Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq318 159 6e-34
seq715 116 7e-21
>seq318
Length=266665
Score = 159 bits (176), Expect = 6e-34
Identities = 548/852 (64%), Gaps = 20/852 (2%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||||||||||||||||||||| | ||| |||||| || || ||| | || ||
Sbjct 56430 ATCTGGGAGATGTACAAGAAGGCTGAGGCCTCCTTCTGGACTGCTGAGGAGGTCGACCTC 56371
Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596
|| ||||| | | |||| || | || || | | ||||| |||||| ||| ||
Sbjct 56370 TCCCAGGACCTCCGCCACTGGGACTCCCTCACCGATGGCGAGCGCCATTTTATCACCCAC 56311
Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGC-GAGAGATT 25655
|| | || ||||| || ||||| || || || || |||||| || ||| | | ||
Sbjct 56310 GTCCTCGCTTTCTTCGCCGCCTCCGACGGAATCGTCCTCGAGAACCT-TGCTGCTCGCTT 56252
Query 25656 CACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715
|| | ||| || ||| || ||| ||| ||||| || |||||||| ||||| ||
Sbjct 56251 CATGAAGGAGGTCCAGGTCGCGGAAGCCCGAGCCTTCTATGGCTTCCAGATCGCCATTGA 56192
Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGA 25775
|| | ||||| ||| |||| | || || ||| || || | ||| || ||
Sbjct 56191 GAACATTCACTCCGAGATGTACAGCCTCCTCCTCGAGACCTATATCAAGGACTCCGATGA 56132
Query 25776 GAGAGATC-GGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGT 25834
|| ||| | || || ||||||||| | ||| || | |||| ||||||| |
Sbjct 56131 GA-AGAACAAACTCTTCCATGCCATCGACATGGTGCCCTGCGTGAAGAAGAAGGCGGATT 56073
Query 25835 GGGCCATGAAGTGGATCAACAG-CCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893
|||| | ||||||||| | | | ||| || || | |||||||||| | || ||
Sbjct 56072 GGGCTCTCAAGTGGATCGGCGGTGCCGAGAGC----TTCGCCGAGCGGCTGATCGCGTTC 56017
Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCA 25952
||| || ||||| || || ||| ||| || ||| || || |||||||| ||| |
Sbjct 56016 GCTTGCGTCGAGGGGATTTTCTTCTCCGGGAGTTTCTGC-GCGATATTCTGGCTGAAGAA 55958
Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012
| ||| ||||| || ||| ||| || ||||| | ||| | |||||||||||
Sbjct 55957 GCGCGGGCTAATGCCGGGACTGACCTTCTCGAACGAATTGATCTCGCGAGACGAGGGTCT 55898
Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCT--CCACAAACCT-TCTCA 26069
||| | || || || ||| ||||||| | | |||| || || || | |
Sbjct 55897 ACACTGCGACTTCGCTTGCTTGCTCTA------CGAACTGCTGAAGACGAAGCTGAGTGA 55844
Query 26070 AGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129
||| ||| | | ||| | | || || ||||| ||||||| |||||||
Sbjct 55843 GGAGCGCGTGAAGGGGATCGTTAGGGATGCGGTGGACATCGAGAGGGAGTTTGTGTGCGA 55784
Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189
||||||||||| | || |||||||| ||||| ||||
Sbjct 55783 CGCGCTGCCGTGCGCCTTGGTGGGCATGAACGGCGACCTTATGAGCCAGTACATCGAGTT 55724
Query 26190 TGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCC 26249
||||| || | ||||| | ||| || || | | ||| || | | |||||
Sbjct 55723 CGTGGCAGATCGCTTGCTGGGGGCGCTCGGCTGCGGGAAGATATACGGTGTGGCCAACCC 55664
Query 26250 GTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGT 26309
||| |||| ||||| || ||| | | ||||||||||| ||||| || || |||||
Sbjct 55663 GTTTGACTGGATGGAGCTGATCTCGCTTCAGGGGAAGACCAATTTCTTCGAGAAAAGGGT 55604
Query 26310 CGGCGACTATCA 26321
|||||| || ||
Sbjct 55603 CGGCGAGTACCA 55592
>seq715
Length=381403
Score = 116 bits (128), Expect = 7e-21
Identities = 548/860 (64%), Gaps = 31/860 (4%)
Strand=Plus/Minus
Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533
|| || |||||||||||||||||||| | ||| |||||| ||||| ||| | ||
Sbjct 115800 GAAATCTGGGAGATGTACAAGAAGGCAGAGGCCTCCTTCTGGACAGCCGAGGAGGTCGAC 115741
Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593
|| || ||||| | |||| || |||| || ||||||| || || |||
Sbjct 115740 TTGTCCCAGGACCTCCCTCACTGGAACTCTCTCACCGCTGACGAGCGCCACTTCATCACC 115681
Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
|||| | |||||||| || ||||| ||||| || || ||| ||||| || ||
Sbjct 115680 CACGTCCTCGCATTCTTCGCCGCCTCCGATGGCATCGTCCTCGAAAATCTCGCCGGAAGG 115621
Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTG-TTTCTACGGTTTCCAGATGGCCAT 25712
|||| | ||| | ||| | ||||| | ||| || ||||| |||||||| |||||
Sbjct 115620 TTCATGAAGGAGATCCAGGTGGCGGAGG-CTCGTGCCTTATACGGCTTCCAGATCGCCAT 115562
Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGT 25769
||| || | ||||||||| ||||| | || ||| | || ||| | | ||
Sbjct 115561 CGAGAACATTCACTCTGAGATGTAT---AGTCTCCTGCTCGAAACCTACGTCAAGGATTC 115505
Query 25770 CGCCGAGAGAGATC-GGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828
| |||| ||| | || || |||||||| | || || || ||| |||||
Sbjct 115504 CAATGAGA-AGAACAAACTCTTCCACGCCATCGAAACGGTGCCGTGCGTCCAGAAGAAGG 115446
Query 25829 CGCGGTGGGCCATGAAGTGGATCAAC--AGCCAGAGCGCTACGTTTGGCGAGCGGCTGGT 25886
| |||||| |||| |||||| || | ||| || |||| | |||||||| |
Sbjct 115445 CTGAGTGGGCGCTGAAATGGATCGACGGATCCA-AG----TCGTTCGCGGAGCGGCTCCT 115391
Query 25887 AGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGG-TTCGTTTGCGGCCATCTTCTGGC 25945
|| || ||| |||||||| || || ||| || | | ||| || || || |||
Sbjct 115390 CGCGTTCGCTTGCGTGGAGGGGATTTTCTTCTCTGGAAGCTTCTGC-GCGATATTTTGGT 115332
Query 25946 TCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGAC 26004
| || || |||| ||||| ||| || ||||| || |||||| | ||| | ||
Sbjct 115331 TGAAAAAG-CGGGGTTGATGCCTGGGTTG-ACTTTCTCGAACGAGTTGATCTCGCGAGAT 115274
Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCT--CCACAAAC 26062
|| || || ||| | ||||| || ||| |||||| |||| ||||| | ||
Sbjct 115273 GAAGGCCTTCACTGCGATTTCGCGTGCTTGCTCT--ACGG----ATTGCTGAGGATGAAG 115220
Query 26063 CTTCTCAAGAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTT 26121
||| |||| || ||| | ||| | || || ||||| ||||||| |||||||
Sbjct 115219 CTTAGCAAGGAACGAGTCAGGGGGATCGTGCGCGACGCGGTGGATATCGAGAGGGAGTTT 115160
Query 26122 CNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATAC 26181
|||| |||||| ||| |||||||| ||
Sbjct 115159 GTGTGCGACGCTCTGCCCTGCGCTTTGGTGGGAATGAACGGTGAACTTATGAGCCAGTAT 115100
Query 26182 ATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACG 26241
|| |||| ||||| || | |||||| | | || || || | |||| | |
Sbjct 115099 ATCGAGTTCGTGGCGGATCGGCTGCTGGACGCTTTAGGGTACGGTAGGATGTACAATGTG 115040
Query 26242 CCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAA 26301
| || ||||| || | ||||| || |||||| |||||||||| || ||||| ||
Sbjct 115039 GCGAATCCGTTTGATTGGATGGAGTTAATTTCGTTGCAAGGGAAGACGAATTTCTTCGAG 114980
Query 26302 AAGAGGGTCGGCGACTATCA 26321
||||||||||| || || ||
Sbjct 114979 AAGAGGGTCGGTGAGTACCA 114960
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928522386359360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |