Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_019444.1
Length=176043
Score E
Sequences producing significant alignments: (Bits) Value
seq752 316 2e-81
seq1263 269 3e-67
seq2510 136 4e-27
seq587 104 3e-17
seq310 93.3 5e-14
>seq752
Length=193215
Score = 316 bits (350), Expect = 2e-81
Identities = 474/668 (71%), Gaps = 4/668 (1%)
Strand=Plus/Minus
Query 164684 TGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACAC 164743
||| ||| | || | || || ||| |||| || ||| | ||||| || ||||| ||
Sbjct 189601 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 189542
Query 164744 CCATGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTCACAGCAGCTGTCTCGA 164802
||||| | ||| ||||||| | ||||| ||| || || | || || || || ||||
Sbjct 189541 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTTCGA 189483
Query 164803 CGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGA 164862
| ||||| || | | | ||||| | | |||| || |||||||| | || ||
Sbjct 189482 CTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGAAGCCCAAGGAG 189423
Query 164863 ATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCT 164922
|||| || ||||||||| | || || || |||| || || ||||||||||| | |
Sbjct 189422 ATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCACTT 189363
Query 164923 TCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCATTGGTATCCGT 164981
||| ||||| ||||| ||| | || || |||| || || || ||| | | | ||
Sbjct 189362 TCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGTTCAAT-TGCGA 189304
Query 164982 CCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATC 165041
||||| ||||| || || ||||||| ||| |||||||||||||| || ||||| ||
Sbjct 189303 CCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATT 189244
Query 165042 TACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTT 165101
|| ||||| |||||||| ||||||| || || || ||||| || || || || |||
Sbjct 189243 TATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTT 189184
Query 165102 AGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATG 165161
||||| | | || | ||||| || || || ||||| | ||||| || |||||||||
Sbjct 189183 CGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATG 189124
Query 165162 GGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGAA 165221
|| ||||| ||| | ||||| | || |||||| ||||| ||||| | || || |||
Sbjct 189123 GGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGTAGAA 189064
Query 165222 AATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGACACAG 165281
||||| |||| || ||||| || |||||||| || |||||| | | || ||
Sbjct 189063 AATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACCCAA 189004
Query 165282 GAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATT 165341
| ||||| |||||||| |||||||| || |||||||| ||||| || ||||| || ||
Sbjct 189003 GCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTT 188944
Query 165342 GCGTTTTC 165349
|| |||||
Sbjct 188943 GCTTTTTC 188936
>seq1263
Length=120960
Score = 269 bits (298), Expect = 3e-67
Identities = 410/579 (71%), Gaps = 4/579 (1%)
Strand=Plus/Plus
Query 164684 TGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACAC 164743
||| ||| | || | || || ||| |||| || ||| | ||||| || ||||| ||
Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865
Query 164744 CCATGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTCACAGCAGCTGTCTCGA 164802
||||| | ||| ||||||| | ||||| ||| || || | || || || || ||||
Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTTCGA 54924
Query 164803 CGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGA 164862
| ||||| || | | | ||||| | | |||| ||||||||||| | || ||
Sbjct 54925 CTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGAG 54984
Query 164863 ATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCT 164922
|||| || ||||||||| | || || || |||| || || ||||||||||| || |
Sbjct 54985 ATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCTT 55044
Query 164923 TCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCATTGGTATCCGT 164981
||| ||||| ||||| ||| | || || ||||| || || || ||| | | | ||
Sbjct 55045 TCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCGA 55103
Query 164982 CCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATC 165041
||||| ||||| || || ||||||| ||| |||||||||||||| || ||||| ||
Sbjct 55104 CCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATT 55163
Query 165042 TACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTT 165101
|| ||||| |||||||| ||||||| || || || ||||| || || || || |||
Sbjct 55164 TATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTT 55223
Query 165102 AGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATG 165161
||||| | | || | ||||| || || || ||||| | ||||| || |||||||||
Sbjct 55224 CGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATG 55283
Query 165162 GGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGAA 165221
|| ||||| ||| | ||||| | || |||||| ||||| ||||| | | || |||
Sbjct 55284 GGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGAA 55343
Query 165222 AATACATTATACGAGGATGGAGAGCAGGCAAATACCTTT 165260
||||| |||| || ||||| || |||||||| |||
Sbjct 55344 AATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382
>seq2510
Length=74850
Score = 136 bits (150), Expect = 4e-27
Identities = 134/173 (77%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 165426 GGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAA 165485
||||| ||||| ||||| || || || || ||| | ||||| ||| | ||||| |||
Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941
Query 165486 GATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTACGTGCT 165545
||||| ||||||||||| |||||||||||||| || || || || ||||| | ||||||
Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881
Query 165546 TGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGT 165598
||| |||| || ||||| || ||||||||| |||| ||||| || || ||
Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGT 56828
>seq587
Length=401750
Score = 104 bits (114), Expect = 3e-17
Identities = 122/165 (74%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 163714 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 163773
||||| ||||| |||||||| || |||||||| |||||||| || | ||||| ||||
Sbjct 44406 AGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA 44465
Query 163774 GGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTT 163833
|||||||| | || |||| || || | |||| | | | || ||||||||||||
Sbjct 44466 GGTCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAGTT 44525
Query 163834 ATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGCT 163878
|||||||| | ||| | || ||||| || | || || ||||||
Sbjct 44526 ATGCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570
>seq310
Length=267579
Score = 93.3 bits (102), Expect = 5e-14
Identities = 144/203 (71%), Gaps = 6/203 (3%)
Strand=Plus/Plus
Query 164054 GAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGT 164113
|||||| || ||| | || || || ||| | |||||| |||| || | || ||
Sbjct 133574 GAGGATACATGCATATTGGATGCGGCTGAAAATGCAGGACTTGAGCTTCCATGCTGGTGC 133633
Query 164114 CGTGCTGGTGCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGT 164173
| ||||| |||||||| | | ||||||| || || |||||| |||||||||||
Sbjct 133634 AGGGCTGGGCCTTGCTCCACTTTTGCAGGTCTCATCGTCTCTGGATCTGTTGATCAGTCG 133693
Query 164174 GATCAGTCATTCCTAGACGATGATCAGATTGCAGCAGG---ATTCGTGCTTACGTGTGTA 164230
||| ||||||||||||| || | |||| || |||||| || ||||| || ||| |
Sbjct 133694 GATGAGTCATTCCTAGATGACAAGCAGA-TGGAGCAGGGGCAT--GTGCTCACCTGTATC 133750
Query 164231 GCATATCCAACATCTGATTGTGT 164253
| || || | ||| ||||||||
Sbjct 133751 TCCTACCCGAAATCGGATTGTGT 133773
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 563014102907720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |