Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq715 221 2e-52
seq318 214 3e-50
seq2451 87.8 3e-12
>seq715
Length=381403
Score = 221 bits (244), Expect = 2e-52
Identities = 398/576 (69%), Gaps = 12/576 (2%)
Strand=Plus/Plus
Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181
||||||| ||| || || || | ||| | |||||| || || ||| | | |||| |||
Sbjct 115239 TAGAGCAAGCACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAG 115298
Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241
|| | |||||||| | |||| || ||| | ||| || || || ||| |||
Sbjct 115299 AAAGTCAACCCAGGCATCAACCCCG-CTTTTTCAACCAAAATATCGCGCAGAAGCTTCCA 115357
Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301
|||||||| || |||||||| ||||||||| ||||| ||| |||| || |
Sbjct 115358 GAGAAGAAAATCCCCTCCACGCAAGCGAACGCGAGGAGCCGCTCCGCGAACGA------C 115411
Query 48302 TTG--TCTGA-GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTC 48358
||| || | |||||| |||||||| || |||||||||| || ||| |||| |||
Sbjct 115412 TTGGATCCGTCGATCCATTTCAGCGCCCACTCAGCCTTCTTCTGGACGCACGGCACCGTT 115471
Query 48359 TCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGC 48418
|| ||||| ||||||| || || |||| | ||| || ||||| ||||||
Sbjct 115472 TCGATGGCGTGGAAGAGTTTGTTCTTCTCATTGGAATCCTTGACGTAGGTTTCGAGCAGG 115531
Query 48419 TTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTG 48478
|||||||||||||| | ||||| || ||||||||||| ||||| ||||| |
Sbjct 115532 AGACTATACATCTCAGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTATAAGGCACGA 115591
Query 48479 GCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCC 48537
||||| |||||| | || | ||| || ||| || ||||| || ||| || ||
Sbjct 115592 GCCTCCGCCACCTGGATCTCCTTCATGAACCT-TCCGGCGAGATTTTCGAGGACGATGCC 115650
Query 48538 ATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG 48597
||| || || || ||||| || ||||| || | | ||| |||||||||| ||||||
Sbjct 115651 ATCGGAGGCGGCGAAGAATGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCAGCGGTGAG 115710
Query 48598 AGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657
|| |||||| | | ||| | | || ||| || || || | ||||||||||| ||
Sbjct 115711 AGAGTTCCAGTGAGGGAGGTCCTGGGACAAGTCGACCTCCTCGGCTGTCCAGAAGGAGGC 115770
Query 48658 GAGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693
||| || |||||||| |||| || ||||| ||
Sbjct 115771 CTCTGCCTTCTTGTACATCTCCCAGATTTCCGGGTA 115806
>seq318
Length=266665
Score = 214 bits (236), Expect = 3e-50
Identities = 577/869 (66%), Gaps = 29/869 (3%)
Strand=Plus/Plus
Query 47826 CCGCTGTCTTGACCTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCA 47885
|||||| ||| |||||| || || || || ||||| ||||| || |||||||||| |
Sbjct 55581 CCGCTGCCTT---CTGGTACTCGCCGACCCTTTTCTCGAAGAAATTGGTCTTCCCCTGAA 55637
Query 47886 ACGAGATGTTCTCCATGAAGAGGAAGGGGTTGGGTGT---GT-TATACACCCGTGTCAGG 47941
|||||| |||||| || || ||||||| || ||| |||| |||
Sbjct 55638 GCGAGATCAGCTCCATCCAGTCAAACGGGTTGGCCACACCGTATATCTTCCCG---CAG- 55693
Query 47942 CCCATCTGTTCCAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATG 48001
|| | | |||||| | |||| || ||| |||||||||| | ||| ||| | |
Sbjct 55694 CCGAGCGCCCCCAGCAAGCGATCTGCCACGAACTCGATGTACTGGCTCATAAGGTCGCCG 55753
Query 48002 TTCATGCCTATGAGGGA-CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCAC 48060
|||||||| | | || ||||| || || | | ||||||| |||| || | |||
Sbjct 55754 TTCATGCCCACCAAGGCGCACGG-CAGCGCGTCGCACACAAACTCCCTCTCGATGTCCAC 55812
Query 48061 GGCTTCCCCCACAATCTGCTTAACGCGGGACTC--TGAGGGTT-TGTTGCGCAGGTGCTT 48117
|| |||| || ||| ||| ||||| ||| | || | | || |||| |
Sbjct 55813 CGCATCCCTAACGATCCCCTTCACGCGCTCCTCACTCAGCTTCGTCTTCAGCAGTT---- 55868
Query 48118 GGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTT 48177
| ||||||| ||| || ||||| | ||| | || ||||| || ||| | ||||
Sbjct 55869 --CGTAGAGCAAGCAAGCGAAGTCGCAGTGTAGACCCTCGTCTCGCGAGATCAATTCGTT 55926
Query 48178 GGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGA 48237
|||||| || || ||||| | ||| | || || |||||||| || || ||||
Sbjct 55927 CGAGAAGGTCAGTCCCGGCATTAGCCCGCGCTTCTTCAGCCAGAATATCGCGCAGAAACT 55986
Query 48238 GCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGC 48297
|| |||||||| || ||||| || ||||||||| | |||| ||| |||| ||
Sbjct 55987 CCCGGAGAAGAAAATCCCCTCGACGCAAGCGAACGCGATCAGCCGCTCGGCGAA----GC 56042
Query 48298 GTTCTTGTCTGA-GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCG 48356
|| | | |||||| || ||||| || ||||||||||| | ||| |||| |
Sbjct 56043 TCTCGGCACCGCCGATCCACTTGAGAGCCCAATCCGCCTTCTTCTTCACGCAGGGCACCA 56102
Query 48357 TCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCA 48416
| || ||||| ||||||| || || |||| | | |||| | |||||| ||| |
Sbjct 56103 TGTCGATGGCATGGAAGAGTTTGTTCTTCTCATCGGAGTCCTTGATATAGGTCTCGAGGA 56162
Query 48417 GCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCC 48476
| ||||||||| ||||| | ||||| || ||||||||||| || |||||||| |
Sbjct 56163 GGAGGCTGTACATCTCGGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGGCTC 56222
Query 48477 TGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATC 48535
||| || ||||| || || | ||| | |||| || ||||| ||| ||
Sbjct 56223 GGGCTTCCGCGACCTGGACCTCCTTCATGAAGC-GAGCAGCAAGGTTCTCGAGGACGATT 56281
Query 48536 CCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTG 48595
|| || || || || ||||| || ||||| || | | |||||||||||| | ||||
Sbjct 56282 CCGTCGGAGGCGGCGAAGAAAGCGAGGACGTGGGTGATAAAATGGCGCTCGCCATCGGTG 56341
Query 48596 AGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGAC 48655
|| | | |||| | | ||| | | ||||| || || || |||||||||||||
Sbjct 56342 AGGGAGTCCCAGTGGCGGAGGTCCTGGGAGAGGTCGACCTCCTCAGCAGTCCAGAAGGAG 56401
Query 48656 GCGAGTGCTTTTTTGTACATGCCCCATAT 48684
|| || || |||||||| |||| ||
Sbjct 56402 GCCTCAGCCTTCTTGTACATCTCCCAGAT 56430
>seq2451
Length=68748
Score = 87.8 bits (96), Expect = 3e-12
Identities = 349/547 (64%), Gaps = 23/547 (4%)
Strand=Plus/Minus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
|||||| || | || || ||||| ||||| || |||||||||| | |||||| |||
Sbjct 68443 CTGGTACTCGTCGACCCTTTTCTCGAAGAAATTGGTCTTCCCCTGAAGCGAGATCAGCTC 68384
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACA----CCCGTGTCAGGCCCATCTGTTCCA 47954
||| || || ||||||| ||| | |||| ||| |||| | |||
Sbjct 68383 CATCCAGTCAAACGGGTTGGCCACACCATATATCTTCCCG---CAG-CCCAGCGCCCCCA 68328
Query 47955 GCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014
||| || || ||| |||||||||| | ||| ||| | ||||||||| | |
Sbjct 68327 GCAACCAGTCTGCCACGAACTCGATGTACTGGCTCATAAGGTCGCCGTTCATGCCCACCA 68268
Query 48015 GGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074
|| ||||| || | | ||||||| |||| || | ||| || |||| | |
Sbjct 68267 AGGCGCAGGGCAGTGCGTCGCACACAAACTCCCTCTCGATGTCCACCGCGTCCCTAATGA 68208
Query 48075 TCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134
|| ||| ||||| ||| | || ||| | | ||||||| ||| |
Sbjct 68207 TCCCCTTCACGCGCTCCTCACTCAGCTT------CAGTT------CGTAGAGCAAGCAAG 68160
Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194
| ||||| | ||| | || ||||| || ||| | | || |||||| ||| || |
Sbjct 68159 CGAAGTCGCAGTGTAGACCCTCGTCTCGCGAGATCAATTCATTCGAGAAGGTGAGTCCCG 68100
Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254
|||| | ||| | || || |||||||| || || |||| || |||||||| || |
Sbjct 68099 GCATTAGCCCGCGCTTCTTCAGCCAGAATATCGCGTAGAAACTCCCGGAGAAGAAAATCC 68040
Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314
||| || ||||||| | |||| ||| |||| || ||| |||||
Sbjct 68039 CCTTGACGCAAACGAACGCTATCAGCCGCTCGGCGAAGCTCTCGGCACCGTC---GATCC 67983
Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374
| || ||||| || ||||||||||| | ||| |||| ||| || ||||| || |||
Sbjct 67982 ACTTGAGAGCCCAATCCGCCTTCTTCTTCACGCAGGGCACCGTGTCGATGGCATGGGAGA 67923
Query 48375 GCTTCTT 48381
| || ||
Sbjct 67922 GTTTGTT 67916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931209453320960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |