Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq1034 122 2e-22
seq6423 84.2 4e-11
>seq1034
Length=134858
Score = 122 bits (134), Expect = 2e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| |||||||| | ||||| |||| || | || | || || ||| || |||||
Sbjct 72320 ATGCCACCTCTAAGACGAAGAACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCA 72261
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| | ||| || ||| || | ||| || || ||||| || || ||||| |||||||||
Sbjct 72260 GCAAGCGTCCTGCCATCCTCAAGTTGCTTGCCAGCAAATATCAACCTCTGCTGATCAGGA 72201
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || ||||| || || || || |||| ||| | ||| ||| || || ||| |||
Sbjct 72200 GGGATACCTTCCTTGTCCTGAATCTTGGCTTTCACATTGTCAATTGTGTCTGAACTTTCA 72141
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || ||||||||||| || || |||||||| ||||| || |||||
Sbjct 72140 ACCTCCAGTGTTATAGTTTTTCCAGTAAGCGTTTTCACAAAAATCTGCAT 72091
Score = 104 bits (114), Expect = 4e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| ||||| || | ||||| ||||| |||| || | ||| || |||||||||||
Sbjct 72092 ATGCCACCCCTGAGGCGAAGGACCAGGTGCAGGGTGGACTCCTTCTGGATATTATAGTCC 72033
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| | || | ||| || | || || || |||||||| | |||||| |||||||||
Sbjct 72032 GCAAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCTCTGCTGATCAGGA 71973
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| ||||| || || || || || || | ||| | ||| |||||| || || |||
Sbjct 71972 GGAATTCCCTCCTTGTCCTGAATCTTTGCTTTCACATTATCAATAGTGTCTGAGCTTTCA 71913
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || || || || || || || ||||| || || ||||||||
Sbjct 71912 ACCTCAAGGGTGATGGTCTTGCCAGTAAGTGTTTTCACGAAGATTTGCAT 71863
>seq6423
Length=19511
Score = 84.2 bits (92), Expect = 4e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|| || ||||| || || | | ||| || || ||||| || ||||| || || || ||
Sbjct 9904 TGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATCCCTTCCTTGTCCTGAATC 9963
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|||| || | ||| || ||||||||||| |||||||| || || || || || ||
Sbjct 9964 TTGGCCTTCACATTGTCGATGGTATCGGAAGATTCAACTTCGAGGGTAATGGTCTTCCCG 10023
Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360
||||| ||||| || || || |||||
Sbjct 10024 GTTAGGGTTTTCACGAAGATCTGCAT 10049
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899342118712080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |