Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_020837.1
Length=198013
Score E
Sequences producing significant alignments: (Bits) Value
seq752 356 3e-93
seq1263 302 6e-77
seq37 114 2e-20
seq587 100 4e-16
seq124 89.7 7e-13
seq5090 82.4 1e-10
>seq752
Length=193215
Score = 356 bits (394), Expect = 3e-93
Identities = 491/680 (72%), Gaps = 10/680 (1%)
Strand=Plus/Plus
Query 101982 AAATGCAATACCAAAGATTTGAGACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTC 102041
||| |||| ||||||||||| ||||| || ||||| || || |||||||||||||| ||
Sbjct 188938 AAAAGCAACCCCAAAGATTTGGGACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTC 188997
Query 102042 TTCCTCTTGTGTGGAATCGAATGCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAG 102101
||| |||| || | | || || ||| || ||||| ||||||||||||| | |
Sbjct 188998 TTCAGCTTGGGTTGGGTTAAACGCACGGAATGTATTTGCACCATCACCATCTTCAAATAA 189057
Query 102102 AGTGTTCTCCACAGTGACACCGTGGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGC 102161
||| || || ||||| |||| ||||| || | ||||| || | |||| | ||| ||
Sbjct 189058 AGTATTTTCTACAGTAGCACCATGGATAGCGCATAGCAGAGCCGCGCCCAATACACCGGC 189117
Query 102162 AACACCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAG 102221
||| ||||||||||| |||||||| | ||||| ||||| || || || | || || |
Sbjct 189118 AACTCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTGGAAAAAAAGGAT 189177
Query 102222 GAATCTAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAG 102281
||||| |||||| || || |||||||| ||||||||||||||||| ||||| || ||
Sbjct 189178 GAATCGAAATATAGCCGCTACACCAAAACTGGGCGCAAAGAACCAACCAGACTGACCTAG 189237
Query 102282 AGGATAGATGAGAAACACACTGACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATT 102341
||||| || || || ||| ||||||||||| || || ||||||| || || |||||
Sbjct 189238 TGGATAAATCAGGAATACAGAAACAAAAACAGCAATTGGAGCAGAGAATGCGATTGCATT 189297
Query 102342 GTACGGACGAATTCCAATTAACCTAGCCAACTCGAATTGACGAAGCATGAAACCAATGAG 102401
|| || || | | || ||| ||| | || | |||||| | ||| ||||| || ||
Sbjct 189298 ATAAGGTCGCAATTGAACAGACCGAGCAAGTTCAATTTGACGTAACATAAAACCTATTAG 189357
Query 102402 GGCAAATGCACCGTGGAGAGCCACAAAAGCCCAGAGTCC-CCCAAGTTGGACCCACCTGA 102460
| || | ||||||||||| ||||| | ||| || || ||||| | | ||| || |
Sbjct 189358 TCCGAAAGTGCCGTGGAGAGCAACAAACGTCCACAGACCGCCCAATTGGCACCAACGAGT 189417
Query 102461 CGAAATCTCCTTGAGCTTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGAGTCAG 102520
| ||||||||||| ||||||||||| || |||| | | ||||| | | | | |
Sbjct 189418 C-AAATCTCCTTGGGCTTCAGGACCTCATAGTAACAACAACGAATGTGCTAAACTATTGG 189476
Query 102521 CAGGCGTTGACACAGCAGCTGTAAGGAAATTAGCA-CCTTC---AAGGTAACTAGACGCA 102576
|||| || || || || || || | |||||| ||| ||||| | | ||||| ||
Sbjct 189477 CAGGAGTCGAAACTGCGGCGGTTAAGAAATT-GCATCCTTCCAAATAGGAACTA---GCC 189532
Query 102577 AGCCCGTGGGTATACCAGGAAGTAGCAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCG 102636
| || || |||||||| ||||| |||| || || || |||| ||||||||| | |||
Sbjct 189533 AATCCATGAGTATACCATGAAGTTACAAAGGTTGTACCTGTAAACCAGCCCCCTAAAGCG 189592
Query 102637 AGATAAGCAGTGGGAAAAAG 102656
| ||| ||| ||||| ||
Sbjct 189593 AAATAGGCACAAGGAAAGAG 189612
>seq1263
Length=120960
Score = 302 bits (334), Expect = 6e-77
Identities = 417/580 (72%), Gaps = 8/580 (1%)
Strand=Plus/Minus
Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129
|| || ||||| ||||||||||||| | | ||| || || ||| | |||| |||||
Sbjct 55381 AATGTATTTGCAGCATCACCATCTTCAAATAAAGTATTTTCTACAATAGCACCATGGATA 55322
Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189
|| | ||||| || | |||| | ||| ||||| ||||||||||| |||||||| |
Sbjct 55321 GCGCATAGCAGAGCCGCGCCCAATACACCGGCAACTCCCATCATATGAAATGGGTTCAAT 55262
Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249
||||| ||||| || || || | || || | ||||| |||||| || || ||||||||
Sbjct 55261 GTCCAATTATGAAACCCTTGGAAAAAAAGGATGAATCGAAATATAGCCGCTACACCAAAA 55202
Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309
||||||||||||||||| ||||| || || ||||| || || || ||| ||||||
Sbjct 55201 CTGGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATCAGGAATACAGAAACAAAA 55142
Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369
||||| || || ||||||| || || ||||| || || || | | || ||| |||
Sbjct 55141 ACAGCAATTGGAGCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAACAGACCGAGCA 55082
Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429
| || |||||||| | ||| ||||| || || | || || ||||||||||| |||||
Sbjct 55081 AGTTCAAATTGACGTAACATAAAACCTATTAGTCCGAAAGCGCCGTGGAGAGCAACAAAC 55022
Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489
| ||| || || || | |||| ||| | ||||||||||| ||||||||||||||
Sbjct 55021 GTCCACAGACCGCCCAATTGGCACCAACGAGTNAAATCTCCTTGGGCTTCAGGACCCCAT 54962
Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549
|||| | | ||||| | | | | ||||| || || || || || || | ||||
Sbjct 54961 AGTAACAACAACGAATGTGCTAAACTATTGGCAGGAGTCGAAACTGCGGCGGTTAAGAAA 54902
Query 102550 TTAGCA-CCTTC---AAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAA 102605
|| ||| ||||| | | ||||| || | || || |||||||| ||||| ||||
Sbjct 54901 TT-GCATCCTTCCAAATAGGAACTA---GCCAATCCATGAGTATACCATGAAGTTACAAA 54846
Query 102606 CGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCA 102645
|| || || |||| ||||||||| | |||| ||| |||
Sbjct 54845 GGTTGTACCTGTAAACCAGCCCCCTAAAGCGAAATAGGCA 54806
>seq37
Length=530226
Score = 114 bits (126), Expect = 2e-20
Identities = 187/266 (70%), Gaps = 5/266 (2%)
Strand=Plus/Minus
Query 101833 AACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGGTTG 101892
|| || |||||||| ||||| | ||| |||||||| || ||| |||| | || |||||
Sbjct 50082 AATTCAGGATCTTCCGCTGCACAGATTTCTTGGGAAACGAAGCCATAGGTGCGTAGGTTC 50023
Query 101893 AGAGCAAGACCAATAATACCGATGGAACTTG--TCCACAGACCCATAACAGGAACAAAGA 101950
| ||| ||||| | ||| ||| || |||| | ||| | || | |||||
Sbjct 50022 AAAGCCAGACCGAC--TACTCTAGGAGCTCTCATCCATAAACCGGTTACTAGTACAAATT 49965
Query 101951 GCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAGA 102010
|||||| ||||| ||||| | ||||| ||| || ||||||||||| ||||| |
Sbjct 49964 ACATAAAAAAATGTAACCAACATTTATTGGAAAAAAAAACCCCAAAGATTTGGGACCA-A 49906
Query 102011 AACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTGA 102070
| ||||| || || |||||||||||||| ||| | |||| || | || || || |
Sbjct 49905 AGCGGTTAGCGGTGACCATTGAATAAGTTTCTCCAACTTGGGTTGGATTAAACGCACAAA 49846
Query 102071 AAGTGTTTGCTTGATCACCATCTTCA 102096
| || || || |||||||||||||
Sbjct 49845 ATGTATTAGCACAATCACCATCTTCA 49820
>seq587
Length=401750
Score = 100 bits (110), Expect = 4e-16
Identities = 121/165 (73%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 103171 AGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAG 103230
|||||| ||||| | ||| ||||| |||| ||| | || ||||| ||||||||||| ||
Sbjct 44570 AGCAGCTAGGTCCATGGGAAAGTTATGAGTATTATGTTCATGCATAACTTCCATACCAAG 44511
Query 103231 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGAT 103290
| | | || | || || || | || || | |||||||| |||| ||||| |
Sbjct 44510 GTTACCATGATTAATAATATCAGCTTAAGTATTAATTACACGACCTTGACTATCAACTAC 44451
Query 103291 GGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCT 103335
|| |||||||| ||||| || || |||||||| ||||| |||||
Sbjct 44450 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCT 44406
>seq124
Length=378598
Score = 89.7 bits (98), Expect = 7e-13
Identities = 139/197 (71%), Gaps = 4/197 (2%)
Strand=Plus/Minus
Query 102814 ATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCT--AGTTGATCGTCA 102871
|||||||||||| |||| ||||| ||||| ||| |||| ||||| | ||| ||||||
Sbjct 235861 ATCCGAAGTTGGATATGAAACGCATGTCAGCACATAACC--CTTCTCCATTTGGTCGTCA 235804
Query 102872 TCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTA 102931
|| || || || || |||||| || || ||| | ||||| || || || ||
Sbjct 235803 TCAAGGAATGACCCGTCAGATTGATCCACTGTTCCCTCAACGATCTTCCCCGCGCATGTT 235744
Query 102932 GAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCT 102991
|| || || ||||| | || || || ||||| || | ||||| | ||||| |||||
Sbjct 235743 GAGCAAGCCCCAGCCCTGCACGAGTATGGCAGGTCCATCCCTGCATTCTCAGCTGCGTCA 235684
Query 102992 AGAATATATTGATCATC 103008
|| || | | ||||||
Sbjct 235683 AGGATGAACTCATCATC 235667
>seq5090
Length=30266
Score = 82.4 bits (90), Expect = 1e-10
Identities = 98/134 (73%), Gaps = 7/134 (5%)
Strand=Plus/Minus
Query 103687 AGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGC 103746
||||||| |||| || || |||||||||| || |||| |||||| || |||
Sbjct 13123 AGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATAGATCAAGAAAACGGCG----- 13069
Query 103747 AGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGA 103806
| ||||||||||| || ||||| ||| |||||| ||| |||| |||| |||| |
Sbjct 13068 --CTGCAACAGGAGCTGAATATGCAACAGTGATCCAAGGGTGCATACCCAAACGGAAACT 13011
Query 103807 CAATTCCCACTCAC 103820
| |||||||||||
Sbjct 13010 AAGTTCCCACTCAC 12997
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633293699510520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |