Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq752 306 4e-78 seq1263 271 9e-68 seq2510 136 4e-27 seq587 114 1e-20 seq37 98.7 1e-15 >seq752 Length=193215 Score = 306 bits (338), Expect = 4e-78 Identities = 480/679 (71%), Gaps = 10/679 (1%) Strand=Plus/Minus Query 167080 CTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGTCACG 167139 || ||||| ||| ||| | ||| | || || ||| |||| || || || || || || Sbjct 189612 CTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACT 189553 Query 167140 AGTTGGTATACTCATGGACTCGC--GTCCAGTTATCTTGAGGG-TGCGAACTTTCTTA-C 167195 ||||||||||||||| | || || | ||| | || || ||| | ||||||| | Sbjct 189552 TCATGGTATACTCATGGATTGGCTAGTTCC--TATTTGGAAGGATGCAA--TTTCTTAAC 189497 Query 167196 TGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGGGGTCC 167255 || |||||| ||||| || || | | | ||||| || | | ||||| ||||| Sbjct 189496 CGCCGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCC 189437 Query 167256 TGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTTGTGGC 167315 |||| | ||||| ||||| | ||| |||| | || || || ||| | ||||| || Sbjct 189436 TGAAGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGC 189377 Query 167316 GCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGC-C 167374 |||||||| | || | || || ||||| ||| | || || ||||||||||||| | Sbjct 189376 TCTCCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTC 189317 Query 167375 TGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTA 167434 || | | | || || || ||||| || || ||||||| ||| |||||||| || ||| Sbjct 189316 TGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTT 189258 Query 167435 GCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAG 167494 || ||||| | ||||| || ||||| | ||||||||||| || || || | Sbjct 189257 CTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTG 189198 Query 167495 TCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATC 167554 | || || || || |||||| |||| || ||||||| || || || |||||| |||| | Sbjct 189197 TAGCGGCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACC 189138 Query 167555 CATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATG 167614 |||||||||||||||| || || ||| | |||| | || |||| | || ||||||| Sbjct 189137 CATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATG 189078 Query 167615 GTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAGGCAT 167674 ||| ||| ||||| |||||||| | |||||||||||| ||||| || || || | Sbjct 189077 GTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGT 189018 Query 167675 TCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTC 167734 | | | || || | ||||| |||||||||||||| || || ||||| || ||||| | Sbjct 189017 TTAACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCC 188958 Query 167735 AGATCTTCGGCATTGCTTT 167753 | ||||| || ||||||| Sbjct 188957 AAATCTTTGGGGTTGCTTT 188939 >seq1263 Length=120960 Score = 271 bits (300), Expect = 9e-68 Identities = 414/582 (71%), Gaps = 10/582 (2%) Strand=Plus/Plus Query 167091 TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATAC 167150 ||| ||| | ||| | || || ||| |||| || || || || || || |||||||| Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865 Query 167151 TCATGGACTCGC--GTCCAGTTATCTTGAGGG-TGCGAACTTTCTTA-CTGCGGCAGTTA 167206 ||||||| | || || | ||| | || || ||| | ||||||| | || |||||| Sbjct 54866 TCATGGATTGGCTAGTTCC--TATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTT 54921 Query 167207 GTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGGGGTCCTGAATCTCAAG 167266 ||||| || || | | | ||||| || | | ||||||||||||||| | |||| Sbjct 54922 CGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAG 54981 Query 167267 GGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAG 167326 | ||||| | ||| |||| | || || || ||| | ||||| || |||||||| | Sbjct 54982 GAGATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCG 55041 Query 167327 CCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGC-CTGATTGGTATC 167385 | || | || || ||||| ||| | || || |||||||||||||| ||| | | | Sbjct 55042 CTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TG 55100 Query 167386 CGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTTCCTT 167445 || || || ||||| || || ||||||| ||| |||||||| || ||| || ||||| Sbjct 55101 CGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTG 55160 Query 167446 CTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGCCATC 167505 | ||||| || ||||| | ||||||||||| || || || || || || || Sbjct 55161 ATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATA 55220 Query 167506 TTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTTCATATG 167565 || |||||| |||| || ||||||| || || || |||||| |||| |||||||||||| Sbjct 55221 TTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATG 55280 Query 167566 ATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTA 167625 ||||| || || ||| | |||| | || |||| | || |||||||||| || ||| Sbjct 55281 ATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTA 55340 Query 167626 GAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTT 167667 || |||||||| | |||||||||||| ||||| || ||| Sbjct 55341 GAAAATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382 >seq2510 Length=74850 Score = 136 bits (150), Expect = 4e-27 Identities = 149/197 (76%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 167833 GGTCTGGCTCTTAATCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAG 167892 ||||||||||| || || || || || || ||| |||| || || ||| | || ||||| Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941 Query 167893 GATCCAGAGTTTGAAACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCA 167952 ||||| || ||||| |||||||| || ||||| || ||| | || |||||| |||| || Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881 Query 167953 TGGTTAGCACCTATCGATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCA 168012 ||| | || || ||||| |||||||| ||| || | ||||| ||||| ||||| || Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 56821 Query 168013 CGAGGCAA-CGCACTAT 168028 || || || | |||||| Sbjct 56820 CGTGGAAACCTCACTAT 56804 >seq587 Length=401750 Score = 114 bits (126), Expect = 1e-20 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 166593 CACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGG 166652 ||| ||||| |||||||| || |||||||| |||||||| || | ||||| |||| || Sbjct 44408 CACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGG 44467 Query 166653 TCGTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTAT 166712 |||||| | || || | || ||| || |||| | | | || |||||||||||||| Sbjct 44468 TCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAGTTAT 44527 Query 166713 GCATGAGCGTAACGCACACAACTTCCCCCTCGACCTCGCTGCT 166755 |||||| | ||| | || ||||| ||| | ||||| |||||| Sbjct 44528 GCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570 >seq37 Length=530226 Score = 98.7 bits (108), Expect = 1e-15 Identities = 190/279 (68%), Gaps = 1/279 (0%) Strand=Plus/Plus Query 167626 GAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAGGCATTCGATTCTACT 167685 || |||| ||| | |||||||||||| || || || ||| || || || | || Sbjct 49806 GAAAATATTTTATTTGAAGATGGTGATTGTGCTAATACATTTTGTGCGTTTAATCCAACC 49865 Query 167686 CAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATCTTCGGC 167745 || | | ||| |||||||||||||| || || ||||| || ||||| || ||||| || Sbjct 49866 CAAGTTGGAGAAACTTATTCAATGGTCACCGCTAACCGCTT-TGGTCCCAAATCTTTGGG 49924 Query 167746 ATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCGTTCCCGTTATGGGA 167805 || ||| ||| ||| | ||| | ||||| ||||||| ||| || | || | || Sbjct 49925 GTTTTTTTTTCCAATAAATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACCGGT 49984 Query 167806 CTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTTCGTGCTTACGATTTC 167865 | |||| | | | | | | ||||||||| | || || || | || | ||| Sbjct 49985 TTATGGATGAGAGCTCCTAGAGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGCTTC 50044 Query 167866 GTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTT 167904 ||||| ||||| ||| | || ||||| ||||| || ||| Sbjct 50045 GTTTCCCAAGAAATCTGTGCAGCGGAAGATCCTGAATTT 50083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561053183803600