Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq587 91.5 4e-14 seq1519 82.4 2e-11 >seq587 Length=401750 Score = 91.5 bits (100), Expect = 4e-14 Identities = 120/165 (73%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||| | |||||||| |||| ||| | || ||||| ||||||||||| || Sbjct 44570 AGCAGCTAGGTCCATGGGAAAGTTATGAGTATTATGTTCATGCATAACTTCCATACCAAG 44511 Query 40589 ---ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTAC 40645 || || |||| || |||||| ||||| ||| || ||| | | || || Sbjct 44510 GTTACCATGA---TTAATAATATCAGCTTAAGTATTAATTACACGACCTTGACTATCAAC 44454 Query 40646 TACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGT 40690 ||| || ||||| || || |||||||| ||||| ||||||||||| Sbjct 44453 TACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGT 44409 >seq1519 Length=169030 Score = 82.4 bits (90), Expect = 2e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 41005 GGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAG 41064 |||| | || ||| |||||||| || | | |||||||||||||||||||||||| ||| Sbjct 82622 GGAATATAATCATAAAGTTGAAAGTACTAGAGATTCCTAAAGGCATACCATCAGAAAAAC 82681 Query 41065 AACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGT 41124 || ||||| | |||||| | | ||| || || ||| |||| | | ||||| | Sbjct 82682 TCCCATGACCAATTGGATAGATCATGAAAACGGCGGTAGCAGCTGCAACAGAAGCTGAAT 82741 Query 41125 ATGCCACAAATATCCATGGTCTCATACC 41152 |||| ||| ||||| | | |||||| Sbjct 82742 ATGCAACAGCAATCCAGCGGCACATACC 82769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143655013145646