Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_020859.1
Length=175430
Score E
Sequences producing significant alignments: (Bits) Value
seq752 306 4e-78
seq1263 271 9e-68
seq2510 136 4e-27
seq587 114 1e-20
seq37 98.7 1e-15
>seq752
Length=193215
Score = 306 bits (338), Expect = 4e-78
Identities = 480/679 (71%), Gaps = 10/679 (1%)
Strand=Plus/Minus
Query 167080 CTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGTCACG 167139
|| ||||| ||| ||| | ||| | || || ||| |||| || || || || || ||
Sbjct 189612 CTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACT 189553
Query 167140 AGTTGGTATACTCATGGACTCGC--GTCCAGTTATCTTGAGGG-TGCGAACTTTCTTA-C 167195
||||||||||||||| | || || | ||| | || || ||| | ||||||| |
Sbjct 189552 TCATGGTATACTCATGGATTGGCTAGTTCC--TATTTGGAAGGATGCAA--TTTCTTAAC 189497
Query 167196 TGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGGGGTCC 167255
|| |||||| ||||| || || | | | ||||| || | | ||||| |||||
Sbjct 189496 CGCCGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCC 189437
Query 167256 TGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTTGTGGC 167315
|||| | ||||| ||||| | ||| |||| | || || || ||| | ||||| ||
Sbjct 189436 TGAAGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGC 189377
Query 167316 GCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGC-C 167374
|||||||| | || | || || ||||| ||| | || || ||||||||||||| |
Sbjct 189376 TCTCCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTC 189317
Query 167375 TGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTA 167434
|| | | | || || || ||||| || || ||||||| ||| |||||||| || |||
Sbjct 189316 TGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTT 189258
Query 167435 GCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAG 167494
|| ||||| | ||||| || ||||| | ||||||||||| || || || |
Sbjct 189257 CTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTG 189198
Query 167495 TCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATC 167554
| || || || || |||||| |||| || ||||||| || || || |||||| |||| |
Sbjct 189197 TAGCGGCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACC 189138
Query 167555 CATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATG 167614
|||||||||||||||| || || ||| | |||| | || |||| | || |||||||
Sbjct 189137 CATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATG 189078
Query 167615 GTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAGGCAT 167674
||| ||| ||||| |||||||| | |||||||||||| ||||| || || || |
Sbjct 189077 GTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGT 189018
Query 167675 TCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTC 167734
| | | || || | ||||| |||||||||||||| || || ||||| || ||||| |
Sbjct 189017 TTAACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCC 188958
Query 167735 AGATCTTCGGCATTGCTTT 167753
| ||||| || |||||||
Sbjct 188957 AAATCTTTGGGGTTGCTTT 188939
>seq1263
Length=120960
Score = 271 bits (300), Expect = 9e-68
Identities = 414/582 (71%), Gaps = 10/582 (2%)
Strand=Plus/Plus
Query 167091 TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATAC 167150
||| ||| | ||| | || || ||| |||| || || || || || || ||||||||
Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865
Query 167151 TCATGGACTCGC--GTCCAGTTATCTTGAGGG-TGCGAACTTTCTTA-CTGCGGCAGTTA 167206
||||||| | || || | ||| | || || ||| | ||||||| | || ||||||
Sbjct 54866 TCATGGATTGGCTAGTTCC--TATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTT 54921
Query 167207 GTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGGGGTCCTGAATCTCAAG 167266
||||| || || | | | ||||| || | | ||||||||||||||| | ||||
Sbjct 54922 CGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAG 54981
Query 167267 GGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAG 167326
| ||||| | ||| |||| | || || || ||| | ||||| || |||||||| |
Sbjct 54982 GAGATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCG 55041
Query 167327 CCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGC-CTGATTGGTATC 167385
| || | || || ||||| ||| | || || |||||||||||||| ||| | | |
Sbjct 55042 CTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TG 55100
Query 167386 CGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTTCCTT 167445
|| || || ||||| || || ||||||| ||| |||||||| || ||| || |||||
Sbjct 55101 CGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTG 55160
Query 167446 CTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGCCATC 167505
| ||||| || ||||| | ||||||||||| || || || || || || ||
Sbjct 55161 ATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATA 55220
Query 167506 TTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTTCATATG 167565
|| |||||| |||| || ||||||| || || || |||||| |||| ||||||||||||
Sbjct 55221 TTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATG 55280
Query 167566 ATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTA 167625
||||| || || ||| | |||| | || |||| | || |||||||||| || |||
Sbjct 55281 ATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTA 55340
Query 167626 GAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTT 167667
|| |||||||| | |||||||||||| ||||| || |||
Sbjct 55341 GAAAATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382
>seq2510
Length=74850
Score = 136 bits (150), Expect = 4e-27
Identities = 149/197 (76%), Gaps = 1/197 (1%)
Strand=Plus/Minus
Query 167833 GGTCTGGCTCTTAATCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAG 167892
||||||||||| || || || || || || ||| |||| || || ||| | || |||||
Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941
Query 167893 GATCCAGAGTTTGAAACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCA 167952
||||| || ||||| |||||||| || ||||| || ||| | || |||||| |||| ||
Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881
Query 167953 TGGTTAGCACCTATCGATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCA 168012
||| | || || ||||| |||||||| ||| || | ||||| ||||| ||||| ||
Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 56821
Query 168013 CGAGGCAA-CGCACTAT 168028
|| || || | ||||||
Sbjct 56820 CGTGGAAACCTCACTAT 56804
>seq587
Length=401750
Score = 114 bits (126), Expect = 1e-20
Identities = 123/163 (75%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 166593 CACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGG 166652
||| ||||| |||||||| || |||||||| |||||||| || | ||||| |||| ||
Sbjct 44408 CACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGG 44467
Query 166653 TCGTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTAT 166712
|||||| | || || | || ||| || |||| | | | || ||||||||||||||
Sbjct 44468 TCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAGTTAT 44527
Query 166713 GCATGAGCGTAACGCACACAACTTCCCCCTCGACCTCGCTGCT 166755
|||||| | ||| | || ||||| ||| | ||||| ||||||
Sbjct 44528 GCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570
>seq37
Length=530226
Score = 98.7 bits (108), Expect = 1e-15
Identities = 190/279 (68%), Gaps = 1/279 (0%)
Strand=Plus/Plus
Query 167626 GAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAGGCATTCGATTCTACT 167685
|| |||| ||| | |||||||||||| || || || ||| || || || | ||
Sbjct 49806 GAAAATATTTTATTTGAAGATGGTGATTGTGCTAATACATTTTGTGCGTTTAATCCAACC 49865
Query 167686 CAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATCTTCGGC 167745
|| | | ||| |||||||||||||| || || ||||| || ||||| || ||||| ||
Sbjct 49866 CAAGTTGGAGAAACTTATTCAATGGTCACCGCTAACCGCTT-TGGTCCCAAATCTTTGGG 49924
Query 167746 ATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCGTTCCCGTTATGGGA 167805
|| ||| ||| ||| | ||| | ||||| ||||||| ||| || | || | ||
Sbjct 49925 GTTTTTTTTTCCAATAAATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACCGGT 49984
Query 167806 CTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTTCGTGCTTACGATTTC 167865
| |||| | | | | | | ||||||||| | || || || | || | |||
Sbjct 49985 TTATGGATGAGAGCTCCTAGAGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGCTTC 50044
Query 167866 GTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTT 167904
||||| ||||| ||| | || ||||| ||||| || |||
Sbjct 50045 GTTTCCCAAGAAATCTGTGCAGCGGAAGATCCTGAATTT 50083
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561053183803600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |