Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq715 221 2e-52 seq318 214 3e-50 seq2451 87.8 3e-12 >seq715 Length=381403 Score = 221 bits (244), Expect = 2e-52 Identities = 398/576 (69%), Gaps = 12/576 (2%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 ||||||| ||| || || || | ||| | |||||| || || ||| | | |||| ||| Sbjct 115239 TAGAGCAAGCACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAG 115298 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 || | |||||||| | |||| || ||| | ||| || || || ||| ||| Sbjct 115299 AAAGTCAACCCAGGCATCAACCCCG-CTTTTTCAACCAAAATATCGCGCAGAAGCTTCCA 115357 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 |||||||| || |||||||| ||||||||| ||||| ||| |||| || | Sbjct 115358 GAGAAGAAAATCCCCTCCACGCAAGCGAACGCGAGGAGCCGCTCCGCGAACGA------C 115411 Query 48302 TTG--TCTGA-GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTC 48358 ||| || | |||||| |||||||| || |||||||||| || ||| |||| ||| Sbjct 115412 TTGGATCCGTCGATCCATTTCAGCGCCCACTCAGCCTTCTTCTGGACGCACGGCACCGTT 115471 Query 48359 TCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGC 48418 || ||||| ||||||| || || |||| | ||| || ||||| |||||| Sbjct 115472 TCGATGGCGTGGAAGAGTTTGTTCTTCTCATTGGAATCCTTGACGTAGGTTTCGAGCAGG 115531 Query 48419 TTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTG 48478 |||||||||||||| | ||||| || ||||||||||| ||||| ||||| | Sbjct 115532 AGACTATACATCTCAGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTATAAGGCACGA 115591 Query 48479 GCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCC 48537 ||||| |||||| | || | ||| || ||| || ||||| || ||| || || Sbjct 115592 GCCTCCGCCACCTGGATCTCCTTCATGAACCT-TCCGGCGAGATTTTCGAGGACGATGCC 115650 Query 48538 ATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG 48597 ||| || || || ||||| || ||||| || | | ||| |||||||||| |||||| Sbjct 115651 ATCGGAGGCGGCGAAGAATGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCAGCGGTGAG 115710 Query 48598 AGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 || |||||| | | ||| | | || ||| || || || | ||||||||||| || Sbjct 115711 AGAGTTCCAGTGAGGGAGGTCCTGGGACAAGTCGACCTCCTCGGCTGTCCAGAAGGAGGC 115770 Query 48658 GAGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 ||| || |||||||| |||| || ||||| || Sbjct 115771 CTCTGCCTTCTTGTACATCTCCCAGATTTCCGGGTA 115806 >seq318 Length=266665 Score = 214 bits (236), Expect = 3e-50 Identities = 577/869 (66%), Gaps = 29/869 (3%) Strand=Plus/Plus Query 47826 CCGCTGTCTTGACCTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCA 47885 |||||| ||| |||||| || || || || ||||| ||||| || |||||||||| | Sbjct 55581 CCGCTGCCTT---CTGGTACTCGCCGACCCTTTTCTCGAAGAAATTGGTCTTCCCCTGAA 55637 Query 47886 ACGAGATGTTCTCCATGAAGAGGAAGGGGTTGGGTGT---GT-TATACACCCGTGTCAGG 47941 |||||| |||||| || || ||||||| || ||| |||| ||| Sbjct 55638 GCGAGATCAGCTCCATCCAGTCAAACGGGTTGGCCACACCGTATATCTTCCCG---CAG- 55693 Query 47942 CCCATCTGTTCCAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATG 48001 || | | |||||| | |||| || ||| |||||||||| | ||| ||| | | Sbjct 55694 CCGAGCGCCCCCAGCAAGCGATCTGCCACGAACTCGATGTACTGGCTCATAAGGTCGCCG 55753 Query 48002 TTCATGCCTATGAGGGA-CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCAC 48060 |||||||| | | || ||||| || || | | ||||||| |||| || | ||| Sbjct 55754 TTCATGCCCACCAAGGCGCACGG-CAGCGCGTCGCACACAAACTCCCTCTCGATGTCCAC 55812 Query 48061 GGCTTCCCCCACAATCTGCTTAACGCGGGACTC--TGAGGGTT-TGTTGCGCAGGTGCTT 48117 || |||| || ||| ||| ||||| ||| | || | | || |||| | Sbjct 55813 CGCATCCCTAACGATCCCCTTCACGCGCTCCTCACTCAGCTTCGTCTTCAGCAGTT---- 55868 Query 48118 GGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTT 48177 | ||||||| ||| || ||||| | ||| | || ||||| || ||| | |||| Sbjct 55869 --CGTAGAGCAAGCAAGCGAAGTCGCAGTGTAGACCCTCGTCTCGCGAGATCAATTCGTT 55926 Query 48178 GGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGA 48237 |||||| || || ||||| | ||| | || || |||||||| || || |||| Sbjct 55927 CGAGAAGGTCAGTCCCGGCATTAGCCCGCGCTTCTTCAGCCAGAATATCGCGCAGAAACT 55986 Query 48238 GCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGC 48297 || |||||||| || ||||| || ||||||||| | |||| ||| |||| || Sbjct 55987 CCCGGAGAAGAAAATCCCCTCGACGCAAGCGAACGCGATCAGCCGCTCGGCGAA----GC 56042 Query 48298 GTTCTTGTCTGA-GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCG 48356 || | | |||||| || ||||| || ||||||||||| | ||| |||| | Sbjct 56043 TCTCGGCACCGCCGATCCACTTGAGAGCCCAATCCGCCTTCTTCTTCACGCAGGGCACCA 56102 Query 48357 TCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCA 48416 | || ||||| ||||||| || || |||| | | |||| | |||||| ||| | Sbjct 56103 TGTCGATGGCATGGAAGAGTTTGTTCTTCTCATCGGAGTCCTTGATATAGGTCTCGAGGA 56162 Query 48417 GCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCC 48476 | ||||||||| ||||| | ||||| || ||||||||||| || |||||||| | Sbjct 56163 GGAGGCTGTACATCTCGGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGGCTC 56222 Query 48477 TGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATC 48535 ||| || ||||| || || | ||| | |||| || ||||| ||| || Sbjct 56223 GGGCTTCCGCGACCTGGACCTCCTTCATGAAGC-GAGCAGCAAGGTTCTCGAGGACGATT 56281 Query 48536 CCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTG 48595 || || || || || ||||| || ||||| || | | |||||||||||| | |||| Sbjct 56282 CCGTCGGAGGCGGCGAAGAAAGCGAGGACGTGGGTGATAAAATGGCGCTCGCCATCGGTG 56341 Query 48596 AGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGAC 48655 || | | |||| | | ||| | | ||||| || || || ||||||||||||| Sbjct 56342 AGGGAGTCCCAGTGGCGGAGGTCCTGGGAGAGGTCGACCTCCTCAGCAGTCCAGAAGGAG 56401 Query 48656 GCGAGTGCTTTTTTGTACATGCCCCATAT 48684 || || || |||||||| |||| || Sbjct 56402 GCCTCAGCCTTCTTGTACATCTCCCAGAT 56430 >seq2451 Length=68748 Score = 87.8 bits (96), Expect = 3e-12 Identities = 349/547 (64%), Gaps = 23/547 (4%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || | || || ||||| ||||| || |||||||||| | |||||| ||| Sbjct 68443 CTGGTACTCGTCGACCCTTTTCTCGAAGAAATTGGTCTTCCCCTGAAGCGAGATCAGCTC 68384 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACA----CCCGTGTCAGGCCCATCTGTTCCA 47954 ||| || || ||||||| ||| | |||| ||| |||| | ||| Sbjct 68383 CATCCAGTCAAACGGGTTGGCCACACCATATATCTTCCCG---CAG-CCCAGCGCCCCCA 68328 Query 47955 GCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014 ||| || || ||| |||||||||| | ||| ||| | ||||||||| | | Sbjct 68327 GCAACCAGTCTGCCACGAACTCGATGTACTGGCTCATAAGGTCGCCGTTCATGCCCACCA 68268 Query 48015 GGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074 || ||||| || | | ||||||| |||| || | ||| || |||| | | Sbjct 68267 AGGCGCAGGGCAGTGCGTCGCACACAAACTCCCTCTCGATGTCCACCGCGTCCCTAATGA 68208 Query 48075 TCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 || ||| ||||| ||| | || ||| | | ||||||| ||| | Sbjct 68207 TCCCCTTCACGCGCTCCTCACTCAGCTT------CAGTT------CGTAGAGCAAGCAAG 68160 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 | ||||| | ||| | || ||||| || ||| | | || |||||| ||| || | Sbjct 68159 CGAAGTCGCAGTGTAGACCCTCGTCTCGCGAGATCAATTCATTCGAGAAGGTGAGTCCCG 68100 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | ||| | || || |||||||| || || |||| || |||||||| || | Sbjct 68099 GCATTAGCCCGCGCTTCTTCAGCCAGAATATCGCGTAGAAACTCCCGGAGAAGAAAATCC 68040 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 ||| || ||||||| | |||| ||| |||| || ||| ||||| Sbjct 68039 CCTTGACGCAAACGAACGCTATCAGCCGCTCGGCGAAGCTCTCGGCACCGTC---GATCC 67983 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 | || ||||| || ||||||||||| | ||| |||| ||| || ||||| || ||| Sbjct 67982 ACTTGAGAGCCCAATCCGCCTTCTTCTTCACGCAGGGCACCGTGTCGATGGCATGGGAGA 67923 Query 48375 GCTTCTT 48381 | || || Sbjct 67922 GTTTGTT 67916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931209453320960