Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq752 316 2e-81 seq1263 269 3e-67 seq2510 136 4e-27 seq587 104 3e-17 seq310 93.3 5e-14 >seq752 Length=193215 Score = 316 bits (350), Expect = 2e-81 Identities = 474/668 (71%), Gaps = 4/668 (1%) Strand=Plus/Minus Query 164684 TGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACAC 164743 ||| ||| | || | || || ||| |||| || ||| | ||||| || ||||| || Sbjct 189601 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 189542 Query 164744 CCATGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTCACAGCAGCTGTCTCGA 164802 ||||| | ||| ||||||| | ||||| ||| || || | || || || || |||| Sbjct 189541 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTTCGA 189483 Query 164803 CGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGA 164862 | ||||| || | | | ||||| | | |||| || |||||||| | || || Sbjct 189482 CTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGAAGCCCAAGGAG 189423 Query 164863 ATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCT 164922 |||| || ||||||||| | || || || |||| || || ||||||||||| | | Sbjct 189422 ATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCACTT 189363 Query 164923 TCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCATTGGTATCCGT 164981 ||| ||||| ||||| ||| | || || |||| || || || ||| | | | || Sbjct 189362 TCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGTTCAAT-TGCGA 189304 Query 164982 CCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATC 165041 ||||| ||||| || || ||||||| ||| |||||||||||||| || ||||| || Sbjct 189303 CCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATT 189244 Query 165042 TACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTT 165101 || ||||| |||||||| ||||||| || || || ||||| || || || || ||| Sbjct 189243 TATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTT 189184 Query 165102 AGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATG 165161 ||||| | | || | ||||| || || || ||||| | ||||| || ||||||||| Sbjct 189183 CGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATG 189124 Query 165162 GGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGAA 165221 || ||||| ||| | ||||| | || |||||| ||||| ||||| | || || ||| Sbjct 189123 GGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGTAGAA 189064 Query 165222 AATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGACACAG 165281 ||||| |||| || ||||| || |||||||| || |||||| | | || || Sbjct 189063 AATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACCCAA 189004 Query 165282 GAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATT 165341 | ||||| |||||||| |||||||| || |||||||| ||||| || ||||| || || Sbjct 189003 GCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTT 188944 Query 165342 GCGTTTTC 165349 || ||||| Sbjct 188943 GCTTTTTC 188936 >seq1263 Length=120960 Score = 269 bits (298), Expect = 3e-67 Identities = 410/579 (71%), Gaps = 4/579 (1%) Strand=Plus/Plus Query 164684 TGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACAC 164743 ||| ||| | || | || || ||| |||| || ||| | ||||| || ||||| || Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865 Query 164744 CCATGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTCACAGCAGCTGTCTCGA 164802 ||||| | ||| ||||||| | ||||| ||| || || | || || || || |||| Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTTCGA 54924 Query 164803 CGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGA 164862 | ||||| || | | | ||||| | | |||| ||||||||||| | || || Sbjct 54925 CTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGAG 54984 Query 164863 ATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCT 164922 |||| || ||||||||| | || || || |||| || || ||||||||||| || | Sbjct 54985 ATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCTT 55044 Query 164923 TCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCATTGGTATCCGT 164981 ||| ||||| ||||| ||| | || || ||||| || || || ||| | | | || Sbjct 55045 TCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCGA 55103 Query 164982 CCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATC 165041 ||||| ||||| || || ||||||| ||| |||||||||||||| || ||||| || Sbjct 55104 CCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATT 55163 Query 165042 TACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTT 165101 || ||||| |||||||| ||||||| || || || ||||| || || || || ||| Sbjct 55164 TATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTT 55223 Query 165102 AGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATG 165161 ||||| | | || | ||||| || || || ||||| | ||||| || ||||||||| Sbjct 55224 CGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATG 55283 Query 165162 GGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGAA 165221 || ||||| ||| | ||||| | || |||||| ||||| ||||| | | || ||| Sbjct 55284 GGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGAA 55343 Query 165222 AATACATTATACGAGGATGGAGAGCAGGCAAATACCTTT 165260 ||||| |||| || ||||| || |||||||| ||| Sbjct 55344 AATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382 >seq2510 Length=74850 Score = 136 bits (150), Expect = 4e-27 Identities = 134/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 165426 GGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAA 165485 ||||| ||||| ||||| || || || || ||| | ||||| ||| | ||||| ||| Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941 Query 165486 GATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTACGTGCT 165545 ||||| ||||||||||| |||||||||||||| || || || || ||||| | |||||| Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881 Query 165546 TGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGT 165598 ||| |||| || ||||| || ||||||||| |||| ||||| || || || Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGT 56828 >seq587 Length=401750 Score = 104 bits (114), Expect = 3e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 163714 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 163773 ||||| ||||| |||||||| || |||||||| |||||||| || | ||||| |||| Sbjct 44406 AGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA 44465 Query 163774 GGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTT 163833 |||||||| | || |||| || || | |||| | | | || |||||||||||| Sbjct 44466 GGTCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAGTT 44525 Query 163834 ATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGCT 163878 |||||||| | ||| | || ||||| || | || || |||||| Sbjct 44526 ATGCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570 >seq310 Length=267579 Score = 93.3 bits (102), Expect = 5e-14 Identities = 144/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 164054 GAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGT 164113 |||||| || ||| | || || || ||| | |||||| |||| || | || || Sbjct 133574 GAGGATACATGCATATTGGATGCGGCTGAAAATGCAGGACTTGAGCTTCCATGCTGGTGC 133633 Query 164114 CGTGCTGGTGCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGT 164173 | ||||| |||||||| | | ||||||| || || |||||| ||||||||||| Sbjct 133634 AGGGCTGGGCCTTGCTCCACTTTTGCAGGTCTCATCGTCTCTGGATCTGTTGATCAGTCG 133693 Query 164174 GATCAGTCATTCCTAGACGATGATCAGATTGCAGCAGG---ATTCGTGCTTACGTGTGTA 164230 ||| ||||||||||||| || | |||| || |||||| || ||||| || ||| | Sbjct 133694 GATGAGTCATTCCTAGATGACAAGCAGA-TGGAGCAGGGGCAT--GTGCTCACCTGTATC 133750 Query 164231 GCATATCCAACATCTGATTGTGT 164253 | || || | ||| |||||||| Sbjct 133751 TCCTACCCGAAATCGGATTGTGT 133773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563014102907720