Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_019443.1
Length=172879
Score E
Sequences producing significant alignments: (Bits) Value
seq587 104 3e-17
seq5090 86.0 7e-12
>seq587
Length=401750
Score = 104 bits (114), Expect = 3e-17
Identities = 125/166 (75%), Gaps = 8/166 (5%)
Strand=Plus/Plus
Query 163324 ACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGT 163380
|||||||| |||||||| || |||||||| ||||||||||| || ||||| ||||
Sbjct 44409 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGT 44468
Query 163381 GGTAAAGTGATTCCTACTTGGGCAGATATCCTTAA-CAGAGCAGGACTTGGTATGGAAGT 163439
|| || ||| ||||| || ||||| |||| || | | ||||||||||||||
Sbjct 44469 CGT---GTAATTAATACTTAAGCTGATATTATTAATCATGGTA-ACCTTGGTATGGAAGT 44524
Query 163440 TATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485
|||||| || | |||| |||| ||||| || | ||||| ||||||
Sbjct 44525 TATGCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570
>seq5090
Length=30266
Score = 86.0 bits (94), Expect = 7e-12
Identities = 103/139 (74%), Gaps = 7/139 (5%)
Strand=Plus/Plus
Query 162832 GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATAC 162891
||| || ||||||||||| || ||| || ||||||| ||||||||| |||||||||
Sbjct 12993 GGTAGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCACCCTTGGATCACTGTTGCATAT 13052
Query 162892 TCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCT 162951
|| || || || ||||| ||| || |||||| ||||||| | ||||||||
Sbjct 13053 TCAGCTCCTGT---TGCAG----CGCCGTTTTCTTGATCTATCCAATTGGTCAAGGAAGC 13105
Query 162952 TTCTCTGACGCAATGCCTC 162970
|| ||||| | |||||||
Sbjct 13106 TTTTCTGATGGTATGCCTC 13124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 552892817352360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |