Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1034 109 4e-19 seq670 109 4e-19 seq379 100 2e-16 seq177 95.1 9e-15 seq536 93.3 3e-14 seq1057 91.5 1e-13 seq1842 86.0 5e-12 >seq1034 Length=134858 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||||| |||||| || || || |||||| |||||||||||||| | || | | Sbjct 72764 AGCCGCAGCACCAAGTGAAGGGTTGACTCTTTCTGAATATTGTAATCTGCAAGGGTCCTC 72705 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||||||||||| ||||| | |||||| || | || | ||||||| Sbjct 72704 CCATCTTCAAGTTGCTTACCGGCAAAGATCAGCCTCTGTTGGTCTGGTGGGATGCCCTCC 72645 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| || ||| | | | | ||||| ||| ||||||| || Sbjct 72644 TTATCCTGGATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCAACCTCCAAAGTG 72585 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||||| || | || || |||||||||||||| Sbjct 72584 ATCGTCTTTCCAGTAAGGGTCTTCACAAAAATCTGCAT 72547 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | |||| || || ||| ||| || || ||||| || || | Sbjct 72090 GCCACCCCTGAGGCGAAGGACCAGGTGCAGGGTGGACTCCTTCTGGATATTATAGTCCGC 72031 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| ||||||||| ||||| || |||| ||| ||||| | || Sbjct 72030 AAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCTCTGCTGATCAGGAGG 71971 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||||||||||| ||||||| ||| ||| | | | || ||||| || || Sbjct 71970 AATTCCCTCCTTGTCCTGAATCTTTGCTTTCACATTATCAATAGTGTCTGAGCTTTCAAC 71911 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| | || || || || || || | ||||| || || || |||||| Sbjct 71910 CTCAAGGGTGATGGTCTTGCCAGTAAGTGTTTTCACGAAGATTTGCATC 71862 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || || | ||||| || || ||| || || ||||| ||||| |||| Sbjct 72318 GCCACCTCTAAGACGAAGAACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGC 72259 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | | | || || | ||||| || |||||||||| | ||| ||||| | || Sbjct 72258 AAGCGTCCTGCCATCCTCAAGTTGCTTGCCAGCAAATATCAACCTCTGCTGATCAGGAGG 72199 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | || |||||||| |||||| ||| ||| | | | ||||| || || Sbjct 72198 GATACCTTCCTTGTCCTGAATCTTGGCTTTCACATTGTCAATTGTGTCTGAACTTTCAAC 72139 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || |||||||| || | ||||| |||||||||||||| Sbjct 72138 CTCCAGTGTTATAGTTTTTCCAGTAAGCGTTTTCACAAAAATCTGCAT 72091 >seq670 Length=332965 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 ||||| ||| |||||| || ||||||||||| | ||| | ||| | || |||| ||| Sbjct 148299 TGTAGAGTGGACTCTTTCTGGATATTGTAATCCGCAAGAGTGCGACCATCCTCCAGTTGC 148240 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || || || || || | ||| ||||||| |||| |||||||||||| |||||| Sbjct 148239 TTCCCAGCGAAGATGAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTGGATCTTT 148180 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | || || ||||||||||| ||| || || || |||||| Sbjct 148179 GCCTTCACATTGTCAATTGTATCAGAACTCTCCACCTCCAACGTTATTGTCTTCCCCGTC 148120 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | ||| || || || |||||||| Sbjct 148119 AGAGTCTTCACGAATATCTGCAT 148097 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || || ||||| || | ||| | || | || |||| |||||| |||||||| Sbjct 148059 TCCTTCTGGATGTTGTAGTCCGCCAGAGTCCGCCCATCCTCCAGCTGCTTCCCGGCAAAG 148000 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||| |||||||| || | || | ||||||||||| ||||||| || || Sbjct 147999 ATCAGACGCTGTTGGTCAGGCGGGATCCCCTCCTTGTCCTGAATCTTTGCCTTGACGTTG 147940 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||| ||||||| || ||||| ||||| || | ||| || || Sbjct 147939 TCAATGGTGTCGGAGCTCTCGACCTCCAGAGTGATCGTCTTTCCGGTGAGAGTCTTGACG 147880 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 147879 AATATCTGCAT 147869 >seq379 Length=244149 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || |||| |||| ||| || ||| ||| || || ||||| ||||||| Sbjct 80273 CCACCCCTCAGGCGCAGAACCAGATGAAGGGTGGACTCCTTCTGGATATTATAATCAGCC 80214 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | |||||||||| ||||| || ||||| ||||| ||||| || |||| ||| Sbjct 80213 AAGGTCCTTCCGTCGTCCAATTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGAGGA 80154 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| || || || ||| | | | || || ||| ||| Sbjct 80153 ATACCCTCCTTGTCCTGGATTTTCGCCTTAACATTGTCTATCGTGTCAGAGCTCTCGACC 80094 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | |||||||| || || || | ||||| || |||||||||||| Sbjct 80093 TCAAGGGTAATCGTCTTACCAGTTAGGGTTTTCACGAAAATCTGCATC 80046 >seq177 Length=344453 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| |||||||||| || | || | || || | |||||| |||||||| Sbjct 68893 CTCCTTCTGAATGTTGTAATCAGCGAGCGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAA 68834 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| ||||| || |||| ||||| ||||||||||| ||||| || || Sbjct 68833 GATCAGACGCTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTTAGCCTTCACGTT 68774 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||| ||||| | ||||||||| || ||||| | || || || Sbjct 68773 ATCAATGGTGTCGGAGCTCTCGACCTCAAGCGTAATCGTCTTCCCCGTAAGGGTCTTGAC 68714 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 68713 GAAGATCTGCAT 68702 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | ||||| | || | || ||||| ||| || ||||| ||||| || | Sbjct 68701 GCCGCCGCGGAGCCGGAGGACAAGGTGGAGCGTTGACTCCTTCTGAATGTTGTAGTCGGC 68642 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 | | || |||| || | ||| || ||||| || ||||| ||||| ||||||| || Sbjct 68641 CAAGGTGCGGCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAGG 68582 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||||||||||| ||||| || || | | | | || || ||| || Sbjct 68581 AATCCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTATCAATGGTGTCGGAGCTCTCAAC 68522 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | ||||||||| || ||||| | || || || || |||||||| Sbjct 68521 CTCGAGCGTAATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 68474 >seq536 Length=459343 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| | ||||| || || ||| ||| || || || |||||||||| || | || Sbjct 381891 AGCCTGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCGAGGGTCCGG 381832 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTC 48667 |||| |||| ||| || ||||| |||||||| ||||| || || | ||||| | || || Sbjct 381831 CCGTCCTCCAGCTGTTTCCCGGCGAATATCAGACGCTGCTGGTCTGGTGGGATC-CCTTC 381773 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 |||||| ||||| ||| ||| | | | || || ||| ||||| | || Sbjct 381772 CTTGTCCTGGATCTTCGCTTTGACATTGTCAATCGTATCAGAGCTCTCGACCTCGAGGGT 381713 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || || ||||||||||| || || ||||||||| Sbjct 381712 TATGGTCTTCCCAGTCAAAGTTTTGACGAAGATCTGCATC 381673 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 48536 GTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATC 48595 |||||| || | || || | ||| | || || ||| || || || ||||| || || Sbjct 382132 GTCGCCACCACGAAGGCGGAGCACAAGGTGGAGGGTGGATTCCTTCTGGATATTATAGTC 382073 Query 48596 AGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGT 48655 | || | | |||| |||| |||||| ||||| |||||||| | ||| || |||| Sbjct 382072 CGCCAGGGTCCTCCCGTCCTCCAGCTGCTTGCCGGCGAATATCAGCCTCTGCTGGTCCGG 382013 Query 48656 GGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTC 48715 |||| || |||||||| ||||| || ||| | | | || || ||| Sbjct 382012 TGGAATCCCTTCCTTGTCTTGGATCTTCGCCTTCACATTGTCAATTGTGTCGGAGCTCTC 381953 Query 48716 CACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||| ||| ||||| || || |||| ||||| || ||||||||||| Sbjct 381952 CACCTCCAGCGTGATCGTCTTCCCAGTCAGGGTTTTCACGAAAATCTGCAT 381902 >seq1057 Length=141302 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/237 (69%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | || | || || ||| |||||| || || ||||| || | Sbjct 136952 GCCTCCCCTAAGACGAAGAACTAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCTGC 137011 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || || | ||||||||| ||||| || || | ||||||||| | || Sbjct 137012 AAGTGTGCGGCCATCCTCTAGCTGCTTACCAGCAAAGATAAGCCTCTGTTGATCAGGAGG 137071 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||||||||||| ||||||| ||| ||| | | | | || || || || Sbjct 137072 AATCCCCTCCTTGTCCTGAATCTTTGCTTTCACATTATCAATGGTGTCAGAGCTTTCAAC 137131 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTGTAC 48775 ||| | || || || || || || | ||||| ||||| ||||||||| ||| ||| Sbjct 137132 CTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTAACAAAGATCTGCATC-TGTTTAC 137187 >seq1842 Length=92862 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 9094 TGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACC 9153 |||||||||||||| || | || ||||||| ||||||||| |||||||| | Sbjct 69498 TGAGCAATCCTGTCTCCAGATCTGACCTCAAAGTCAACGTCGGAATGGTTGAACAGGATA 69439 Query 9154 ACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGC 9213 || || || || |||||||| |||||||||| || |||||||| ||||| ||||| Sbjct 69438 ACCCCAACCGGGCCTCTGTAATCTGCATCGATCACTCCCGCACCCACATCGATCGAGTGC 69379 Query 9214 TT 9215 || Sbjct 69378 TT 69377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380808677502387