Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq752 356 3e-93 seq1263 302 6e-77 seq37 114 2e-20 seq587 100 4e-16 seq124 89.7 7e-13 seq5090 82.4 1e-10 >seq752 Length=193215 Score = 356 bits (394), Expect = 3e-93 Identities = 491/680 (72%), Gaps = 10/680 (1%) Strand=Plus/Plus Query 101982 AAATGCAATACCAAAGATTTGAGACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTC 102041 ||| |||| ||||||||||| ||||| || ||||| || || |||||||||||||| || Sbjct 188938 AAAAGCAACCCCAAAGATTTGGGACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTC 188997 Query 102042 TTCCTCTTGTGTGGAATCGAATGCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAG 102101 ||| |||| || | | || || ||| || ||||| ||||||||||||| | | Sbjct 188998 TTCAGCTTGGGTTGGGTTAAACGCACGGAATGTATTTGCACCATCACCATCTTCAAATAA 189057 Query 102102 AGTGTTCTCCACAGTGACACCGTGGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGC 102161 ||| || || ||||| |||| ||||| || | ||||| || | |||| | ||| || Sbjct 189058 AGTATTTTCTACAGTAGCACCATGGATAGCGCATAGCAGAGCCGCGCCCAATACACCGGC 189117 Query 102162 AACACCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAG 102221 ||| ||||||||||| |||||||| | ||||| ||||| || || || | || || | Sbjct 189118 AACTCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTGGAAAAAAAGGAT 189177 Query 102222 GAATCTAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAG 102281 ||||| |||||| || || |||||||| ||||||||||||||||| ||||| || || Sbjct 189178 GAATCGAAATATAGCCGCTACACCAAAACTGGGCGCAAAGAACCAACCAGACTGACCTAG 189237 Query 102282 AGGATAGATGAGAAACACACTGACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATT 102341 ||||| || || || ||| ||||||||||| || || ||||||| || || ||||| Sbjct 189238 TGGATAAATCAGGAATACAGAAACAAAAACAGCAATTGGAGCAGAGAATGCGATTGCATT 189297 Query 102342 GTACGGACGAATTCCAATTAACCTAGCCAACTCGAATTGACGAAGCATGAAACCAATGAG 102401 || || || | | || ||| ||| | || | |||||| | ||| ||||| || || Sbjct 189298 ATAAGGTCGCAATTGAACAGACCGAGCAAGTTCAATTTGACGTAACATAAAACCTATTAG 189357 Query 102402 GGCAAATGCACCGTGGAGAGCCACAAAAGCCCAGAGTCC-CCCAAGTTGGACCCACCTGA 102460 | || | ||||||||||| ||||| | ||| || || ||||| | | ||| || | Sbjct 189358 TCCGAAAGTGCCGTGGAGAGCAACAAACGTCCACAGACCGCCCAATTGGCACCAACGAGT 189417 Query 102461 CGAAATCTCCTTGAGCTTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGAGTCAG 102520 | ||||||||||| ||||||||||| || |||| | | ||||| | | | | | Sbjct 189418 C-AAATCTCCTTGGGCTTCAGGACCTCATAGTAACAACAACGAATGTGCTAAACTATTGG 189476 Query 102521 CAGGCGTTGACACAGCAGCTGTAAGGAAATTAGCA-CCTTC---AAGGTAACTAGACGCA 102576 |||| || || || || || || | |||||| ||| ||||| | | ||||| || Sbjct 189477 CAGGAGTCGAAACTGCGGCGGTTAAGAAATT-GCATCCTTCCAAATAGGAACTA---GCC 189532 Query 102577 AGCCCGTGGGTATACCAGGAAGTAGCAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCG 102636 | || || |||||||| ||||| |||| || || || |||| ||||||||| | ||| Sbjct 189533 AATCCATGAGTATACCATGAAGTTACAAAGGTTGTACCTGTAAACCAGCCCCCTAAAGCG 189592 Query 102637 AGATAAGCAGTGGGAAAAAG 102656 | ||| ||| ||||| || Sbjct 189593 AAATAGGCACAAGGAAAGAG 189612 >seq1263 Length=120960 Score = 302 bits (334), Expect = 6e-77 Identities = 417/580 (72%), Gaps = 8/580 (1%) Strand=Plus/Minus Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| ||||||||||||| | | ||| || || ||| | |||| ||||| Sbjct 55381 AATGTATTTGCAGCATCACCATCTTCAAATAAAGTATTTTCTACAATAGCACCATGGATA 55322 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | ||||| || | |||| | ||| ||||| ||||||||||| |||||||| | Sbjct 55321 GCGCATAGCAGAGCCGCGCCCAATACACCGGCAACTCCCATCATATGAAATGGGTTCAAT 55262 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||| ||||| || || || | || || | ||||| |||||| || || |||||||| Sbjct 55261 GTCCAATTATGAAACCCTTGGAAAAAAAGGATGAATCGAAATATAGCCGCTACACCAAAA 55202 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 ||||||||||||||||| ||||| || || ||||| || || || ||| |||||| Sbjct 55201 CTGGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATCAGGAATACAGAAACAAAA 55142 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 ||||| || || ||||||| || || ||||| || || || | | || ||| ||| Sbjct 55141 ACAGCAATTGGAGCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAACAGACCGAGCA 55082 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | || |||||||| | ||| ||||| || || | || || ||||||||||| ||||| Sbjct 55081 AGTTCAAATTGACGTAACATAAAACCTATTAGTCCGAAAGCGCCGTGGAGAGCAACAAAC 55022 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489 | ||| || || || | |||| ||| | ||||||||||| |||||||||||||| Sbjct 55021 GTCCACAGACCGCCCAATTGGCACCAACGAGTNAAATCTCCTTGGGCTTCAGGACCCCAT 54962 Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549 |||| | | ||||| | | | | ||||| || || || || || || | |||| Sbjct 54961 AGTAACAACAACGAATGTGCTAAACTATTGGCAGGAGTCGAAACTGCGGCGGTTAAGAAA 54902 Query 102550 TTAGCA-CCTTC---AAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAA 102605 || ||| ||||| | | ||||| || | || || |||||||| ||||| |||| Sbjct 54901 TT-GCATCCTTCCAAATAGGAACTA---GCCAATCCATGAGTATACCATGAAGTTACAAA 54846 Query 102606 CGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCA 102645 || || || |||| ||||||||| | |||| ||| ||| Sbjct 54845 GGTTGTACCTGTAAACCAGCCCCCTAAAGCGAAATAGGCA 54806 >seq37 Length=530226 Score = 114 bits (126), Expect = 2e-20 Identities = 187/266 (70%), Gaps = 5/266 (2%) Strand=Plus/Minus Query 101833 AACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGGTTG 101892 || || |||||||| ||||| | ||| |||||||| || ||| |||| | || ||||| Sbjct 50082 AATTCAGGATCTTCCGCTGCACAGATTTCTTGGGAAACGAAGCCATAGGTGCGTAGGTTC 50023 Query 101893 AGAGCAAGACCAATAATACCGATGGAACTTG--TCCACAGACCCATAACAGGAACAAAGA 101950 | ||| ||||| | ||| ||| || |||| | ||| | || | ||||| Sbjct 50022 AAAGCCAGACCGAC--TACTCTAGGAGCTCTCATCCATAAACCGGTTACTAGTACAAATT 49965 Query 101951 GCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAGA 102010 |||||| ||||| ||||| | ||||| ||| || ||||||||||| ||||| | Sbjct 49964 ACATAAAAAAATGTAACCAACATTTATTGGAAAAAAAAACCCCAAAGATTTGGGACCA-A 49906 Query 102011 AACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTGA 102070 | ||||| || || |||||||||||||| ||| | |||| || | || || || | Sbjct 49905 AGCGGTTAGCGGTGACCATTGAATAAGTTTCTCCAACTTGGGTTGGATTAAACGCACAAA 49846 Query 102071 AAGTGTTTGCTTGATCACCATCTTCA 102096 | || || || ||||||||||||| Sbjct 49845 ATGTATTAGCACAATCACCATCTTCA 49820 >seq587 Length=401750 Score = 100 bits (110), Expect = 4e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 103171 AGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAG 103230 |||||| ||||| | ||| ||||| |||| ||| | || ||||| ||||||||||| || Sbjct 44570 AGCAGCTAGGTCCATGGGAAAGTTATGAGTATTATGTTCATGCATAACTTCCATACCAAG 44511 Query 103231 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGAT 103290 | | | || | || || || | || || | |||||||| |||| ||||| | Sbjct 44510 GTTACCATGATTAATAATATCAGCTTAAGTATTAATTACACGACCTTGACTATCAACTAC 44451 Query 103291 GGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCT 103335 || |||||||| ||||| || || |||||||| ||||| ||||| Sbjct 44450 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCT 44406 >seq124 Length=378598 Score = 89.7 bits (98), Expect = 7e-13 Identities = 139/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 102814 ATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCT--AGTTGATCGTCA 102871 |||||||||||| |||| ||||| ||||| ||| |||| ||||| | ||| |||||| Sbjct 235861 ATCCGAAGTTGGATATGAAACGCATGTCAGCACATAACC--CTTCTCCATTTGGTCGTCA 235804 Query 102872 TCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTA 102931 || || || || || |||||| || || ||| | ||||| || || || || Sbjct 235803 TCAAGGAATGACCCGTCAGATTGATCCACTGTTCCCTCAACGATCTTCCCCGCGCATGTT 235744 Query 102932 GAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCT 102991 || || || ||||| | || || || ||||| || | ||||| | ||||| ||||| Sbjct 235743 GAGCAAGCCCCAGCCCTGCACGAGTATGGCAGGTCCATCCCTGCATTCTCAGCTGCGTCA 235684 Query 102992 AGAATATATTGATCATC 103008 || || | | |||||| Sbjct 235683 AGGATGAACTCATCATC 235667 >seq5090 Length=30266 Score = 82.4 bits (90), Expect = 1e-10 Identities = 98/134 (73%), Gaps = 7/134 (5%) Strand=Plus/Minus Query 103687 AGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGC 103746 ||||||| |||| || || |||||||||| || |||| |||||| || ||| Sbjct 13123 AGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATAGATCAAGAAAACGGCG----- 13069 Query 103747 AGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGA 103806 | ||||||||||| || ||||| ||| |||||| ||| |||| |||| |||| | Sbjct 13068 --CTGCAACAGGAGCTGAATATGCAACAGTGATCCAAGGGTGCATACCCAAACGGAAACT 13011 Query 103807 CAATTCCCACTCAC 103820 | ||||||||||| Sbjct 13010 AAGTTCCCACTCAC 12997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633293699510520