Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_020851.1
Length=208007
Score E
Sequences producing significant alignments: (Bits) Value
seq752 365 6e-96
seq1263 331 1e-85
seq124 96.9 5e-15
>seq752
Length=193215
Score = 365 bits (404), Expect = 6e-96
Identities = 485/667 (73%), Gaps = 6/667 (1%)
Strand=Plus/Plus
Query 23663 AAACGCAACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTC 23722
||| |||||||| |||||||| |||||||| || || || || ||||| ||||| || ||
Sbjct 188938 AAAAGCAACCCCAAAGATTTGGGACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTC 188997
Query 23723 CTCCTCCTGAGTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAG 23782
|| | || || | | ||||| || || ||||| || ||||||||| | |
Sbjct 188998 TTCAGCTTGGGTTGGGTTAAACGCACGGAATGTATTTGCACCATCACCATCTTCAAATAA 189057
Query 23783 TGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGC 23842
||||| || |||||| | ||||| ||||| | || || || | |||| || ||| ||
Sbjct 189058 AGTATTTTCTACAGTAGCACCATGGATAGCGCATAGCAGAGCCGCGCCCAATACACCGGC 189117
Query 23843 AACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAG 23902
||||||||||||||| || ||||| | ||||| |||||||| || |||| || || |
Sbjct 189118 AACTCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTGGAAAAAAAGGAT 189177
Query 23903 GAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAA 23962
||| | || || ||||| ||||| ||||| ||||||||||||||| ||||| || |
Sbjct 189178 GAATCGAAATATAGCCGCTACACCAAAACTGGGCGCAAAGAACCAACCAGACTGACCTAG 189237
Query 23963 AGGATAGATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATT 24022
||||| || ||||||||||| || || |||||||| ||| |||| || || || |||||
Sbjct 189238 TGGATAAATCAGGAATACAGAAACAAAAACAGCAATTGGAGCAGAGAATGCGATTGCATT 189297
Query 24023 GTAGGGACGGATTCCAATTAGA-CGTGCCAGTTCAAACTGACGTAACATAAAACCTATAA 24081
|| || || | | || ||| || || ||||||| |||||||||||||||||||| |
Sbjct 189298 ATAAGGTCGCAATTGAA-CAGACCGAGCAAGTTCAATTTGACGTAACATAAAACCTATTA 189356
Query 24082 GTGCAAAGGCACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTT 24141
|| | || | ||||||||||||||||| | ||| || || || | |||| ||| ||
Sbjct 189357 GTCCGAAAGTGCCGTGGAGAGCAACAAACGTCCACAGACCGCCCAATTGGCACCAACGAG 189416
Query 24142 GAAAGTCCCCTTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAG 24201
|| || ||||| | |||||||| || |||| | | ||||| | | | | |
Sbjct 189417 TCAAATCTCCTTGGGCTTCAGGACCTCATAGTAACAACAACGAATGTGCTAAACTATTGG 189476
Query 24202 CAGGCGTCGAGACAGCTGCCG-TAAGAAAGTTAGCA-CCCTCAAGATAGGAACTAGCAAG 24259
|||| ||||| || || || | ||||||| | ||| || || | |||||||||||| |
Sbjct 189477 CAGGAGTCGAAACTGCGGCGGTTAAGAAA--TTGCATCCTTCCAAATAGGAACTAGCCAA 189534
Query 24260 TCCATGGGTGTACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAG 24319
|||||| || ||||| || ||||| | ||| || |||| ||| || || | || |
Sbjct 189535 TCCATGAGTATACCATGAAGTTACAAAGGTTGTACCTGTAAACCAGCCCCCTAAAGCGAA 189594
Query 24320 ATAAGCA 24326
||| |||
Sbjct 189595 ATAGGCA 189601
>seq1263
Length=120960
Score = 331 bits (366), Expect = 1e-85
Identities = 425/580 (73%), Gaps = 6/580 (1%)
Strand=Plus/Minus
Query 23750 AAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAAT 23809
||| || ||||| || ||||||||| | | ||||| || ||| || | ||||| ||
Sbjct 55382 AAATGTATTTGCAGCATCACCATCTTCAAATAAAGTATTTTCTACAATAGCACCATGGAT 55323
Query 23810 AGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAG 23869
||| | || || || | |||| || ||| ||||||||||||||||| || ||||| |
Sbjct 55322 AGCGCATAGCAGAGCCGCGCCCAATACACCGGCAACTCCCATCATATGAAATGGGTTCAA 55263
Query 23870 CGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAA 23929
||||| |||||||| || |||| || || | ||| | || || ||||| ||||| ||
Sbjct 55262 TGTCCAATTATGAAACCCTTGGAAAAAAAGGATGAATCGAAATATAGCCGCTACACCAAA 55203
Query 23930 ACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACACGAA 23989
||| ||||||||||||||| ||||| || | ||||| || ||||||||||| || ||
Sbjct 55202 ACTGGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATCAGGAATACAGAAACAAA 55143
Query 23990 TACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGAC-GTG 24048
|||||||| ||| |||| || || || ||||| || || || | | || |||| | |
Sbjct 55142 AACAGCAATTGGAGCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAAC-AGACCGAG 55084
Query 24049 CCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAACAA 24108
| |||||||| |||||||||||||||||||| ||| | || || ||||||||||||||||
Sbjct 55083 CAAGTTCAAATTGACGTAACATAAAACCTATTAGTCCGAAAGCGCCGTGGAGAGCAACAA 55024
Query 24109 AGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGACCCC 24168
| | ||| || || || | |||| ||| || || || ||||| | ||||||||||
Sbjct 55023 ACGTCCACAGACCGCCCAATTGGCACCAACGAGTNAAATCTCCTTGGGCTTCAGGACCCC 54964
Query 24169 AAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCG-TAAGA 24227
| |||| | | ||||| | | | | ||||| ||||| || || || | |||||
Sbjct 54963 ATAGTAACAACAACGAATGTGCTAAACTATTGGCAGGAGTCGAAACTGCGGCGGTTAAGA 54904
Query 24228 AAGTTAGCA-CCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAACAAA 24286
|| | ||| || || | |||||||||||| | |||||| || ||||| || |||||
Sbjct 54903 AA--TTGCATCCTTCCAAATAGGAACTAGCCAATCCATGAGTATACCATGAAGTTACAAA 54846
Query 24287 AGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCA 24326
| ||| || |||| ||| || || | || | ||| |||
Sbjct 54845 GGTTGTACCTGTAAACCAGCCCCCTAAAGCGAAATAGGCA 54806
>seq124
Length=378598
Score = 96.9 bits (106), Expect = 5e-15
Identities = 141/197 (72%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 32647 ATCAGAAGTTGGATATGCAACACAAGTGAGCACA-AACCCTTCTTCAATTTGATCATCAT 32705
||| ||||||||||||| ||| || || |||||| |||||||| || ||||| || ||||
Sbjct 235861 ATCCGAAGTTGGATATGAAACGCATGTCAGCACATAACCCTTC-TCCATTTGGTCGTCAT 235803
Query 32706 CCAAGAACGACTGATCACTTTGGTCTACTGTACCAGATACAATCTTACCTGCACAAGATG 32765
| | ||| ||| ||| ||| || ||||| || || ||||| || || || | ||
Sbjct 235802 CAAGGAATGACCCGTCAGATTGATCCACTGTTCCCTCAACGATCTTCCCCGCGCATGTTG 235743
Query 32766 AACAGGCACCTGCACGACAAGAGTAGTTTAAATCAACCCCACCTTCCTCTGCTGCATCAA 32825
| || || || || | || ||||| | || | ||| | | ||| ||||| ||||
Sbjct 235742 AGCAAGCCCCAGCCCTGCACGAGTATGGCAGGTCCATCCCTGCATTCTCAGCTGCGTCAA 235683
Query 32826 GGATGTATTGATCATCA 32842
||||| | | |||||||
Sbjct 235682 GGATGAACTCATCATCA 235666
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 665263398575080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |