCAT 166594 || || ||||||||||| || |||| ||| |||||||| || ||| ||| || || || Sbjct 189304 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 189245 Query 166595 CTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTT 166654 || || || ||||| || ||||||| || || || ||| || || | || || || Sbjct 189244 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 189185 Query 166655 CCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGAT 166714 |||||| ||||||| | ||||| || || || |||||| ||||||||||||||||||| Sbjct 189184 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 189125 Query 166715 GGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGA 166774 ||| || || ||| | | || | || |||| | || |||||||||| ||| ||||| Sbjct 189124 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGTAGA 189065 Query 166775 GAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCA 166834 || ||| | | | |||||||||| |||||||| ||| || || || | || || Sbjct 189064 AAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACCCA 189005 Query 166835 AGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTAT 166894 || |||||||| ||||||||||| || || ||||||| |||||| || ||||| || | Sbjct 189004 AGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGT 188945 Query 166895 TGCGTTT 166901 ||| ||| Sbjct 188944 TGCTTTT 188938 >seq1263 Length=120960 Score = 298 bits (330), Expect = 6e-76 Identities = 417/579 (72%), Gaps = 6/579 (1%) Strand=Plus/Plus Query 166238 TGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATAC 166297 ||| ||| | ||| | || || ||| | || || || || || || || |||||||| Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865 Query 166298 TCATGGACTCGCAAGCAGTTATCTGGAGGG-TGCAAACTTTCTTA-CTGCGGCAGTTTCT 166355 ||||||| | || || ||| |||| || ||||| ||||||| | || |||||||| Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 54923 Query 166356 ACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGG 166415 ||||| || || | | | ||||| | | | || ||||||||||| || ||||| Sbjct 54924 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGA 54983 Query 166416 GATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCT 166475 ||||| | ||||||||| | || || || ||| | ||||||||||||||||| ||| Sbjct 54984 GATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCT 55043 Query 166476 TTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCG 166534 || | ||||| ||||| ||| | || || |||||| | ||||| ||| | | | || Sbjct 55044 TTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCG 55102 Query 166535 TCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCAT 166594 || || ||||||||||| || |||| ||| |||||||| || ||| ||| || || || Sbjct 55103 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 55162 Query 166595 CTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTT 166654 || || || ||||| || ||||||| || || || ||| || || | || || || Sbjct 55163 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 55222 Query 166655 CCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGAT 166714 |||||| ||||||| | ||||| || || || |||||| ||||||||||||||||||| Sbjct 55223 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 55282 Query 166715 GGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGA 166774 ||| || || ||| | | || | || |||| | || |||||||||| || ||||| Sbjct 55283 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGA 55342 Query 166775 GAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTT 166813 || ||| | | | |||||||||| |||||||| || Sbjct 55343 AAATACTTTATTTGAAGATGGTGATGCTGCAAATACATT 55381 >seq1519 Length=169030 Score = 114 bits (126), Expect = 1e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 165127 GGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTT 165186 |||||| | | |||||| || |||||| || |||| || |||||| |||| ||| Sbjct 82769 GGTATGTGCCGCTGGATTGCTGTTGCATATTCAGCTTCTGTTGCAGCTGCTACCGCCGTT 82710 Query 165187 TTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCT 165246 ||| || ||||||| | ||||| |||||||| ||||||||||||||| | || |||||| Sbjct 82709 TTCATGATCTATCCAATTGGTCATGGGAGTTTTTCTGATGGTATGCCTTTAGGAATCTCT 82650 Query 165247 GGTACTTTTAACTATATG 165264 ||||||| |||| |||| Sbjct 82649 AGTACTTTCAACTTTATG 82632 >seq587 Length=401750 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 165570 CACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 165629 || |||| | | | | ||||| ||||| |||||||| || |||||||| |||||||| || Sbjct 44390 CATTGCTTTAGATATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 44449 Query 165630 TATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAACCGTGCTGG 165689 | | ||||||||||| | || ||||| ||||| || | || | || | Sbjct 44450 TGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAA 44509 Query 165690 TCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCTCGCTGC 165749 || |||||||||||||||||||| | ||| |||| ||||| ||| | ||||| ||||| Sbjct 44510 CCTTGGTATGGAAGTTATGCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGC 44569 Query 165750 T 165750 | Sbjct 44570 T 44570 >seq37 Length=530226 Score = 104 bits (114), Expect = 3e-17 Identities = 185/265 (70%), Gaps = 5/265 (2%) Strand=Plus/Plus Query 166789 AAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCT 166848 |||||||||| || ||||| || || || | | || |||| | |||||| | Sbjct 49822 AAGATGGTGATTGTGCTAATACATTTTGTGCGTTTAATCCAACCCAAGTTGGAGAAACTT 49881 Query 166849 ATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATA 166908 |||||||||| || || ||||||| |||||| || ||||| || || ||| |||| Sbjct 49882 ATTCAATGGTCACCGCTAACCGCT-TTGGTCCCAAATCTTTGGGGTTTTTTTTTCCAATA 49940 Query 166909 AGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTC-C 166967 | | ||||| ||||| |||||| ||||| | || | ||| | |||| || | | Sbjct 49941 AATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACCGGTTTATGGATGAGAGCTC 50000 Query 166968 ATCGGTATTATT-GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACT 167026 | | | || | ||||| ||| | ||||| || | |||| ||| |||||||||||| | Sbjct 50001 CTAG--AGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGCTTCGTTTCCCAAGAAAT 50058 Query 167027 AAGGGCAGCAGAGGATCCTGAGTTT 167051 | ||||| || |||||||| ||| Sbjct 50059 CTGTGCAGCGGAAGATCCTGAATTT 50083 >seq98 Length=412963 Score = 93.3 bits (102), Expect = 5e-14 Identities = 217/318 (68%), Gaps = 11/318 (3%) Strand=Plus/Minus Query 164785 ACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCC 164844 || || |||| | |||| | || || || |||||||| || ||| || ||| | | Sbjct 210802 ACTAAAAACCATTTTTACATAGGATGATTTGGTGTTCTGATAATCTCCATTTTATTAAC- 210744 Query 164845 GCTACAATTTGTTTT-ATTACTGCATTCATCGCTGCTCCCCCTGTG-GACATTG--ATGG 164900 || || ||||| || |||| ||| ||||| |||| ||||| | | |||| |||| Sbjct 210743 GCAACT-TTTGTATTCATTATTGCCTTCAT---TGCTACCCCTTTAAGGCATTTTTATGG 210688 Query 164901 TATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGT 164960 ||||||| || ||| | | || ||| | || || ||||| || || | || | Sbjct 210687 TATTCGTTAATTTGTTTCTAGGTCCCTATTTTATGGCAACAATATTATTTTCTATGTCAT 210628 Query 164961 CGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCAT 165020 |||| ||| | || || || | ||||| || || || | ||| ||| |||| Sbjct 210627 TATTCCTACTTTTGCAGCTATAGGTTTACACTTTTACCCAATCTAAAAAGTGGCATCCAT 210568 Query 165021 GGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCA-TCG 165079 ||||| ||||| ||||| ||||||||||| || | |||| ||| |||| ||| | | Sbjct 210567 TGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTCCTCTTC-TCACTTG 210509 Query 165080 GTGTAGCTTGCTACATGG 165097 |||||||||| || |||| Sbjct 210508 GTGTAGCTTGTTAAATGG 210491 Score = 91.5 bits (100), Expect = 2e-13 Identities = 213/315 (68%), Gaps = 5/315 (2%) Strand=Plus/Minus Query 164785 ACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCC 164844 || || |||| | |||| | || || || |||||||| || ||| | | ||| | | Sbjct 211694 ACTAAAAACCATTTTTACATAGGATGATTTGGTGTTCTAATAATCTC-TATTTTATTAAC 211636 Query 164845 GCTACAATTTGTTTT-ATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTAT 164903 || || ||||| || |||| ||| ||||| ||| || | | ||| || ||||||| Sbjct 211635 GCAACT-TTTGTATTCATTATTGCCTTCATTGCTACTACTTCAAGGGATTTTTATGGTAT 211577 Query 164904 TCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGT 164963 || |||| ||| | | || ||| | || || ||||| || || | || | | Sbjct 211576 TCATGAATTTGTTTCTAGGTCCCTATTTTATGGCAACAATATTATTTTCTATGTCATTAT 211517 Query 164964 TCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGA 165023 ||| ||| | || || || | ||||| || || || | ||| ||| || | || Sbjct 211516 TCCTACTTTTGCAGCTATAGGTTTGCACTTTTACCCAATCTAAAAAGTGGCATCCGTTGA 211457 Query 165024 TGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCA-TCGGTG 165082 ||| ||||| ||||| ||||||||||| || | |||| ||| |||| ||| | |||| Sbjct 211456 TGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTCCTCTTC-TCACTTGGTG 211398 Query 165083 TAGCTTGCTACATGG 165097 ||||||| || |||| Sbjct 211397 TAGCTTGTTAAATGG 211383 >seq5090 Length=30266 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/140 (74%), Gaps = 7/140 (5%) Strand=Plus/Plus Query 165096 GGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATA 165155 |||| ||||||||||||| || ||| | ||||||| |||||||| || ||||| Sbjct 12992 GGGTAGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCACCCTTGGATCACTGTTGCATA 13051 Query 165156 TAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAG 165215 | || ||||| || || || |||||| || ||||||| | |||||||| || Sbjct 13052 TTCAGCTCCTGTTGCAGC-------GCCGTTTTCTTGATCTATCCAATTGGTCAAGGAAG 13104 Query 165216 TTTCTCTGATGGTATGCCTC 165235 || |||||||||||||||| Sbjct 13105 CTTTTCTGATGGTATGCCTC 13124 >seq2140 Length=74954 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 165666 GGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCA 165725 |||||| || | || |||| | || |||||||||||||||||||| |||| ||||| Sbjct 15941 GGCTGATATTATTAATCGTGGTAACCTTGGTATGGAAGTTATGCATGAATGTAATGCTCA 16000 Query 165726 CAACTTCCCCCTCGACCTCGCTGCT 165750 ||||||||||| ||||| |||||| Sbjct 16001 TAACTTCCCCCTAGACCTAGCTGCT 16025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563465146290560