Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq752 365 6e-96 seq1263 331 1e-85 seq124 96.9 5e-15 >seq752 Length=193215 Score = 365 bits (404), Expect = 6e-96 Identities = 485/667 (73%), Gaps = 6/667 (1%) Strand=Plus/Plus Query 23663 AAACGCAACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTC 23722 ||| |||||||| |||||||| |||||||| || || || || ||||| ||||| || || Sbjct 188938 AAAAGCAACCCCAAAGATTTGGGACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTC 188997 Query 23723 CTCCTCCTGAGTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAG 23782 || | || || | | ||||| || || ||||| || ||||||||| | | Sbjct 188998 TTCAGCTTGGGTTGGGTTAAACGCACGGAATGTATTTGCACCATCACCATCTTCAAATAA 189057 Query 23783 TGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGC 23842 ||||| || |||||| | ||||| ||||| | || || || | |||| || ||| || Sbjct 189058 AGTATTTTCTACAGTAGCACCATGGATAGCGCATAGCAGAGCCGCGCCCAATACACCGGC 189117 Query 23843 AACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAG 23902 ||||||||||||||| || ||||| | ||||| |||||||| || |||| || || | Sbjct 189118 AACTCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTGGAAAAAAAGGAT 189177 Query 23903 GAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAA 23962 ||| | || || ||||| ||||| ||||| ||||||||||||||| ||||| || | Sbjct 189178 GAATCGAAATATAGCCGCTACACCAAAACTGGGCGCAAAGAACCAACCAGACTGACCTAG 189237 Query 23963 AGGATAGATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATT 24022 ||||| || ||||||||||| || || |||||||| ||| |||| || || || ||||| Sbjct 189238 TGGATAAATCAGGAATACAGAAACAAAAACAGCAATTGGAGCAGAGAATGCGATTGCATT 189297 Query 24023 GTAGGGACGGATTCCAATTAGA-CGTGCCAGTTCAAACTGACGTAACATAAAACCTATAA 24081 || || || | | || ||| || || ||||||| |||||||||||||||||||| | Sbjct 189298 ATAAGGTCGCAATTGAA-CAGACCGAGCAAGTTCAATTTGACGTAACATAAAACCTATTA 189356 Query 24082 GTGCAAAGGCACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTT 24141 || | || | ||||||||||||||||| | ||| || || || | |||| ||| || Sbjct 189357 GTCCGAAAGTGCCGTGGAGAGCAACAAACGTCCACAGACCGCCCAATTGGCACCAACGAG 189416 Query 24142 GAAAGTCCCCTTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAG 24201 || || ||||| | |||||||| || |||| | | ||||| | | | | | Sbjct 189417 TCAAATCTCCTTGGGCTTCAGGACCTCATAGTAACAACAACGAATGTGCTAAACTATTGG 189476 Query 24202 CAGGCGTCGAGACAGCTGCCG-TAAGAAAGTTAGCA-CCCTCAAGATAGGAACTAGCAAG 24259 |||| ||||| || || || | ||||||| | ||| || || | |||||||||||| | Sbjct 189477 CAGGAGTCGAAACTGCGGCGGTTAAGAAA--TTGCATCCTTCCAAATAGGAACTAGCCAA 189534 Query 24260 TCCATGGGTGTACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAG 24319 |||||| || ||||| || ||||| | ||| || |||| ||| || || | || | Sbjct 189535 TCCATGAGTATACCATGAAGTTACAAAGGTTGTACCTGTAAACCAGCCCCCTAAAGCGAA 189594 Query 24320 ATAAGCA 24326 ||| ||| Sbjct 189595 ATAGGCA 189601 >seq1263 Length=120960 Score = 331 bits (366), Expect = 1e-85 Identities = 425/580 (73%), Gaps = 6/580 (1%) Strand=Plus/Minus Query 23750 AAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAAT 23809 ||| || ||||| || ||||||||| | | ||||| || ||| || | ||||| || Sbjct 55382 AAATGTATTTGCAGCATCACCATCTTCAAATAAAGTATTTTCTACAATAGCACCATGGAT 55323 Query 23810 AGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAG 23869 ||| | || || || | |||| || ||| ||||||||||||||||| || ||||| | Sbjct 55322 AGCGCATAGCAGAGCCGCGCCCAATACACCGGCAACTCCCATCATATGAAATGGGTTCAA 55263 Query 23870 CGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAA 23929 ||||| |||||||| || |||| || || | ||| | || || ||||| ||||| || Sbjct 55262 TGTCCAATTATGAAACCCTTGGAAAAAAAGGATGAATCGAAATATAGCCGCTACACCAAA 55203 Query 23930 ACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACACGAA 23989 ||| ||||||||||||||| ||||| || | ||||| || ||||||||||| || || Sbjct 55202 ACTGGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATCAGGAATACAGAAACAAA 55143 Query 23990 TACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGAC-GTG 24048 |||||||| ||| |||| || || || ||||| || || || | | || |||| | | Sbjct 55142 AACAGCAATTGGAGCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAAC-AGACCGAG 55084 Query 24049 CCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAACAA 24108 | |||||||| |||||||||||||||||||| ||| | || || |||||||||||||||| Sbjct 55083 CAAGTTCAAATTGACGTAACATAAAACCTATTAGTCCGAAAGCGCCGTGGAGAGCAACAA 55024 Query 24109 AGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGACCCC 24168 | | ||| || || || | |||| ||| || || || ||||| | |||||||||| Sbjct 55023 ACGTCCACAGACCGCCCAATTGGCACCAACGAGTNAAATCTCCTTGGGCTTCAGGACCCC 54964 Query 24169 AAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCG-TAAGA 24227 | |||| | | ||||| | | | | ||||| ||||| || || || | ||||| Sbjct 54963 ATAGTAACAACAACGAATGTGCTAAACTATTGGCAGGAGTCGAAACTGCGGCGGTTAAGA 54904 Query 24228 AAGTTAGCA-CCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAACAAA 24286 || | ||| || || | |||||||||||| | |||||| || ||||| || ||||| Sbjct 54903 AA--TTGCATCCTTCCAAATAGGAACTAGCCAATCCATGAGTATACCATGAAGTTACAAA 54846 Query 24287 AGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCA 24326 | ||| || |||| ||| || || | || | ||| ||| Sbjct 54845 GGTTGTACCTGTAAACCAGCCCCCTAAAGCGAAATAGGCA 54806 >seq124 Length=378598 Score = 96.9 bits (106), Expect = 5e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 32647 ATCAGAAGTTGGATATGCAACACAAGTGAGCACA-AACCCTTCTTCAATTTGATCATCAT 32705 ||| ||||||||||||| ||| || || |||||| |||||||| || ||||| || |||| Sbjct 235861 ATCCGAAGTTGGATATGAAACGCATGTCAGCACATAACCCTTC-TCCATTTGGTCGTCAT 235803 Query 32706 CCAAGAACGACTGATCACTTTGGTCTACTGTACCAGATACAATCTTACCTGCACAAGATG 32765 | | ||| ||| ||| ||| || ||||| || || ||||| || || || | || Sbjct 235802 CAAGGAATGACCCGTCAGATTGATCCACTGTTCCCTCAACGATCTTCCCCGCGCATGTTG 235743 Query 32766 AACAGGCACCTGCACGACAAGAGTAGTTTAAATCAACCCCACCTTCCTCTGCTGCATCAA 32825 | || || || || | || ||||| | || | ||| | | ||| ||||| |||| Sbjct 235742 AGCAAGCCCCAGCCCTGCACGAGTATGGCAGGTCCATCCCTGCATTCTCAGCTGCGTCAA 235683 Query 32826 GGATGTATTGATCATCA 32842 ||||| | | ||||||| Sbjct 235682 GGATGAACTCATCATCA 235666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665263398575080