Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq1535 120 3e-22
>seq1535
Length=214281
Score = 120 bits (132), Expect = 3e-22
Identities = 149/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
|||||||| || | ||| | ||||||| ||| | || || |||||||||||||| |||
Sbjct 153880 CCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAACATTGGGACAATGCCA 153821
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
|| ||| | ||||| ||||| ||||||||| ||| |||||| || ||| ||||||
Sbjct 153820 TTAGATGTCCCATTTGTTCCACGAATATAACTCCCAGTAGCTCGAATGTTATGAATTGAG 153761
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539
| || || || || || ||| || | |||||| ||| | ||||||||| ||
Sbjct 153760 ACCCCAATTCCTCCAGCTGATTTGCTGATGACCGCACACTCTTTCAAGGTATCATATATC 153701
Query 48540 CCTTCTATACTATCATCTATCATA 48563
|| || || |||||||| |||||
Sbjct 153700 CCCTCAATGCTATCATCCTTCATA 153677
Score = 109 bits (120), Expect = 6e-19
Identities = 149/206 (72%), Gaps = 3/206 (1%)
Strand=Plus/Minus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTC--TTAACATTGGGACAATAC 48417
|||||||| || | ||| ||||||| || || | | | |||||||||||||| |
Sbjct 169033 CCTCCTTGGTCAACATAAGGAGCAGTATCATTG-AACCCCAATCAACATTGGGACAATGC 168975
Query 48418 CATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTG 48477
|||| ||| | ||||| ||||| ||||||||| || |||||| || ||| |||||
Sbjct 168974 CATTAGATGTCCCATTTGTTCCACGAATATAACTCCCGGTAGCTCGAATGTTATGAATTG 168915
Query 48478 AAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAA 48537
| | || || || || ||| |||| || | ||||||| ||| | ||||||| |
Sbjct 168914 AGACCCCAATTCCTCCGGCCGATTTACTGATGACAGCACACTCTTTCAAGGTATCACATG 168855
Query 48538 TTCCTTCTATACTATCATCTATCATA 48563
||||||| || | ||||||| |||||
Sbjct 168854 TTCCTTCAATGCCATCATCTTTCATA 168829
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561913685009160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |