Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq318 159 6e-34 seq715 116 7e-21 >seq318 Length=266665 Score = 159 bits (176), Expect = 6e-34 Identities = 548/852 (64%), Gaps = 20/852 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||||||||||||||||||| | ||| |||||| || || ||| | || || Sbjct 56430 ATCTGGGAGATGTACAAGAAGGCTGAGGCCTCCTTCTGGACTGCTGAGGAGGTCGACCTC 56371 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 || ||||| | | |||| || | || || | | ||||| |||||| ||| || Sbjct 56370 TCCCAGGACCTCCGCCACTGGGACTCCCTCACCGATGGCGAGCGCCATTTTATCACCCAC 56311 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGC-GAGAGATT 25655 || | || ||||| || ||||| || || || || |||||| || ||| | | || Sbjct 56310 GTCCTCGCTTTCTTCGCCGCCTCCGACGGAATCGTCCTCGAGAACCT-TGCTGCTCGCTT 56252 Query 25656 CACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715 || | ||| || ||| || ||| ||| ||||| || |||||||| ||||| || Sbjct 56251 CATGAAGGAGGTCCAGGTCGCGGAAGCCCGAGCCTTCTATGGCTTCCAGATCGCCATTGA 56192 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGA 25775 || | ||||| ||| |||| | || || ||| || || | ||| || || Sbjct 56191 GAACATTCACTCCGAGATGTACAGCCTCCTCCTCGAGACCTATATCAAGGACTCCGATGA 56132 Query 25776 GAGAGATC-GGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGT 25834 || ||| | || || ||||||||| | ||| || | |||| ||||||| | Sbjct 56131 GA-AGAACAAACTCTTCCATGCCATCGACATGGTGCCCTGCGTGAAGAAGAAGGCGGATT 56073 Query 25835 GGGCCATGAAGTGGATCAACAG-CCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 |||| | ||||||||| | | | ||| || || | |||||||||| | || || Sbjct 56072 GGGCTCTCAAGTGGATCGGCGGTGCCGAGAGC----TTCGCCGAGCGGCTGATCGCGTTC 56017 Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCA 25952 ||| || ||||| || || ||| ||| || ||| || || |||||||| ||| | Sbjct 56016 GCTTGCGTCGAGGGGATTTTCTTCTCCGGGAGTTTCTGC-GCGATATTCTGGCTGAAGAA 55958 Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 | ||| ||||| || ||| ||| || ||||| | ||| | ||||||||||| Sbjct 55957 GCGCGGGCTAATGCCGGGACTGACCTTCTCGAACGAATTGATCTCGCGAGACGAGGGTCT 55898 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCT--CCACAAACCT-TCTCA 26069 ||| | || || || ||| ||||||| | | |||| || || || | | Sbjct 55897 ACACTGCGACTTCGCTTGCTTGCTCTA------CGAACTGCTGAAGACGAAGCTGAGTGA 55844 Query 26070 AGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129 ||| ||| | | ||| | | || || ||||| ||||||| ||||||| Sbjct 55843 GGAGCGCGTGAAGGGGATCGTTAGGGATGCGGTGGACATCGAGAGGGAGTTTGTGTGCGA 55784 Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189 ||||||||||| | || |||||||| ||||| |||| Sbjct 55783 CGCGCTGCCGTGCGCCTTGGTGGGCATGAACGGCGACCTTATGAGCCAGTACATCGAGTT 55724 Query 26190 TGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCC 26249 ||||| || | ||||| | ||| || || | | ||| || | | ||||| Sbjct 55723 CGTGGCAGATCGCTTGCTGGGGGCGCTCGGCTGCGGGAAGATATACGGTGTGGCCAACCC 55664 Query 26250 GTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGT 26309 ||| |||| ||||| || ||| | | ||||||||||| ||||| || || ||||| Sbjct 55663 GTTTGACTGGATGGAGCTGATCTCGCTTCAGGGGAAGACCAATTTCTTCGAGAAAAGGGT 55604 Query 26310 CGGCGACTATCA 26321 |||||| || || Sbjct 55603 CGGCGAGTACCA 55592 >seq715 Length=381403 Score = 116 bits (128), Expect = 7e-21 Identities = 548/860 (64%), Gaps = 31/860 (4%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || |||||||||||||||||||| | ||| |||||| ||||| ||| | || Sbjct 115800 GAAATCTGGGAGATGTACAAGAAGGCAGAGGCCTCCTTCTGGACAGCCGAGGAGGTCGAC 115741 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || || ||||| | |||| || |||| || ||||||| || || ||| Sbjct 115740 TTGTCCCAGGACCTCCCTCACTGGAACTCTCTCACCGCTGACGAGCGCCACTTCATCACC 115681 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | |||||||| || ||||| ||||| || || ||| ||||| || || Sbjct 115680 CACGTCCTCGCATTCTTCGCCGCCTCCGATGGCATCGTCCTCGAAAATCTCGCCGGAAGG 115621 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTG-TTTCTACGGTTTCCAGATGGCCAT 25712 |||| | ||| | ||| | ||||| | ||| || ||||| |||||||| ||||| Sbjct 115620 TTCATGAAGGAGATCCAGGTGGCGGAGG-CTCGTGCCTTATACGGCTTCCAGATCGCCAT 115562 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGT 25769 ||| || | ||||||||| ||||| | || ||| | || ||| | | || Sbjct 115561 CGAGAACATTCACTCTGAGATGTAT---AGTCTCCTGCTCGAAACCTACGTCAAGGATTC 115505 Query 25770 CGCCGAGAGAGATC-GGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 | |||| ||| | || || |||||||| | || || || ||| ||||| Sbjct 115504 CAATGAGA-AGAACAAACTCTTCCACGCCATCGAAACGGTGCCGTGCGTCCAGAAGAAGG 115446 Query 25829 CGCGGTGGGCCATGAAGTGGATCAAC--AGCCAGAGCGCTACGTTTGGCGAGCGGCTGGT 25886 | |||||| |||| |||||| || | ||| || |||| | |||||||| | Sbjct 115445 CTGAGTGGGCGCTGAAATGGATCGACGGATCCA-AG----TCGTTCGCGGAGCGGCTCCT 115391 Query 25887 AGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGG-TTCGTTTGCGGCCATCTTCTGGC 25945 || || ||| |||||||| || || ||| || | | ||| || || || ||| Sbjct 115390 CGCGTTCGCTTGCGTGGAGGGGATTTTCTTCTCTGGAAGCTTCTGC-GCGATATTTTGGT 115332 Query 25946 TCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGAC 26004 | || || |||| ||||| ||| || ||||| || |||||| | ||| | || Sbjct 115331 TGAAAAAG-CGGGGTTGATGCCTGGGTTG-ACTTTCTCGAACGAGTTGATCTCGCGAGAT 115274 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCT--CCACAAAC 26062 || || || ||| | ||||| || ||| |||||| |||| ||||| | || Sbjct 115273 GAAGGCCTTCACTGCGATTTCGCGTGCTTGCTCT--ACGG----ATTGCTGAGGATGAAG 115220 Query 26063 CTTCTCAAGAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTT 26121 ||| |||| || ||| | ||| | || || ||||| ||||||| ||||||| Sbjct 115219 CTTAGCAAGGAACGAGTCAGGGGGATCGTGCGCGACGCGGTGGATATCGAGAGGGAGTTT 115160 Query 26122 CNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATAC 26181 |||| |||||| ||| |||||||| || Sbjct 115159 GTGTGCGACGCTCTGCCCTGCGCTTTGGTGGGAATGAACGGTGAACTTATGAGCCAGTAT 115100 Query 26182 ATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACG 26241 || |||| ||||| || | |||||| | | || || || | |||| | | Sbjct 115099 ATCGAGTTCGTGGCGGATCGGCTGCTGGACGCTTTAGGGTACGGTAGGATGTACAATGTG 115040 Query 26242 CCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAA 26301 | || ||||| || | ||||| || |||||| |||||||||| || ||||| || Sbjct 115039 GCGAATCCGTTTGATTGGATGGAGTTAATTTCGTTGCAAGGGAAGACGAATTTCTTCGAG 114980 Query 26302 AAGAGGGTCGGCGACTATCA 26321 ||||||||||| || || || Sbjct 114979 AAGAGGGTCGGTGAGTACCA 114960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928522386359360