Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq587 104 3e-17 seq5090 86.0 7e-12 >seq587 Length=401750 Score = 104 bits (114), Expect = 3e-17 Identities = 125/166 (75%), Gaps = 8/166 (5%) Strand=Plus/Plus Query 163324 ACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGT 163380 |||||||| |||||||| || |||||||| ||||||||||| || ||||| |||| Sbjct 44409 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGT 44468 Query 163381 GGTAAAGTGATTCCTACTTGGGCAGATATCCTTAA-CAGAGCAGGACTTGGTATGGAAGT 163439 || || ||| ||||| || ||||| |||| || | | |||||||||||||| Sbjct 44469 CGT---GTAATTAATACTTAAGCTGATATTATTAATCATGGTA-ACCTTGGTATGGAAGT 44524 Query 163440 TATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 |||||| || | |||| |||| ||||| || | ||||| |||||| Sbjct 44525 TATGCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570 >seq5090 Length=30266 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/139 (74%), Gaps = 7/139 (5%) Strand=Plus/Plus Query 162832 GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATAC 162891 ||| || ||||||||||| || ||| || ||||||| ||||||||| ||||||||| Sbjct 12993 GGTAGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCACCCTTGGATCACTGTTGCATAT 13052 Query 162892 TCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCT 162951 || || || || ||||| ||| || |||||| ||||||| | |||||||| Sbjct 13053 TCAGCTCCTGT---TGCAG----CGCCGTTTTCTTGATCTATCCAATTGGTCAAGGAAGC 13105 Query 162952 TTCTCTGACGCAATGCCTC 162970 || ||||| | ||||||| Sbjct 13106 TTTTCTGATGGTATGCCTC 13124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552892817352360