Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq752 356 2e-93 seq1263 309 3e-79 seq2510 116 4e-21 seq1519 102 8e-17 seq37 98.7 1e-15 seq5090 96.9 4e-15 >seq752 Length=193215 Score = 356 bits (394), Expect = 2e-93 Identities = 486/676 (72%), Gaps = 2/676 (0%) Strand=Plus/Minus Query 9881 CTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTTGTCACG 9940 || ||||| ||| ||| | || | || |||||| |||| || || || ||||| || Sbjct 189612 CTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACT 189553 Query 9941 AGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGG-TGCTAATTTCCTTACAGC 9999 ||||| ||||| ||| | || ||| || | || || ||| |||||| | || || Sbjct 189552 TCATGGTATACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGC 189494 Query 10000 GGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGA 10059 || || || || ||||| || | | | ||||| | | |||| || |||||||| Sbjct 189493 CGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGA 189434 Query 10060 GTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCT 10119 | || |||||||| || ||| ||| | || || || ||| | ||||| || || Sbjct 189433 AGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCT 189374 Query 10120 CCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGATTAAT 10179 |||||| | |||| |||| || ||||||||||| || |||| || || | | | Sbjct 189373 CCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGT 189314 Query 10180 TGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGT 10239 | | | |||||||| ||||| ||||| || |||| || |||||||||||||| ||| Sbjct 189313 TCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGT 189254 Query 10240 TTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGC 10299 ||||| || |||||||| || |||||| |||||||||||||||| ||||| || || || Sbjct 189253 ATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGC 189194 Query 10300 GGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTT 10359 ||| || || || ||| | || || |||| || |||||||||||||| | || || || Sbjct 189193 GGCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATT 189134 Query 10360 CCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGT 10419 ||||||||||||||||| ||| || |||| | ||| || |||| || ||||| || | Sbjct 189133 TCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGC 189074 Query 10420 CACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGA 10479 ||||||||||| || | | | ||||||| || ||||| || ||| || ||| | Sbjct 189073 TACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAA 189014 Query 10480 TAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGAT 10539 || |||| ||||| || ||||| ||||| || |||||||| || |||||||| || Sbjct 189013 CCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAAT 188954 Query 10540 ATTTGGAATTGCTTTT 10555 ||||| |||||||| Sbjct 188953 CTTTGGGGTTGCTTTT 188938 >seq1263 Length=120960 Score = 309 bits (342), Expect = 3e-79 Identities = 407/562 (72%), Gaps = 2/562 (0%) Strand=Plus/Plus Query 9892 TGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTTGTCACGAGTTGGTACAC 9951 ||| ||| | || | || |||||| |||| || || || ||||| || ||||| || Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865 Query 9952 TCACGGACTTGCAAGTAGTTACCTTGAGGG-TGCTAATTTCCTTACAGCGGCTGTCTCAA 10010 ||| ||| | || ||| || | || || ||| |||||| | || || || || || | Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTTCGA 54924 Query 10011 CGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGAG 10070 | ||||| || | | | ||||| | | |||| ||||||||||| | || |||| Sbjct 54925 CTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGAG 54984 Query 10071 ATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCT 10130 |||| || ||| ||| | || || || ||| | ||||| || |||||||| || | Sbjct 54985 ATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCTT 55044 Query 10131 TCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGATTAATTGGAATCCGAC 10190 ||| |||| || ||||||||||| || ||||| || || | | || | | |||| Sbjct 55045 TCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATTGCGAC 55104 Query 10191 CTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCT 10250 |||| ||||| ||||| || |||| || |||||||||||||| ||| ||||| || | Sbjct 55105 CTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTT 55164 Query 10251 ATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCC 10310 ||||||| || |||||| |||||||||||||||| ||||| || || ||||| || || | Sbjct 55165 ATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTTC 55224 Query 10311 GCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGG 10370 | ||| | || || |||| || |||||||||||||| | || || || |||||||||| Sbjct 55225 GATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGG 55284 Query 10371 GAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAA 10430 ||||||| ||| || |||| | ||| || |||| || ||||| || | | |||||||| Sbjct 55285 GAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGAAA 55344 Query 10431 ACACACTTTATCAAGATGGCGA 10452 | || | | | ||||||| || Sbjct 55345 ATACTTTATTTGAAGATGGTGA 55366 >seq2510 Length=74850 Score = 116 bits (128), Expect = 4e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 10634 GGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAA 10693 ||||| ||||| || || || || || || || | || || || ||| | || | ||| Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941 Query 10694 GATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCA 10753 ||||||||||||||||| ||||| || || ||||| ||| | ||||||||| ||||||| Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881 Query 10754 TGGATGGCACCAGTTGACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 |||||||| | || || || || |||| | || | ||||| || || ||||| || Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 56822 >seq1519 Length=169030 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 8623 TGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTAT 8682 ||||| ||||||||| || ||| ||||||| |||||| | || || ||| | ||||| Sbjct 82757 TGGATTGCTGTTGCATATTCAGCTTCTGTTGCAGCTGCTACCGCCGTTTTCATGATCTAT 82698 Query 8683 CCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAAC 8742 || ||||||| || || ||||||||||||||| | || ||||| |||| |||||| Sbjct 82697 CCAATTGGTCATGGGAGTTTTTCTGATGGTATGCCTTTAGGAATCTCTAGTACTTTCAAC 82638 Query 8743 TATATGCTTGTCTTCC 8758 | |||| || | |||| Sbjct 82637 TTTATGATTATATTCC 82622 >seq37 Length=530226 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/226 (70%), Gaps = 1/226 (0%) Strand=Plus/Plus Query 10484 ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTT 10543 || |||| | ||| || ||||| ||||| || |||||||| || |||||||| || ||| Sbjct 49863 ACCCAAGTTGGAGAAACTTATTCAATGGTCACCGCTAACCGCTT-TGGTCCCAAATCTTT 49921 Query 10544 GGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATG 10603 || || |||| ||||||| | ||| | ||||| |||||| ||||||| || | Sbjct 49922 GGGGTTTTTTTTTCCAATAAATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACC 49981 Query 10604 GGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGAT 10663 ||| | |||| || | || | | ||||| ||| | || || || | || | Sbjct 49982 GGTTTATGGATGAGAGCTCCTAGAGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGC 50041 Query 10664 TTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGA 10709 || || || ||||| ||| | || | ||||||||||||||| ||| Sbjct 50042 TTCGTTTCCCAAGAAATCTGTGCAGCGGAAGATCCTGAATTTAAGA 50087 >seq5090 Length=30266 Score = 96.9 bits (106), Expect = 4e-15 Identities = 105/140 (75%), Gaps = 7/140 (5%) Strand=Plus/Plus Query 8580 GGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATA 8639 |||| |||| ||||||||| || ||| | || |||| ||||||||| ||||||||| Sbjct 12992 GGGTAGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCACCCTTGGATCACTGTTGCATA 13051 Query 8640 CTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTC 8699 || ||||||||||| || || || ||| | ||||||| |||||||||| Sbjct 13052 TTCAGCTCCTGTTGCAGC-------GCCGTTTTCTTGATCTATCCAATTGGTCAAGGAAG 13104 Query 8700 GTTCTCTGATGGTATGCCTC 8719 || |||||||||||||||| Sbjct 13105 CTTTTCTGATGGTATGCCTC 13124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516300723336000