Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1535 118 1e-21 seq318 114 2e-20 seq2451 109 7e-19 seq251 98.7 1e-15 >seq1535 Length=214281 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 75187 || |||| ||||| || ||||||||| ||||||||||||| | | ||| |||| | Sbjct 153331 CGTGACTTTGATTATGATTACTTTGGGTTCAAAACCCTTGAAAGGTCCTACCTTCTAAAA 153390 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 || | || | | | |||| || ||| ||||||| ||| |||| || | || || Sbjct 153391 GTCCAAGGGAAAGTTGTTGAAAGGCCTCAGCACATGTTGATGAGGGTTGCTGTTGGAATT 153450 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307 ||| | | || |||||||||||| | |||||||| ||| ||||||||| | |||| Sbjct 153451 CACAAGAATGATATTGATTCTGTCATCCAGACATACCACATGATGTCCCAGAGATGGTTC 153510 Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 | ||| || | ||||| || || ||||| || || ||||| || ||| Sbjct 153511 ACTCATGCTTCTCCAACTCTTTTTAATGCAGGAACGCCAAGGCCTCAG 153558 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 75187 || |||| ||||| || ||||| ||| ||||||| ||||||| | || ||| | Sbjct 168484 CGTGACTTTGATTATGATTACTCTGGGTTCAAAACACTTGAGAGGTCCTCCGTTCTAAAA 168543 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 || | || | | | |||| || ||| ||||||| ||| |||| || | || || Sbjct 168544 GTCCAAGGGAAAGTTGTTGAAAGGCCTCAGCACATGTTGATGAGGGTTGCTGTTGGAATT 168603 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307 ||| | | || |||||||||||| | |||||||| ||| ||||||||| | |||| Sbjct 168604 CACAAGAATGATATTGATTCTGTCATCCAGACATACCACATGATGTCCCAGAGATGGTTC 168663 Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 | || || | || || ||||| ||| | || |||||||| || ||| Sbjct 168664 ACACATGCTTCTCCGACTCTCTTGAATCCAGGAACACCAAGGCCTCAG 168711 >seq318 Length=266665 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 |||||||||||| || | ||||| || || || ||||| || |||||||||||| || Sbjct 56041 CTTCGCCGAGCGGCTGATCGCGTTCGCTTGCGTCGAGGGGATTTTCTTCTCCGGGAGTTT 55982 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| |||||||||| || || ||||| || || |||||| || || Sbjct 55981 CTGCGCGATATTCTGGCTGAAGAAGCGCGGGCTAATGCCGGGACTGACCTTCTCGAACGA 55922 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 | | || || ||||| |||||||| ||| Sbjct 55921 ATTGATCTCGCGAGACGAGGGTCTACAC 55894 >seq2451 Length=68748 Score = 109 bits (120), Expect = 7e-19 Identities = 159/223 (71%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || || || || | ||||||||||| | ||||| | || ||| | ||| Sbjct 67931 GCCATCGACACGGTGCCCTGCGTGAAGAAGAAGGCGGATTGGGCTCTCAAGTGGATCGAC 67990 Query 65056 ACAAAGTCTCGCTC-CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114 || || |||||||||||| || | ||||| | || || |||| || || Sbjct 67991 G----GTGCCGAGAGCTTCGCCGAGCGGCTGATAGCGTTCGTTTGCGTCAAGGGGATTTT 68046 Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 |||||||||| |||| ||| || | ||| |||||||||| || || ||||| || || Sbjct 68047 CTTCTCCGGGAGTTTCTACGCGATATTCTGGCTGAAGAAGCGCGGGCTAATGCCGGGACT 68106 Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 |||||| |||||| | || || ||||| |||||||| ||| Sbjct 68107 CACCTTCTCGAATGAATTGATCTCGCGAGACGAGGGTCTACAC 68149 >seq251 Length=297614 Score = 98.7 bits (108), Expect = 1e-15 Identities = 210/314 (67%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || |||||||| || || || ||| || || |||||| | ||| || || Sbjct 249533 CCTGGCACAGGAAAGACTCTTCTAGCTAAAGCAATTGCAGGTGAAGCTGGTGTGCCTTTT 249592 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | | | ||||| |||||||||||||| || |||||| | || Sbjct 249593 TTCTCCATCTCAGGTTCTGAATTTGTTGAGATGTTTGTTGGAGTTGGTGCCTCTCGAGTC 249652 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || ||||| || | | ||| || ||| || || ||||| || | ||||| ||| Sbjct 249653 CGTGATCTTTTCAAGAAGGCCAAGGAGAATGCTCCCTGCATTGTATTTGTGGATGAAATT 249712 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAA 175554 ||||| || || | ||| | | ||||| | || |||||| || ||||| || Sbjct 249713 GATGCCGTTGGAAGGCAGAGAGGAACTGGTATTGGTGGAGGAAATGATGAAAGAGAGCAG 249772 Query 175555 ACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTT 175614 || |||| || || | || || |||||||||||||| | | ||||| || | || Sbjct 249773 ACTCTTAACCAGCTTTTGACAGAAATGGATGGCTTTGAGGGTAACACTGGTATCATTGTC 249832 Query 175615 ATTGCGGCCACTAA 175628 |||||||| ||||| Sbjct 249833 ATTGCGGCAACTAA 249846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596362523234720