Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_019516.1
Length=161440
Score E
Sequences producing significant alignments: (Bits) Value
seq752 356 2e-93
seq1263 309 3e-79
seq2510 116 4e-21
seq1519 102 8e-17
seq37 98.7 1e-15
seq5090 96.9 4e-15
>seq752
Length=193215
Score = 356 bits (394), Expect = 2e-93
Identities = 486/676 (72%), Gaps = 2/676 (0%)
Strand=Plus/Minus
Query 9881 CTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTTGTCACG 9940
|| ||||| ||| ||| | || | || |||||| |||| || || || ||||| ||
Sbjct 189612 CTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACT 189553
Query 9941 AGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGG-TGCTAATTTCCTTACAGC 9999
||||| ||||| ||| | || ||| || | || || ||| |||||| | || ||
Sbjct 189552 TCATGGTATACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGC 189494
Query 10000 GGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGA 10059
|| || || || ||||| || | | | ||||| | | |||| || ||||||||
Sbjct 189493 CGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGA 189434
Query 10060 GTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCT 10119
| || |||||||| || ||| ||| | || || || ||| | ||||| || ||
Sbjct 189433 AGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCT 189374
Query 10120 CCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGATTAAT 10179
|||||| | |||| |||| || ||||||||||| || |||| || || | | |
Sbjct 189373 CCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGT 189314
Query 10180 TGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGT 10239
| | | |||||||| ||||| ||||| || |||| || |||||||||||||| |||
Sbjct 189313 TCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGT 189254
Query 10240 TTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGC 10299
||||| || |||||||| || |||||| |||||||||||||||| ||||| || || ||
Sbjct 189253 ATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGC 189194
Query 10300 GGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTT 10359
||| || || || ||| | || || |||| || |||||||||||||| | || || ||
Sbjct 189193 GGCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATT 189134
Query 10360 CCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGT 10419
||||||||||||||||| ||| || |||| | ||| || |||| || ||||| || |
Sbjct 189133 TCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGC 189074
Query 10420 CACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGA 10479
||||||||||| || | | | ||||||| || ||||| || ||| || ||| |
Sbjct 189073 TACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAA 189014
Query 10480 TAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGAT 10539
|| |||| ||||| || ||||| ||||| || |||||||| || |||||||| ||
Sbjct 189013 CCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAAT 188954
Query 10540 ATTTGGAATTGCTTTT 10555
||||| ||||||||
Sbjct 188953 CTTTGGGGTTGCTTTT 188938
>seq1263
Length=120960
Score = 309 bits (342), Expect = 3e-79
Identities = 407/562 (72%), Gaps = 2/562 (0%)
Strand=Plus/Plus
Query 9892 TGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTTGTCACGAGTTGGTACAC 9951
||| ||| | || | || |||||| |||| || || || ||||| || ||||| ||
Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865
Query 9952 TCACGGACTTGCAAGTAGTTACCTTGAGGG-TGCTAATTTCCTTACAGCGGCTGTCTCAA 10010
||| ||| | || ||| || | || || ||| |||||| | || || || || || |
Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTTCGA 54924
Query 10011 CGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGAG 10070
| ||||| || | | | ||||| | | |||| ||||||||||| | || ||||
Sbjct 54925 CTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGAG 54984
Query 10071 ATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCT 10130
|||| || ||| ||| | || || || ||| | ||||| || |||||||| || |
Sbjct 54985 ATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCTT 55044
Query 10131 TCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGATTAATTGGAATCCGAC 10190
||| |||| || ||||||||||| || ||||| || || | | || | | ||||
Sbjct 55045 TCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATTGCGAC 55104
Query 10191 CTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCT 10250
|||| ||||| ||||| || |||| || |||||||||||||| ||| ||||| || |
Sbjct 55105 CTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTT 55164
Query 10251 ATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCC 10310
||||||| || |||||| |||||||||||||||| ||||| || || ||||| || || |
Sbjct 55165 ATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTTC 55224
Query 10311 GCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGG 10370
| ||| | || || |||| || |||||||||||||| | || || || ||||||||||
Sbjct 55225 GATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGG 55284
Query 10371 GAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAA 10430
||||||| ||| || |||| | ||| || |||| || ||||| || | | ||||||||
Sbjct 55285 GAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGAAA 55344
Query 10431 ACACACTTTATCAAGATGGCGA 10452
| || | | | ||||||| ||
Sbjct 55345 ATACTTTATTTGAAGATGGTGA 55366
>seq2510
Length=74850
Score = 116 bits (128), Expect = 4e-21
Identities = 133/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 10634 GGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAA 10693
||||| ||||| || || || || || || || | || || || ||| | || | |||
Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941
Query 10694 GATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCA 10753
||||||||||||||||| ||||| || || ||||| ||| | ||||||||| |||||||
Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881
Query 10754 TGGATGGCACCAGTTGACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812
|||||||| | || || || || |||| | || | ||||| || || ||||| ||
Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 56822
>seq1519
Length=169030
Score = 102 bits (112), Expect = 8e-17
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 8623 TGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTAT 8682
||||| ||||||||| || ||| ||||||| |||||| | || || ||| | |||||
Sbjct 82757 TGGATTGCTGTTGCATATTCAGCTTCTGTTGCAGCTGCTACCGCCGTTTTCATGATCTAT 82698
Query 8683 CCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAAC 8742
|| ||||||| || || ||||||||||||||| | || ||||| |||| ||||||
Sbjct 82697 CCAATTGGTCATGGGAGTTTTTCTGATGGTATGCCTTTAGGAATCTCTAGTACTTTCAAC 82638
Query 8743 TATATGCTTGTCTTCC 8758
| |||| || | ||||
Sbjct 82637 TTTATGATTATATTCC 82622
>seq37
Length=530226
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/226 (70%), Gaps = 1/226 (0%)
Strand=Plus/Plus
Query 10484 ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTT 10543
|| |||| | ||| || ||||| ||||| || |||||||| || |||||||| || |||
Sbjct 49863 ACCCAAGTTGGAGAAACTTATTCAATGGTCACCGCTAACCGCTT-TGGTCCCAAATCTTT 49921
Query 10544 GGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATG 10603
|| || |||| ||||||| | ||| | ||||| |||||| ||||||| || |
Sbjct 49922 GGGGTTTTTTTTTCCAATAAATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACC 49981
Query 10604 GGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGAT 10663
||| | |||| || | || | | ||||| ||| | || || || | || |
Sbjct 49982 GGTTTATGGATGAGAGCTCCTAGAGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGC 50041
Query 10664 TTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGA 10709
|| || || ||||| ||| | || | ||||||||||||||| |||
Sbjct 50042 TTCGTTTCCCAAGAAATCTGTGCAGCGGAAGATCCTGAATTTAAGA 50087
>seq5090
Length=30266
Score = 96.9 bits (106), Expect = 4e-15
Identities = 105/140 (75%), Gaps = 7/140 (5%)
Strand=Plus/Plus
Query 8580 GGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATA 8639
|||| |||| ||||||||| || ||| | || |||| ||||||||| |||||||||
Sbjct 12992 GGGTAGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCACCCTTGGATCACTGTTGCATA 13051
Query 8640 CTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTC 8699
|| ||||||||||| || || || ||| | ||||||| ||||||||||
Sbjct 13052 TTCAGCTCCTGTTGCAGC-------GCCGTTTTCTTGATCTATCCAATTGGTCAAGGAAG 13104
Query 8700 GTTCTCTGATGGTATGCCTC 8719
|| ||||||||||||||||
Sbjct 13105 CTTTTCTGATGGTATGCCTC 13124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 516300723336000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |