Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_021072.1
Length=178807
Score E
Sequences producing significant alignments: (Bits) Value
seq752 329 4e-85
seq1263 273 2e-68
seq98 91.5 2e-13
seq1519 84.2 3e-11
>seq752
Length=193215
Score = 329 bits (364), Expect = 4e-85
Identities = 485/680 (71%), Gaps = 10/680 (1%)
Strand=Plus/Plus
Query 66863 AAACGCAATACCAAAGATCTGAGACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTC 66922
||| |||| |||||||| || ||||| |||||||| || || |||||||| ||||||||
Sbjct 188938 AAAAGCAACCCCAAAGATTTGGGACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTC 188997
Query 66923 TTCCTCTTGAGTAGAGTCGAATGCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAG 66982
||| |||| || | || || || ||| || ||||| |||||||||||| | |
Sbjct 188998 TTCAGCTTGGGTTGGGTTAAACGCACGGAATGTATTTGCACCATCACCATCTTCAAATAA 189057
Query 66983 AGTATTCTCTACTGTAACACCATGAATGGCAGAAAGCAATGCACCACCCAGGATACCTGC 67042
|||||| ||||| ||| ||||||| || || | |||| || | |||| | ||| ||
Sbjct 189058 AGTATTTTCTACAGTAGCACCATGGATAGCGCATAGCAGAGCCGCGCCCAATACACCGGC 189117
Query 67043 TACACCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAG 67102
|| |||||||||||||| |||||||| ||||| ||||| || ||||| | || || |
Sbjct 189118 AACTCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTGGAAAAAAAGGAT 189177
Query 67103 GAATCGAAAGATTGCTGAGACCCCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAG 67162
||||||||| || || | || || ||| || || || ||||||| || ||||| ||
Sbjct 189178 GAATCGAAATATAGCCGCTACACCAAAACTGGGCGCAAAGAACCAACCAGACTGACCTAG 189237
Query 67163 AGGGTAGATGAGAAAGACACTAACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATT 67222
|| || || || || ||| |||||||||||| || ||| ||||||| || || |||||
Sbjct 189238 TGGATAAATCAGGAATACAGAAACAAAAACAGCAATTGGAGCAGAGAATGCGATTGCATT 189297
Query 67223 GTAGGGACGGATACCGATGAGA-CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTA 67281
|| || || | | || ||| || || ||||||| || || | ||| ||||| ||||
Sbjct 189298 ATAAGGTCGCA-ATTGAACAGACCGAGCAAGTTCAATTTGACGTAACATAAAACCTATTA 189356
Query 67282 GAGCGAAAGCCCCGTGGAGCGCCACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGA 67341
| |||||| |||||||| || ||||| |||| || || || | |||| ||| ||
Sbjct 189357 GTCCGAAAGTGCCGTGGAGAGCAACAAACGTCCACAGACCGCCCAATTGGCACCAACGAG 189416
Query 67342 CGAAATCCCCCTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAG 67401
||||| || || | |||||||| || |||| | | ||||| | | | || |
Sbjct 189417 TCAAATCTCCTTGGGCTTCAGGACCTCATAGTAACAACAACGAATGTGCTAAACTATTGG 189476
Query 67402 CAGGCGTTGACACAGCCGCTGTGAGAAAATTAGCA-CCCTCAAGAT---AACTAGACGCG 67457
|||| || || || || || || | ||||| ||| || || | || ||||| ||
Sbjct 189477 CAGGAGTCGAAACTGCGGCGGTTAAGAAATT-GCATCCTTCCAAATAGGAACTA---GCC 189532
Query 67458 AGTCCGTGAGTGTACCAGCTTGTGACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCC 67517
| ||| ||||| ||||| || ||||| || ||||| |||| |||||| || | ||
Sbjct 189533 AATCCATGAGTATACCATGAAGTTACAAAGGTTGTACCTGTAAACCAGCCCCCTAAAGCG 189592
Query 67518 ATATAAGCAGTGGGAAAAAG 67537
| ||| ||| ||||| ||
Sbjct 189593 AAATAGGCACAAGGAAAGAG 189612
>seq1263
Length=120960
Score = 273 bits (302), Expect = 2e-68
Identities = 404/566 (71%), Gaps = 10/566 (2%)
Strand=Plus/Minus
Query 66966 TCACCATCTTCATACAGAGTATTCTCTACTGTAACACCATGAATGGCAGAAAGCAATGCA 67025
|||||||||||| | | |||||| ||||| || ||||||| || || | |||| ||
Sbjct 55366 TCACCATCTTCAAATAAAGTATTTTCTACAATAGCACCATGGATAGCGCATAGCAGAGCC 55307
Query 67026 CCACCCAGGATACCTGCTACACCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAAT 67085
| |||| | ||| || || |||||||||||||| |||||||| ||||| ||||| ||
Sbjct 55306 GCGCCCAATACACCGGCAACTCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAAC 55247
Query 67086 CCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCCCGAAAGATGGAGCGAAAAAC 67145
||||| | || || | ||||||||| || || | || || ||| || || || |||
Sbjct 55246 CCTTGGAAAAAAAGGATGAATCGAAATATAGCCGCTACACCAAAACTGGGCGCAAAGAAC 55187
Query 67146 CAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAACAAAAACAGCGATAGGACCA 67205
|||| || ||||| || || || || || || ||| |||||||||||| || ||| ||
Sbjct 55186 CAACCAGACTGACCTAGTGGATAAATCAGGAATACAGAAACAAAAACAGCAATTGGAGCA 55127
Query 67206 GAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA-CGTGCCAGTTCAAACTGGCG 67264
||||| || || ||||| || || || | | || ||| || || |||||||| || ||
Sbjct 55126 GAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACAGACCGAGCAAGTTCAAATTGACG 55068
Query 67265 AAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCCACAAAATTCCAGAGTCCTCC 67324
| ||| ||||| ||||| ||||||| |||||||| || ||||| |||| || || ||
Sbjct 55067 TAACATAAAACCTATTAGTCCGAAAGCGCCGTGGAGAGCAACAAACGTCCACAGACCGCC 55008
Query 67325 AAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGACCCCAAAGTAGAAGAAGAGA 67384
| |||| ||| || ||||| || || | ||||||||||| |||| | | ||
Sbjct 55007 CAATTGGCACCAACGAGTNAAATCTCCTTGGGCTTCAGGACCCCATAGTAACAACAACGA 54948
Query 67385 ATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTGAGAAAATTAGCA-CCCTCAA 67443
||| | | | || ||||| || || || || || || | ||||| ||| || || |
Sbjct 54947 ATGTGCTAAACTATTGGCAGGAGTCGAAACTGCGGCGGTTAAGAAATT-GCATCCTTCCA 54889
Query 67444 GAT---AACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTGACAAACGTAGTACCAGTAA 67500
|| ||||| || | ||| ||||| ||||| || ||||| || ||||| ||||
Sbjct 54888 AATAGGAACTA---GCCAATCCATGAGTATACCATGAAGTTACAAAGGTTGTACCTGTAA 54832
Query 67501 GCCAGCCACCAATTGCCATATAAGCA 67526
|||||| || | || | ||| |||
Sbjct 54831 ACCAGCCCCCTAAAGCGAAATAGGCA 54806
>seq98
Length=412963
Score = 91.5 bits (100), Expect = 2e-13
Identities = 136/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 68540 AAGGACCACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGT 68599
|||||||||||||||| ||||||||||||| || ||| ||| | || || |||||||
Sbjct 211431 AAGGACCACCATTGTATAACCACTCATCAACGGATGCCACTTTTTAGATTGGGTAAAAGT 211490
Query 68600 GAAGACCAATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACA 68659
| | ||| || || || |||||| || || |||| || ||||| ||||| |
Sbjct 211491 GCAAACCTATAGCTGCAAAAGTAGGAATAATGACATAGAAAATAATATTGTTGCCATAAA 211550
Query 68660 GAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGA 68719
|| || | || |||| |||| ||||||||| | ||| | | || ||| ||||
Sbjct 211551 ATAGGGACCTAGAAACAAATTCATGAATACCATAAAAATCCCTTGAAGTAGTAGCAATGA 211610
Query 68720 AGGCGACGATGAA 68732
|||| | |||||
Sbjct 211611 AGGCAATAATGAA 211623
Score = 89.7 bits (98), Expect = 6e-13
Identities = 139/196 (71%), Gaps = 6/196 (3%)
Strand=Plus/Plus
Query 68540 AAGGACCACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGT 68599
|||||||||||||||| ||||||||||||| || ||| ||| | || || |||||||
Sbjct 210539 AAGGACCACCATTGTATAACCACTCATCAATGGATGCCACTTTTTAGATTGGGTAAAAGT 210598
Query 68600 GAAGACCAATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACA 68659
| | ||| || || || |||||| || || |||| || ||||| ||||| |
Sbjct 210599 GTAAACCTATAGCTGCAAAAGTAGGAATAATGACATAGAAAATAATATTGTTGCCATAAA 210658
Query 68660 GAAGTGAACCAGCAACAGGTTCACGAATACCAT--CGATGTC-CACAGGGGGAGCAGCGA 68716
|| || | || |||| || ||||||||||| ||| | | ||||| |||| |
Sbjct 210659 ATAGGGACCTAGAAACAAATTAACGAATACCATAAAAATGCCTTAAAGGGGTAGCA---A 210715
Query 68717 TGAAGGCGACGATGAA 68732
||||||| | |||||
Sbjct 210716 TGAAGGCAATAATGAA 210731
>seq1519
Length=169030
Score = 84.2 bits (92), Expect = 3e-11
Identities = 102/139 (73%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 68330 AGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAG 68389
|||||||||||| ||| || || | |||||| | ||||| || || ||||| | |
Sbjct 82637 AGTTGAAAGTACTAGAGATTCCTAAAGGCATACCATCAGAAAAACTCCCATGACCAATTG 82696
Query 68390 GATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAGATCC 68449
|||||| || ||| || |||| || |||||||||| || || ||||||||| ||||
Sbjct 82697 GATAGATCATGAAAACGGCGGTAGCAGCTGCAACAGAAGCTGAATATGCAACAGCAATCC 82756
Query 68450 AAGGACGCATACCAAGACG 68468
| | | |||||| | |||
Sbjct 82757 AGCGGCACATACCCAAACG 82775
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571855832767080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |