Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_020486.1
Length=171211
Score E
Sequences producing significant alignments: (Bits) Value
seq752 309 3e-79
seq1263 268 1e-66
seq587 113 5e-20
seq371 105 7e-18
seq124 102 9e-17
seq5090 87.8 2e-12
seq5294 82.4 8e-11
>seq752
Length=193215
Score = 309 bits (342), Expect = 3e-79
Identities = 479/678 (71%), Gaps = 6/678 (1%)
Strand=Plus/Minus
Query 162183 CTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACG 162242
|| ||||| ||| ||| | ||| | ||||| ||| |||| || || || || || ||
Sbjct 189612 CTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACT 189553
Query 162243 AGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTG-AGGGTGCAAACTTTCTT-ACTG 162300
||||||||||| ||| | || ||||||||| | | ||| ||||| |||||| || |
Sbjct 189552 TCATGGTATACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCG 189495
Query 162301 CGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTG 162360
| |||||||| ||||| || | | | | ||||| | || | ||||| |||||||
Sbjct 189494 CCGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTG 189435
Query 162361 AGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGC 162420
| | ||||| || || | || ||||||||| | || || || ||||| ||||| || |
Sbjct 189434 AAGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTC 189375
Query 162421 TCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCAC-GACTT 162479
||||||| | || | ||| |||||||| ||| | || || ||||||| || | | ||
Sbjct 189374 TCCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTG 189315
Query 162480 ATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAGT 162539
|| | | || ||||| ||||| || || ||||| | ||| |||||||| || ||| |
Sbjct 189314 TTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCT 189256
Query 162540 GTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTC 162599
|| || || || ||||| | || || || |||||||| || || || || ||
Sbjct 189255 GTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTA 189196
Query 162600 GCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCT 162659
|| || || || |||||| | || || |||||||||| ||||| ||||| | || ||
Sbjct 189195 GCGGCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCA 189136
Query 162660 TTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCATGGA 162719
||||| |||||||| || || ||| | | || | || |||| | ||||| |||||
Sbjct 189135 TTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGT 189076
Query 162720 GTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAAAGCATTT 162779
| || || |||||||| | | |||||||| || ||||| || || || |||
Sbjct 189075 GCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTT 189016
Query 162780 GACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGTCACAG 162839
|| | || || | |||||||| ||||| ||||| || || |||||||| ||||| ||
Sbjct 189015 AACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAA 188956
Query 162840 ATTTTCGGTATTGCTTTT 162857
|| || || ||||||||
Sbjct 188955 ATCTTTGGGGTTGCTTTT 188938
>seq1263
Length=120960
Score = 268 bits (296), Expect = 1e-66
Identities = 411/580 (71%), Gaps = 6/580 (1%)
Strand=Plus/Plus
Query 162194 TGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATAC 162253
||| ||| | ||| | ||||| ||| |||| || || || || || || ||||||||
Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865
Query 162254 TCACGGACTTGCGAGTTCCTATCTTG-AGGGTGCAAACTTTCTT-ACTGCGGCAGTTTCT 162311
||| ||| | || ||||||||| | | ||| ||||| |||||| || || ||||||||
Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 54923
Query 162312 ACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGG 162371
||||| || | | | | ||||| | || | |||||||||||||| | |||||
Sbjct 54924 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGA 54983
Query 162372 GACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCC 162431
|| || | || ||||||||| | || || || ||||| ||||| || |||||||| ||
Sbjct 54984 GATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCT 55043
Query 162432 TTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCAC-GACTTATCGGTATTCG 162490
|| | ||| |||||||| ||| | || || |||||||| || | | || || | | ||
Sbjct 55044 TTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCG 55102
Query 162491 TCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTAT 162550
||||| ||||| || || ||||| | ||| |||||||| || ||| ||| || || ||
Sbjct 55103 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 55162
Query 162551 CTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTT 162610
||||| | || || || |||||||| || || || || || || || || ||
Sbjct 55163 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 55222
Query 162611 CCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCTTTTCACATGAT 162670
|||||| | || || |||||||||| ||||| ||||| | || || ||||| |||||
Sbjct 55223 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 55282
Query 162671 GGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCATGGAGTGACAGTTGA 162730
||| || || ||| | | || | || |||| | ||||| ||||| | | || ||
Sbjct 55283 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGA 55342
Query 162731 AAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTT 162770
|||||| | | |||||||| || ||||| || |||
Sbjct 55343 AAATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382
>seq587
Length=401750
Score = 113 bits (124), Expect = 5e-20
Identities = 124/165 (75%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 161698 AGCACCATGGCATTCAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAG 161757
||||| ||||| |||||||| ||||||||||| |||||||| ||| | |||||||||||
Sbjct 44406 AGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA 44465
Query 161758 GGTAAAGTTATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTG 161817
||| || || || || | || || || | || | || | ||||| ||||||||
Sbjct 44466 GGTCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAGTT 44525
Query 161818 ATGCACGAGCGCAATGCTCACAACTTCCCTCTTGACCTTGCTGCT 161862
||||| || | ||| |||| ||||| || | ||||| ||||||
Sbjct 44526 ATGCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570
>seq371
Length=442687
Score = 105 bits (116), Expect = 7e-18
Identities = 169/241 (70%), Gaps = 4/241 (2%)
Strand=Plus/Minus
Query 158320 TTCCCGTGTGAAGACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTC 158379
||| |||| |||||| || || || || |||| |||||||| |||| |||| ||
Sbjct 304579 TTCACGTGCCCAGACGATCAATATATTCTCGACGAGGCTGAGGAGAAGGGTATCGATCTG 304520
Query 158380 AATTACTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACC 158439
||||| ||| | ||||| |||| || || || || || || | ||| || |
Sbjct 304519 CCCTACTCTTGCAGGGCAGGTTCTTGCTCCTCCTGCGCCGGCAAGGTGGTCGAAGGATCG 304460
Query 158440 GTAGACCAAAGCGAC--CAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTC 158497
|| |||||| || ||| |||||| || ||||| || | | ||||||| |||
Sbjct 304459 GTGGACCAATCTGATGGCAG--CTTCCTTGATGATGATCAGCTTGGAGCTGGTTTTGTTC 304402
Query 158498 TGACTTGTGTTTCTTATCCTACAAGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAAC 158557
||||||||||| ||| |||||| ||||| ||| |||||||| ||||||| || || |
Sbjct 304401 TGACTTGTGTTGCTTTTCCTACCAGTGACGTTGTCATTGAGACACACAAGGAGGAAGATC 304342
Query 158558 T 158558
|
Sbjct 304341 T 304341
>seq124
Length=378598
Score = 102 bits (112), Expect = 9e-17
Identities = 149/211 (71%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 158339 AGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAG 158398
||| ||||||||||||||||||| | || || | || || ||||||||| | || |
Sbjct 235674 AGTTCATCCTTGACGCAGCTGAGAATGCAGGGATGGACCTGCCATACTCGTGCAGGGCTG 235733
Query 158399 GCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGT 158458
| ||||| || | || ||||| || |||| || || || || ||| ||| ||
Sbjct 235734 GGGCTTGCTCAACATGCGCGGGGAAGATCGTTGAGGGAACAGTGGATCAATCTGACGGGT 235793
Query 158459 CCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTA 158518
| ||||| || || |||||||| || |||| | ||||| || ||||| ||||| |
Sbjct 235794 CATTCCTTGATGACGACCAAATGGAGAAGGGTTATGTGCTGACATGCGTTTCATATCCAA 235853
Query 158519 CAAGTGATTGTGTGATTGAGACTGACAAGGA 158549
| |||||||||||| | || |||||||
Sbjct 235854 CTTCGGATTGTGTGATTCATACCCACAAGGA 235884
>seq5090
Length=30266
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/140 (74%), Gaps = 7/140 (5%)
Strand=Plus/Plus
Query 161208 GGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATA 161267
|||| |||||||||||||| || |||| |||| |||| |||||||| || |||||
Sbjct 12992 GGGTAGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCACCCTTGGATCACTGTTGCATA 13051
Query 161268 CTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTC 161327
|| |||||||| |||||| || || ||| || ||||||| | ||||||||
Sbjct 13052 TTCAGCTCCTGT---TGCAGC----GCCGTTTTCTTGATCTATCCAATTGGTCAAGGAAG 13104
Query 161328 TTTCTCTGATGCAATGCCTC 161347
|| ||||||| |||||||
Sbjct 13105 CTTTTCTGATGGTATGCCTC 13124
>seq5294
Length=25541
Score = 82.4 bits (90), Expect = 8e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 157691 GGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAAT 157750
||| |||||||||||||||||||||| ||| |||||| ||| | ||| | ||||| |||
Sbjct 22655 GGGATGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACAAAATGTCACGGGTTCAAAT 22714
Query 157751 CCTGTCACCCCGACTTAT 157768
||||||| ||| || |||
Sbjct 22715 CCTGTCATCCCTACCTAT 22732
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547557070100040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |