Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1057 95.1 2e-14 seq1034 95.1 2e-14 seq715 84.2 3e-11 >seq1057 Length=141302 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| ||||||| | ||||||||||| || ||| | || || || ||| Sbjct 136495 ATGCAGATTTTTGTTAAAACCCTTACTGGAAAAACAATAACAATGGAGGTTGAGAGTTCA 136436 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || ||||| |||||||| || ||||| | ||||| ||| Sbjct 136435 GATACGATTGATAATGTCAAGGCCAAAATCCAAGATAAGGAGGGCATCCTACCAGATCAA 136376 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 | || | || | ||| |||||||| || |||||| || ||| | |||| || ||| Sbjct 136375 CGGAGGATCATCTTTGCTGGTAAGCAACTTGAAGATGGAAGGACTCTTGCAGACTACAAT 136316 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || || | || |||||||| ||| Sbjct 136315 ATCCAGAAGGAATCAACACTTCATTTGGTG 136286 Score = 86.0 bits (94), Expect = 9e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | ||||| ||||| || || | || || ||| ||| Sbjct 136951 ATGCAGATTTTTGTGAAAACTCTTACTGGGAAAACCATCACTCTGGAGGTTGAAAGCTCT 136892 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| || || || || ||||||||||| ||||| || || Sbjct 136891 GATACAATTGACAATGTGAAAGCCAAGATTCAGGACAAAGAAGGCATCCCTCCTGACCAG 136832 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | ||| |||||||| || || ||| ||| || | | || ||||| Sbjct 136831 CAGAGGCTGATATTTGCTGGTAAGCAACTTGAGGATGGCAGGACACTTGCTGACTATAAC 136772 Query 156003 AT 156004 || Sbjct 136771 AT 136770 >seq1034 Length=134858 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | |||||||| || || || || || || || ||| Sbjct 72547 ATGCAGATTTTTGTGAAGACCCTTACTGGAAAGACGATCACTTTGGAGGTTGAGAGTTCA 72606 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || || || || ||||| || ||||| || ||||| ||| Sbjct 72607 GATACCATTGATAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCACCAGACCAA 72666 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | |||||||||||| || |||||| || || | ||||||| ||| Sbjct 72667 CAGAGGCTGATCTTTGCCGGTAAGCAACTTGAAGATGGGAGGACCCTTGCAGATTACAAT 72726 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || |||||| | || ||||| || ||| Sbjct 72727 ATTCAGAAAGAGTCAACCCTTCACTTGGTG 72756 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | |||||||||||||| ||| | || || ||| ||| Sbjct 72091 ATGCAGATTTTTGTGAAAACGCTTACTGGAAAAACTATAACACTGGAGGTTGAAAGTTCA 72150 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || |||||| || || || || || ||||| || ||||| || || Sbjct 72151 GACACAATTGACAATGTGAAAGCCAAGATTCAGGACAAGGAAGGTATCCCTCCTGATCAG 72210 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAAC 155986 || || ||||| | ||| || ||||| || || ||| ||| || Sbjct 72211 CAGAGGTTGATATTTGCTGGCAAGCAACTTGAGGATGGCAGGAC 72254 >seq715 Length=381403 Score = 84.2 bits (92), Expect = 3e-11 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 || ||||| ||||| ||| | |||||||||| || || || ||||| || || Sbjct 115245 AAGCACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTC 115304 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 ||||| ||||| | ||| | ||||| | ||||||||||| ||| || | ||| ||| Sbjct 115305 AACCCAGGCATCA-ACCCCGCTTTTTCAACCAAAATATCGCGCAGAAGCTTCCAGAGAAG 115363 Query 18275 AATATACCCTCAACGCACGCGAACGC 18300 || || ||||| ||||| |||||||| Sbjct 115364 AAAATCCCCTCCACGCAAGCGAACGC 115389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731617958080400