Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq1057 109 1e-18
seq4991 105 1e-17
seq1034 104 5e-17
seq379 91.5 3e-13
>seq1057
Length=141302
Score = 109 bits (120), Expect = 1e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| |||||||| ||||| | || | |||| |||| || || || ||||| |||
Sbjct 136722 ATCCCACCTCTGAGACGAAGGACAAGGTGTAGGGTAGATTCCTTCTGAATGTTATAGTCA 136781
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | ||| | |||| || | ||| ||||||||||| || | ||||| || |||||
Sbjct 136782 GCAAGTGTCCTGCCATCCTCAAGTTGCTTACCAGCAAATATCAGCCTCTGCTGGTCAGGA 136841
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || |||||||| || || || || ||| ||||| || | ||| || |||
Sbjct 136842 GGGATGCCTTCTTTGTCCTGAATCTTGGCTTTCACATTGTCAATTGTATCAGAGCTTTCA 136901
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || ||||| |||||||| ||||| | ||||| | ||| ||||||||
Sbjct 136902 ACCTCCAGAGTGATGGTTTTCCCAGTAAGAGTTTTCACAAAAATCTGCAT 136951
Score = 109 bits (120), Expect = 1e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| || || |||||||| | |||| || | ||| | |||||| ||| || || ||
Sbjct 136950 ATGCCTCCCCTAAGACGAAGAACTAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCT 137009
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | ||| || |||| || | || |||||||||||||| | ||||||||||||||
Sbjct 137010 GCAAGTGTGCGGCCATCCTCTAGCTGCTTACCAGCAAAGATAAGCCTCTGTTGATCAGGA 137069
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || || || || || || || ||| |||||| || | || || |||
Sbjct 137070 GGAATCCCCTCCTTGTCCTGAATCTTTGCTTTCACATTATCAATGGTGTCAGAGCTTTCA 137129
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || || ||||| || ||||| | ||||||| ||| ||||||||
Sbjct 137130 ACCTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTAACAAAGATCTGCAT 137179
Score = 96.9 bits (106), Expect = 7e-15
Identities = 131/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
|||||| || || | | || | | |||| || | ||| |||||||||||||| | ||
Sbjct 136313 GATATTGTAGTCTGCAAGAGTCCTTCCATCTTCAAGTTGCTTACCAGCAAAGATGATCCT 136372
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
| ||||||| ||| | || || || |||||||| ||||| || |||||| || |
Sbjct 136373 CCGTTGATCTGGTAGGATGCCCTCCTTATCTTGGATTTTGGCCTTGACATTATCAATCGT 136432
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
|||||| || || || | || || ||||| ||||| | ||||||| ||| |||||
Sbjct 136433 ATCTGAACTCTCAACCTCCATTGTTATTGTTTTTCCAGTAAGGGTTTTAACAAAAATCTG 136492
Query 192534 CAT 192536
|||
Sbjct 136493 CAT 136495
Score = 86.0 bits (94), Expect = 1e-11
Identities = 113/157 (72%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439
|||| || | ||||| ||||||||||| | || || || || || || || |||||||
Sbjct 136111 CATCCTCAAGCTGTTTTCCAGCAAAGATCAGCCTTTGCTGGTCCGGAGGAATCCCTTCTT 136170
Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499
| || || ||||| | |||||||| || | |||||| || || || | ||| |
Sbjct 136171 TGTCCTGAATTTTGGTCTTTACATTGTCAATGGTATCTGAGCTCTCCACCTCCAAAGTTA 136230
Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
| || || ||||| || || || | ||||||||||||
Sbjct 136231 TAGTCTTGCCAGTCAAGGTCTTCACAAATATCTGCAT 136267
>seq4991
Length=48504
Score = 105 bits (116), Expect = 1e-17
Identities = 164/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365
|||||||| | ||||| | || ||||| | || | ||| ||| || || || || ||
Sbjct 8817 ATACCACCACGCAGACGGAGAACCAAATGAAGGGTTGACTCCTTTTGA-ATGTTGTAGTC 8875
Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425
| | ||| || |||| || | || || ||||||||||| | ||||| ||||| ||
Sbjct 8876 ACCAAGTGTACGACCATCTTCAAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGG 8935
Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485
||| || ||||| ||||| || ||||| ||| ||||| || | ||| || |||
Sbjct 8936 TGGGATGCCTTCCTTATCCTGAATTTTGGCTTTGACATTGTCAATGGTATCAGAGCTTTC 8995
Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| || | ||| || ||||| ||||| | |||||| | ||| || ||||||
Sbjct 8996 CACCTCCAAAGTGATTGTTTTCCCAGTGAGTGTTTTCACAAAGATTTGCATT 9047
Score = 98.7 bits (108), Expect = 2e-15
Identities = 162/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365
|||||||| | |||||| | || ||||| | || | ||| ||| || || ||||| ||
Sbjct 8589 ATACCACCACGAAGACGGAGAACCAAATGAAGGGTCGACTCCTTTTGA-ATGTTATAGTC 8647
Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425
|| | |||||| | || || | ||||| ||||||||||| | ||||| ||||| ||
Sbjct 8648 AGCAAGTGTTCGACCGTCCTCGAGCTGTTTCCCAGCAAAGATAAGCCTCTGCTGATCTGG 8707
Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485
||| || || || || || || ||||| || ||||| || | || || ||
Sbjct 8708 TGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTGTCAATGGTGTCAGAGCTCTC 8767
Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || ||||| || ||||| || || | ||| || | ||| ||||||||
Sbjct 8768 AACCTCCAGAGTGATAGTTTTGCCCGTGAGTGTCTTGACAAAAATCTGCAT 8818
>seq1034
Length=134858
Score = 104 bits (114), Expect = 5e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | ||||| | || | || | ||||| ||| || ||| || || |||
Sbjct 72548 ATACCACCACGCAGACGGAGAACCAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCA 72489
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | || || |||| || | |||||| ||||||||||| | || || ||||| ||
Sbjct 72488 GCAAGAGTACGACCATCCTCAAGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGATCTGGA 72429
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| |||||||| || ||||| || ||| ||| ||||| |||| ||||| ||
Sbjct 72428 GGGATTCCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCGATAGTGTCTGAACTCTCC 72369
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| | || ||||| || ||||| | || || | ||| ||||||||
Sbjct 72368 ACTTCCAAGGTGATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 72319
Score = 100 bits (110), Expect = 6e-16
Identities = 132/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
||||||||| || | | || || |||| |||| || ||||||||||| || | |||
Sbjct 72045 GATATTATAGTCCGCAAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCT 71986
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
||| |||||||| || ||||| || || || || || || ||| |||||| ||||
Sbjct 71985 CTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGAATCTTTGCTTTCACATTATCAATAGT 71926
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
||||| ||| || || || || ||||| || ||||| | |||||| | || || ||
Sbjct 71925 GTCTGAGCTTTCAACCTCAAGGGTGATGGTCTTGCCAGTAAGTGTTTTCACGAAGATTTG 71866
Query 192534 CAT 192536
|||
Sbjct 71865 CAT 71863
Score = 91.5 bits (100), Expect = 3e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| |||||||||||||| | || || || | || | || || || || || |||
Sbjct 72320 ATGCCACCTCTAAGACGAAGAACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCA 72261
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | || | |||| || | ||| || |||||||| || || ||||| ||||||||
Sbjct 72260 GCAAGCGTCCTGCCATCCTCAAGTTGCTTGCCAGCAAATATCAACCTCTGCTGATCAGGA 72201
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || || || || || ||| ||||| || | ||||| |||
Sbjct 72200 GGGATACCTTCCTTGTCCTGAATCTTGGCTTTCACATTGTCAATTGTGTCTGAACTTTCA 72141
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || || || ||||| ||||| | ||||| | ||| ||||||||
Sbjct 72140 ACCTCCAGTGTTATAGTTTTTCCAGTAAGCGTTTTCACAAAAATCTGCAT 72091
Score = 87.8 bits (96), Expect = 4e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|||||| | |||||| | || | ||| | ||| | || || || || || || |
Sbjct 73002 ACCACCACGAAGACGGAGGACAAGATGCAGAGTTGATTCCTTCTGTATGTTGTAGTCTGC 72943
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
|| || | |||| || | ||||| ||||||||||| || ||||| || || || ||
Sbjct 72942 CAAAGTCCTGCCATCTTCAAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGG 72883
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
||||| ||||| ||||| || || || ||||| || | ||||| || ||
Sbjct 72882 GATTCCCTCTTTGTCTTGAATCTTTGCCTTCACATTGTCAATGGTGTCTGAGCTCTCCAC 72823
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || ||||| || |||||||| || || | |||||||||||
Sbjct 72822 CTCCAGCGTGATGGTCTTGCCAGTTAAGGTCTTCACGAATATCTGCAT 72775
>seq379
Length=244149
Score = 91.5 bits (100), Expect = 3e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| || || || | || | ||| | || | ||| || |||||||||||||
Sbjct 80276 ATCCCACCCCTCAGGCGCAGAACCAGATGAAGGGTGGACTCCTTCTGGATATTATAATCA 80217
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| || || | | | || |||||||| || |||||||| || | | ||| || || ||
Sbjct 80216 GCCAAGGTCCTTCCGTCGTCCAATTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGA 80157
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || || || || || ||||| || ||||| ||| | || || ||
Sbjct 80156 GGAATACCCTCCTTGTCCTGGATTTTCGCCTTAACATTGTCTATCGTGTCAGAGCTCTCG 80097
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || ||||| || |||||||||| ||||| | || ||||||||
Sbjct 80096 ACCTCAAGGGTAATCGTCTTACCAGTTAGGGTTTTCACGAAAATCTGCAT 80047
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984129731553150
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