Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq752 309 3e-79 seq1263 268 1e-66 seq587 113 5e-20 seq371 105 7e-18 seq124 102 9e-17 seq5090 87.8 2e-12 seq5294 82.4 8e-11 >seq752 Length=193215 Score = 309 bits (342), Expect = 3e-79 Identities = 479/678 (71%), Gaps = 6/678 (1%) Strand=Plus/Minus Query 162183 CTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACG 162242 || ||||| ||| ||| | ||| | ||||| ||| |||| || || || || || || Sbjct 189612 CTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACT 189553 Query 162243 AGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTG-AGGGTGCAAACTTTCTT-ACTG 162300 ||||||||||| ||| | || ||||||||| | | ||| ||||| |||||| || | Sbjct 189552 TCATGGTATACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCG 189495 Query 162301 CGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTG 162360 | |||||||| ||||| || | | | | ||||| | || | ||||| ||||||| Sbjct 189494 CCGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTG 189435 Query 162361 AGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGC 162420 | | ||||| || || | || ||||||||| | || || || ||||| ||||| || | Sbjct 189434 AAGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTC 189375 Query 162421 TCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCAC-GACTT 162479 ||||||| | || | ||| |||||||| ||| | || || ||||||| || | | || Sbjct 189374 TCCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTG 189315 Query 162480 ATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAGT 162539 || | | || ||||| ||||| || || ||||| | ||| |||||||| || ||| | Sbjct 189314 TTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCT 189256 Query 162540 GTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTC 162599 || || || || ||||| | || || || |||||||| || || || || || Sbjct 189255 GTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTA 189196 Query 162600 GCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCT 162659 || || || || |||||| | || || |||||||||| ||||| ||||| | || || Sbjct 189195 GCGGCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCA 189136 Query 162660 TTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCATGGA 162719 ||||| |||||||| || || ||| | | || | || |||| | ||||| ||||| Sbjct 189135 TTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGT 189076 Query 162720 GTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAAAGCATTT 162779 | || || |||||||| | | |||||||| || ||||| || || || ||| Sbjct 189075 GCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTT 189016 Query 162780 GACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGTCACAG 162839 || | || || | |||||||| ||||| ||||| || || |||||||| ||||| || Sbjct 189015 AACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAA 188956 Query 162840 ATTTTCGGTATTGCTTTT 162857 || || || |||||||| Sbjct 188955 ATCTTTGGGGTTGCTTTT 188938 >seq1263 Length=120960 Score = 268 bits (296), Expect = 1e-66 Identities = 411/580 (71%), Gaps = 6/580 (1%) Strand=Plus/Plus Query 162194 TGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATAC 162253 ||| ||| | ||| | ||||| ||| |||| || || || || || || |||||||| Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865 Query 162254 TCACGGACTTGCGAGTTCCTATCTTG-AGGGTGCAAACTTTCTT-ACTGCGGCAGTTTCT 162311 ||| ||| | || ||||||||| | | ||| ||||| |||||| || || |||||||| Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 54923 Query 162312 ACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGG 162371 ||||| || | | | | ||||| | || | |||||||||||||| | ||||| Sbjct 54924 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGA 54983 Query 162372 GACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCC 162431 || || | || ||||||||| | || || || ||||| ||||| || |||||||| || Sbjct 54984 GATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCT 55043 Query 162432 TTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCAC-GACTTATCGGTATTCG 162490 || | ||| |||||||| ||| | || || |||||||| || | | || || | | || Sbjct 55044 TTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCG 55102 Query 162491 TCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTAT 162550 ||||| ||||| || || ||||| | ||| |||||||| || ||| ||| || || || Sbjct 55103 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 55162 Query 162551 CTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTT 162610 ||||| | || || || |||||||| || || || || || || || || || Sbjct 55163 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 55222 Query 162611 CCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCTTTTCACATGAT 162670 |||||| | || || |||||||||| ||||| ||||| | || || ||||| ||||| Sbjct 55223 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 55282 Query 162671 GGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCATGGAGTGACAGTTGA 162730 ||| || || ||| | | || | || |||| | ||||| ||||| | | || || Sbjct 55283 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGA 55342 Query 162731 AAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTT 162770 |||||| | | |||||||| || ||||| || ||| Sbjct 55343 AAATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382 >seq587 Length=401750 Score = 113 bits (124), Expect = 5e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 161698 AGCACCATGGCATTCAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAG 161757 ||||| ||||| |||||||| ||||||||||| |||||||| ||| | ||||||||||| Sbjct 44406 AGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA 44465 Query 161758 GGTAAAGTTATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTG 161817 ||| || || || || | || || || | || | || | ||||| |||||||| Sbjct 44466 GGTCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAGTT 44525 Query 161818 ATGCACGAGCGCAATGCTCACAACTTCCCTCTTGACCTTGCTGCT 161862 ||||| || | ||| |||| ||||| || | ||||| |||||| Sbjct 44526 ATGCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570 >seq371 Length=442687 Score = 105 bits (116), Expect = 7e-18 Identities = 169/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 158320 TTCCCGTGTGAAGACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTC 158379 ||| |||| |||||| || || || || |||| |||||||| |||| |||| || Sbjct 304579 TTCACGTGCCCAGACGATCAATATATTCTCGACGAGGCTGAGGAGAAGGGTATCGATCTG 304520 Query 158380 AATTACTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACC 158439 ||||| ||| | ||||| |||| || || || || || || | ||| || | Sbjct 304519 CCCTACTCTTGCAGGGCAGGTTCTTGCTCCTCCTGCGCCGGCAAGGTGGTCGAAGGATCG 304460 Query 158440 GTAGACCAAAGCGAC--CAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTC 158497 || |||||| || ||| |||||| || ||||| || | | ||||||| ||| Sbjct 304459 GTGGACCAATCTGATGGCAG--CTTCCTTGATGATGATCAGCTTGGAGCTGGTTTTGTTC 304402 Query 158498 TGACTTGTGTTTCTTATCCTACAAGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAAC 158557 ||||||||||| ||| |||||| ||||| ||| |||||||| ||||||| || || | Sbjct 304401 TGACTTGTGTTGCTTTTCCTACCAGTGACGTTGTCATTGAGACACACAAGGAGGAAGATC 304342 Query 158558 T 158558 | Sbjct 304341 T 304341 >seq124 Length=378598 Score = 102 bits (112), Expect = 9e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 158339 AGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAG 158398 ||| ||||||||||||||||||| | || || | || || ||||||||| | || | Sbjct 235674 AGTTCATCCTTGACGCAGCTGAGAATGCAGGGATGGACCTGCCATACTCGTGCAGGGCTG 235733 Query 158399 GCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGT 158458 | ||||| || | || ||||| || |||| || || || || ||| ||| || Sbjct 235734 GGGCTTGCTCAACATGCGCGGGGAAGATCGTTGAGGGAACAGTGGATCAATCTGACGGGT 235793 Query 158459 CCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTA 158518 | ||||| || || |||||||| || |||| | ||||| || ||||| ||||| | Sbjct 235794 CATTCCTTGATGACGACCAAATGGAGAAGGGTTATGTGCTGACATGCGTTTCATATCCAA 235853 Query 158519 CAAGTGATTGTGTGATTGAGACTGACAAGGA 158549 | |||||||||||| | || ||||||| Sbjct 235854 CTTCGGATTGTGTGATTCATACCCACAAGGA 235884 >seq5090 Length=30266 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 7/140 (5%) Strand=Plus/Plus Query 161208 GGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATA 161267 |||| |||||||||||||| || |||| |||| |||| |||||||| || ||||| Sbjct 12992 GGGTAGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCACCCTTGGATCACTGTTGCATA 13051 Query 161268 CTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTC 161327 || |||||||| |||||| || || ||| || ||||||| | |||||||| Sbjct 13052 TTCAGCTCCTGT---TGCAGC----GCCGTTTTCTTGATCTATCCAATTGGTCAAGGAAG 13104 Query 161328 TTTCTCTGATGCAATGCCTC 161347 || ||||||| ||||||| Sbjct 13105 CTTTTCTGATGGTATGCCTC 13124 >seq5294 Length=25541 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 157691 GGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAAT 157750 ||| |||||||||||||||||||||| ||| |||||| ||| | ||| | ||||| ||| Sbjct 22655 GGGATGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACAAAATGTCACGGGTTCAAAT 22714 Query 157751 CCTGTCACCCCGACTTAT 157768 ||||||| ||| || ||| Sbjct 22715 CCTGTCATCCCTACCTAT 22732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547557070100040