Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1263 210 3e-49 seq752 203 4e-47 seq2510 89.7 6e-13 seq2481 87.8 2e-12 >seq1263 Length=120960 Score = 210 bits (232), Expect = 3e-49 Identities = 385/563 (68%), Gaps = 10/563 (2%) Strand=Plus/Minus Query 123272 TCTTCATACAATGTGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCT 123331 |||||| | || || || | || | |||||||| || || ||||| | || | || Sbjct 55360 TCTTCAAATAAAGTATTTTCTACAATAGCACCATGGATAGCGCATAGCAGAGCCGCGCCC 55301 Query 123332 AGTATTCCTGCAACACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGT 123391 | || || ||||| |||||||| |||||||| |||||||| || || || ||||| Sbjct 55300 AATACACCGGCAACTCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTGG 55241 Query 123392 ATGAATAAGATATAACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTG 123451 | || | ||| | ||||| || || || ||||| || || || |||||||||| Sbjct 55240 AAAAAAAGGATGAATCGAAATATAGCCGCTACACCAAAACTGGGCGCAAAGAACCAACCA 55181 Query 123452 TGCTGACCTAGTGGATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAAT 123511 ||||||||||||||| ||||| || | | || || || || |||||||||| Sbjct 55180 GACTGACCTAGTGGATAAATCAGGAATACAGAAACAAAAACAGCAATTGGAGCAGAGAAT 55121 Query 123512 GCGAGTGCGTTGTAAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATG 123571 |||| ||| || ||||||| | ||| | || | |||||||| | | ||| Sbjct 55120 GCGATTGCATTATAAGGTCGCAATTGAACAGACCGAGCAAGTTCAAATTGACGTAACATA 55061 Query 123572 AAACCTATGAGTCCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGT 123631 |||||||| ||||| || | || || | || ||||| |||| ||||| || | ||| Sbjct 55060 AAACCTATTAGTCCGAAAGCGCCGTGGAGAGCAACAAACGTCCACAGACCGCCCAATTGG 55001 Query 123632 AACCAACGAACGAATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGA--GACTATG-- 123687 |||||||| || |||||| |||||||| ||||| || |||| | || | || Sbjct 55000 CACCAACGAGTNAAATCTCCTTGGGCTTCAGGACCCCATAGTAACAACAACGAATGTGCT 54941 Query 123688 -ACCCATTGCGTCACCAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGAT 123746 | | |||| |||| || || ||||| || |||||||| || ||| || | || Sbjct 54940 AAACTATTG-----GCAGGAGTCGAAACTGCGGCGGTTAAGAAATTGCATCCTTCCAAAT 54886 Query 123747 ATGAAGATGCAATACCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAAC 123806 | ||| || | ||||| ||||||||||| || || ||||| || ||| ||||| | Sbjct 54885 AGGAACTAGCCAATCCATGAGTATACCATGAAGTTACAAAGGTTGTACCTGTAAACCAGC 54826 Query 123807 CACCGATTGATAGATACGCACAA 123829 | || | | | ||| |||||| Sbjct 54825 CCCCTAAAGCGAAATAGGCACAA 54803 >seq752 Length=193215 Score = 203 bits (224), Expect = 4e-47 Identities = 385/565 (68%), Gaps = 10/565 (2%) Strand=Plus/Plus Query 123272 TCTTCATACAATGTGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCT 123331 |||||| | || || || | || || |||||||| || || ||||| | || | || Sbjct 189047 TCTTCAAATAAAGTATTTTCTACAGTAGCACCATGGATAGCGCATAGCAGAGCCGCGCCC 189106 Query 123332 AGTATTCCTGCAACACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGT 123391 | || || ||||| |||||||| |||||||| |||||||| || || || ||||| Sbjct 189107 AATACACCGGCAACTCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTGG 189166 Query 123392 ATGAATAAGATATAACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTG 123451 | || | ||| | ||||| || || || ||||| || || || |||||||||| Sbjct 189167 AAAAAAAGGATGAATCGAAATATAGCCGCTACACCAAAACTGGGCGCAAAGAACCAACCA 189226 Query 123452 TGCTGACCTAGTGGATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAAT 123511 ||||||||||||||| ||||| || | | || || || || |||||||||| Sbjct 189227 GACTGACCTAGTGGATAAATCAGGAATACAGAAACAAAAACAGCAATTGGAGCAGAGAAT 189286 Query 123512 GCGAGTGCGTTGTAAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATG 123571 |||| ||| || ||||||| | ||| | || | |||| ||| | | ||| Sbjct 189287 GCGATTGCATTATAAGGTCGCAATTGAACAGACCGAGCAAGTTCAATTTGACGTAACATA 189346 Query 123572 AAACCTATGAGTCCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGT 123631 |||||||| ||||| || || || | || ||||| |||| ||||| || | ||| Sbjct 189347 AAACCTATTAGTCCGAAAGTGCCGTGGAGAGCAACAAACGTCCACAGACCGCCCAATTGG 189406 Query 123632 AACCAACGAACGAATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGA--GACTATG-- 123687 |||||||| || |||||| |||||||| || || || |||| | || | || Sbjct 189407 CACCAACGAGTCAAATCTCCTTGGGCTTCAGGACCTCATAGTAACAACAACGAATGTGCT 189466 Query 123688 -ACCCATTGCGTCACCAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGAT 123746 | | |||| |||| || || ||||| || |||||||| || ||| || | || Sbjct 189467 AAACTATTG-----GCAGGAGTCGAAACTGCGGCGGTTAAGAAATTGCATCCTTCCAAAT 189521 Query 123747 ATGAAGATGCAATACCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAAC 123806 | ||| || | ||||| ||||||||||| || || ||||| || ||| ||||| | Sbjct 189522 AGGAACTAGCCAATCCATGAGTATACCATGAAGTTACAAAGGTTGTACCTGTAAACCAGC 189581 Query 123807 CACCGATTGATAGATACGCACAAGG 123831 | || | | | ||| |||||||| Sbjct 189582 CCCCTAAAGCGAAATAGGCACAAGG 189606 >seq2510 Length=74850 Score = 89.7 bits (98), Expect = 6e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 122885 GGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTGGTCAACAGATGACATCCAT 122944 |||| || || || ||||||| || || ||||| || || || || | |||||| Sbjct 56822 GGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCTTGAGCCGCCATCCAA 56881 Query 122945 GCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAAAGTCTCGAACTCTGGGTCT 123004 || | || ||||| || | |||||| || || || ||||||||||| || || || ||| Sbjct 56882 GCACGAATACCTTCGTTTAAAAGAATATTTTTGGTGTAGAAAGTCTCAAATTCAGGATCT 56941 Query 123005 TCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCTGAGGTTAAGTGCTAGACCT 123064 || ||||| | || || || || | ||||| || || | ||||| || || ||||| Sbjct 56942 TCCGCTGCACGGATTTCCTGGGAAATGAAGTCATAGGCGCGTAGGTTCAGAGCCAGACCG 57001 Query 123065 AC 123066 || Sbjct 57002 AC 57003 >seq2481 Length=71469 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 138495 ACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATTAGTTCCATGTGCTGAC 138554 ||| | |||| ||||||||| |||| | ||||| ||||||||||||||||||||||| Sbjct 24282 ACAGCAACAATTTTCATTCCACACATGGCAGCACTGGCAGGATTAGTTCCATGTGCTGAG 24341 Query 138555 TCTGGTATCAGACATACATTTCTTTTATCATCTCCT 138590 ||||||| | ||||||||| | | || |||||| Sbjct 24342 ACTGGTATGATACATACATTCCGATGATGGTCTCCT 24377 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || ||||||||||| | |||||||| ||||||||||| || || |||||||| ||||| Sbjct 23276 ACTCCAATAGGACCCATTCCAGGACCACCACCTCCATGAGGTATGCAGAATGTTTTATGG 23335 Query 138243 AAATTTAGATGACATACATCTGCACCA 138269 | ||| ||||| || ||||| || ||| Sbjct 23336 AGATTCAGATGGCAAACATCAGCCCCA 23362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578797422417880