Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1535 120 3e-22 >seq1535 Length=214281 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | ||| | ||||||| ||| | || || |||||||||||||| ||| Sbjct 153880 CCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAACATTGGGACAATGCCA 153821 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| ||||| ||||||||| ||| |||||| || ||| |||||| Sbjct 153820 TTAGATGTCCCATTTGTTCCACGAATATAACTCCCAGTAGCTCGAATGTTATGAATTGAG 153761 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | || || || || || ||| || | |||||| ||| | ||||||||| || Sbjct 153760 ACCCCAATTCCTCCAGCTGATTTGCTGATGACCGCACACTCTTTCAAGGTATCATATATC 153701 Query 48540 CCTTCTATACTATCATCTATCATA 48563 || || || |||||||| ||||| Sbjct 153700 CCCTCAATGCTATCATCCTTCATA 153677 Score = 109 bits (120), Expect = 6e-19 Identities = 149/206 (72%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTC--TTAACATTGGGACAATAC 48417 |||||||| || | ||| ||||||| || || | | | |||||||||||||| | Sbjct 169033 CCTCCTTGGTCAACATAAGGAGCAGTATCATTG-AACCCCAATCAACATTGGGACAATGC 168975 Query 48418 CATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTG 48477 |||| ||| | ||||| ||||| ||||||||| || |||||| || ||| ||||| Sbjct 168974 CATTAGATGTCCCATTTGTTCCACGAATATAACTCCCGGTAGCTCGAATGTTATGAATTG 168915 Query 48478 AAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAA 48537 | | || || || || ||| |||| || | ||||||| ||| | ||||||| | Sbjct 168914 AGACCCCAATTCCTCCGGCCGATTTACTGATGACAGCACACTCTTTCAAGGTATCACATG 168855 Query 48538 TTCCTTCTATACTATCATCTATCATA 48563 ||||||| || | ||||||| ||||| Sbjct 168854 TTCCTTCAATGCCATCATCTTTCATA 168829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561913685009160