Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq1057 95.1 2e-14
seq1034 95.1 2e-14
seq715 84.2 3e-11
>seq1057
Length=141302
Score = 95.1 bits (104), Expect = 2e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| ||||||| | ||||||||||| || ||| | || || || |||
Sbjct 136495 ATGCAGATTTTTGTTAAAACCCTTACTGGAAAAACAATAACAATGGAGGTTGAGAGTTCA 136436
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || || || ||||| |||||||| || ||||| | ||||| |||
Sbjct 136435 GATACGATTGATAATGTCAAGGCCAAAATCCAAGATAAGGAGGGCATCCTACCAGATCAA 136376
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
| || | || | ||| |||||||| || |||||| || ||| | |||| || |||
Sbjct 136375 CGGAGGATCATCTTTGCTGGTAAGCAACTTGAAGATGGAAGGACTCTTGCAGACTACAAT 136316
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032
|| || || | || |||||||| |||
Sbjct 136315 ATCCAGAAGGAATCAACACTTCATTTGGTG 136286
Score = 86.0 bits (94), Expect = 9e-12
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | ||||| | ||||| ||||| || || | || || ||| |||
Sbjct 136951 ATGCAGATTTTTGTGAAAACTCTTACTGGGAAAACCATCACTCTGGAGGTTGAAAGCTCT 136892
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || |||||| || || || || ||||||||||| ||||| || ||
Sbjct 136891 GATACAATTGACAATGTGAAAGCCAAGATTCAGGACAAAGAAGGCATCCCTCCTGACCAG 136832
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || |||| | ||| |||||||| || || ||| ||| || | | || |||||
Sbjct 136831 CAGAGGCTGATATTTGCTGGTAAGCAACTTGAGGATGGCAGGACACTTGCTGACTATAAC 136772
Query 156003 AT 156004
||
Sbjct 136771 AT 136770
>seq1034
Length=134858
Score = 95.1 bits (104), Expect = 2e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || | |||||||| || || || || || || || |||
Sbjct 72547 ATGCAGATTTTTGTGAAGACCCTTACTGGAAAGACGATCACTTTGGAGGTTGAGAGTTCA 72606
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || || || || || || ||||| || ||||| || ||||| |||
Sbjct 72607 GATACCATTGATAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCACCAGACCAA 72666
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || |||| | |||||||||||| || |||||| || || | ||||||| |||
Sbjct 72667 CAGAGGCTGATCTTTGCCGGTAAGCAACTTGAAGATGGGAGGACCCTTGCAGATTACAAT 72726
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032
|| |||||| | || ||||| || |||
Sbjct 72727 ATTCAGAAAGAGTCAACCCTTCACTTGGTG 72756
Score = 84.2 bits (92), Expect = 3e-11
Identities = 117/164 (71%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | ||||| | |||||||||||||| ||| | || || ||| |||
Sbjct 72091 ATGCAGATTTTTGTGAAAACGCTTACTGGAAAAACTATAACACTGGAGGTTGAAAGTTCA 72150
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || |||||| || || || || || ||||| || ||||| || ||
Sbjct 72151 GACACAATTGACAATGTGAAAGCCAAGATTCAGGACAAGGAAGGTATCCCTCCTGATCAG 72210
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAAC 155986
|| || ||||| | ||| || ||||| || || ||| ||| ||
Sbjct 72211 CAGAGGTTGATATTTGCTGGCAAGCAACTTGAGGATGGCAGGAC 72254
>seq715
Length=381403
Score = 84.2 bits (92), Expect = 3e-11
Identities = 107/146 (73%), Gaps = 1/146 (1%)
Strand=Plus/Plus
Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214
|| ||||| ||||| ||| | |||||||||| || || || ||||| || ||
Sbjct 115245 AAGCACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTC 115304
Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274
||||| ||||| | ||| | ||||| | ||||||||||| ||| || | ||| |||
Sbjct 115305 AACCCAGGCATCA-ACCCCGCTTTTTCAACCAAAATATCGCGCAGAAGCTTCCAGAGAAG 115363
Query 18275 AATATACCCTCAACGCACGCGAACGC 18300
|| || ||||| ||||| ||||||||
Sbjct 115364 AAAATCCCCTCCACGCAAGCGAACGC 115389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731617958080400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |