Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_020845.1
Length=180977
Score E
Sequences producing significant alignments: (Bits) Value
seq1263 210 3e-49
seq752 203 4e-47
seq2510 89.7 6e-13
seq2481 87.8 2e-12
>seq1263
Length=120960
Score = 210 bits (232), Expect = 3e-49
Identities = 385/563 (68%), Gaps = 10/563 (2%)
Strand=Plus/Minus
Query 123272 TCTTCATACAATGTGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCT 123331
|||||| | || || || | || | |||||||| || || ||||| | || | ||
Sbjct 55360 TCTTCAAATAAAGTATTTTCTACAATAGCACCATGGATAGCGCATAGCAGAGCCGCGCCC 55301
Query 123332 AGTATTCCTGCAACACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGT 123391
| || || ||||| |||||||| |||||||| |||||||| || || || |||||
Sbjct 55300 AATACACCGGCAACTCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTGG 55241
Query 123392 ATGAATAAGATATAACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTG 123451
| || | ||| | ||||| || || || ||||| || || || ||||||||||
Sbjct 55240 AAAAAAAGGATGAATCGAAATATAGCCGCTACACCAAAACTGGGCGCAAAGAACCAACCA 55181
Query 123452 TGCTGACCTAGTGGATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAAT 123511
||||||||||||||| ||||| || | | || || || || ||||||||||
Sbjct 55180 GACTGACCTAGTGGATAAATCAGGAATACAGAAACAAAAACAGCAATTGGAGCAGAGAAT 55121
Query 123512 GCGAGTGCGTTGTAAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATG 123571
|||| ||| || ||||||| | ||| | || | |||||||| | | |||
Sbjct 55120 GCGATTGCATTATAAGGTCGCAATTGAACAGACCGAGCAAGTTCAAATTGACGTAACATA 55061
Query 123572 AAACCTATGAGTCCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGT 123631
|||||||| ||||| || | || || | || ||||| |||| ||||| || | |||
Sbjct 55060 AAACCTATTAGTCCGAAAGCGCCGTGGAGAGCAACAAACGTCCACAGACCGCCCAATTGG 55001
Query 123632 AACCAACGAACGAATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGA--GACTATG-- 123687
|||||||| || |||||| |||||||| ||||| || |||| | || | ||
Sbjct 55000 CACCAACGAGTNAAATCTCCTTGGGCTTCAGGACCCCATAGTAACAACAACGAATGTGCT 54941
Query 123688 -ACCCATTGCGTCACCAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGAT 123746
| | |||| |||| || || ||||| || |||||||| || ||| || | ||
Sbjct 54940 AAACTATTG-----GCAGGAGTCGAAACTGCGGCGGTTAAGAAATTGCATCCTTCCAAAT 54886
Query 123747 ATGAAGATGCAATACCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAAC 123806
| ||| || | ||||| ||||||||||| || || ||||| || ||| ||||| |
Sbjct 54885 AGGAACTAGCCAATCCATGAGTATACCATGAAGTTACAAAGGTTGTACCTGTAAACCAGC 54826
Query 123807 CACCGATTGATAGATACGCACAA 123829
| || | | | ||| ||||||
Sbjct 54825 CCCCTAAAGCGAAATAGGCACAA 54803
>seq752
Length=193215
Score = 203 bits (224), Expect = 4e-47
Identities = 385/565 (68%), Gaps = 10/565 (2%)
Strand=Plus/Plus
Query 123272 TCTTCATACAATGTGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCT 123331
|||||| | || || || | || || |||||||| || || ||||| | || | ||
Sbjct 189047 TCTTCAAATAAAGTATTTTCTACAGTAGCACCATGGATAGCGCATAGCAGAGCCGCGCCC 189106
Query 123332 AGTATTCCTGCAACACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGT 123391
| || || ||||| |||||||| |||||||| |||||||| || || || |||||
Sbjct 189107 AATACACCGGCAACTCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTGG 189166
Query 123392 ATGAATAAGATATAACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTG 123451
| || | ||| | ||||| || || || ||||| || || || ||||||||||
Sbjct 189167 AAAAAAAGGATGAATCGAAATATAGCCGCTACACCAAAACTGGGCGCAAAGAACCAACCA 189226
Query 123452 TGCTGACCTAGTGGATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAAT 123511
||||||||||||||| ||||| || | | || || || || ||||||||||
Sbjct 189227 GACTGACCTAGTGGATAAATCAGGAATACAGAAACAAAAACAGCAATTGGAGCAGAGAAT 189286
Query 123512 GCGAGTGCGTTGTAAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATG 123571
|||| ||| || ||||||| | ||| | || | |||| ||| | | |||
Sbjct 189287 GCGATTGCATTATAAGGTCGCAATTGAACAGACCGAGCAAGTTCAATTTGACGTAACATA 189346
Query 123572 AAACCTATGAGTCCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGT 123631
|||||||| ||||| || || || | || ||||| |||| ||||| || | |||
Sbjct 189347 AAACCTATTAGTCCGAAAGTGCCGTGGAGAGCAACAAACGTCCACAGACCGCCCAATTGG 189406
Query 123632 AACCAACGAACGAATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGA--GACTATG-- 123687
|||||||| || |||||| |||||||| || || || |||| | || | ||
Sbjct 189407 CACCAACGAGTCAAATCTCCTTGGGCTTCAGGACCTCATAGTAACAACAACGAATGTGCT 189466
Query 123688 -ACCCATTGCGTCACCAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGAT 123746
| | |||| |||| || || ||||| || |||||||| || ||| || | ||
Sbjct 189467 AAACTATTG-----GCAGGAGTCGAAACTGCGGCGGTTAAGAAATTGCATCCTTCCAAAT 189521
Query 123747 ATGAAGATGCAATACCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAAC 123806
| ||| || | ||||| ||||||||||| || || ||||| || ||| ||||| |
Sbjct 189522 AGGAACTAGCCAATCCATGAGTATACCATGAAGTTACAAAGGTTGTACCTGTAAACCAGC 189581
Query 123807 CACCGATTGATAGATACGCACAAGG 123831
| || | | | ||| ||||||||
Sbjct 189582 CCCCTAAAGCGAAATAGGCACAAGG 189606
>seq2510
Length=74850
Score = 89.7 bits (98), Expect = 6e-13
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 122885 GGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTGGTCAACAGATGACATCCAT 122944
|||| || || || ||||||| || || ||||| || || || || | ||||||
Sbjct 56822 GGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCTTGAGCCGCCATCCAA 56881
Query 122945 GCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAAAGTCTCGAACTCTGGGTCT 123004
|| | || ||||| || | |||||| || || || ||||||||||| || || || |||
Sbjct 56882 GCACGAATACCTTCGTTTAAAAGAATATTTTTGGTGTAGAAAGTCTCAAATTCAGGATCT 56941
Query 123005 TCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCTGAGGTTAAGTGCTAGACCT 123064
|| ||||| | || || || || | ||||| || || | ||||| || || |||||
Sbjct 56942 TCCGCTGCACGGATTTCCTGGGAAATGAAGTCATAGGCGCGTAGGTTCAGAGCCAGACCG 57001
Query 123065 AC 123066
||
Sbjct 57002 AC 57003
>seq2481
Length=71469
Score = 87.8 bits (96), Expect = 2e-12
Identities = 77/96 (80%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 138495 ACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATTAGTTCCATGTGCTGAC 138554
||| | |||| ||||||||| |||| | ||||| |||||||||||||||||||||||
Sbjct 24282 ACAGCAACAATTTTCATTCCACACATGGCAGCACTGGCAGGATTAGTTCCATGTGCTGAG 24341
Query 138555 TCTGGTATCAGACATACATTTCTTTTATCATCTCCT 138590
||||||| | ||||||||| | | || ||||||
Sbjct 24342 ACTGGTATGATACATACATTCCGATGATGGTCTCCT 24377
Score = 86.0 bits (94), Expect = 7e-12
Identities = 71/87 (82%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242
|| ||||||||||| | |||||||| ||||||||||| || || |||||||| |||||
Sbjct 23276 ACTCCAATAGGACCCATTCCAGGACCACCACCTCCATGAGGTATGCAGAATGTTTTATGG 23335
Query 138243 AAATTTAGATGACATACATCTGCACCA 138269
| ||| ||||| || ||||| || |||
Sbjct 23336 AGATTCAGATGGCAAACATCAGCCCCA 23362
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578797422417880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |