Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1057 109 1e-18 seq4991 105 1e-17 seq1034 104 5e-17 seq379 91.5 3e-13 >seq1057 Length=141302 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| ||||| | || | |||| |||| || || || ||||| ||| Sbjct 136722 ATCCCACCTCTGAGACGAAGGACAAGGTGTAGGGTAGATTCCTTCTGAATGTTATAGTCA 136781 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| | |||| || | ||| ||||||||||| || | ||||| || ||||| Sbjct 136782 GCAAGTGTCCTGCCATCCTCAAGTTGCTTACCAGCAAATATCAGCCTCTGCTGGTCAGGA 136841 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || || || ||| ||||| || | ||| || ||| Sbjct 136842 GGGATGCCTTCTTTGTCCTGAATCTTGGCTTTCACATTGTCAATTGTATCAGAGCTTTCA 136901 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| |||||||| ||||| | ||||| | ||| |||||||| Sbjct 136902 ACCTCCAGAGTGATGGTTTTCCCAGTAAGAGTTTTCACAAAAATCTGCAT 136951 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || |||||||| | |||| || | ||| | |||||| ||| || || || Sbjct 136950 ATGCCTCCCCTAAGACGAAGAACTAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCT 137009 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| || |||| || | || |||||||||||||| | |||||||||||||| Sbjct 137010 GCAAGTGTGCGGCCATCCTCTAGCTGCTTACCAGCAAAGATAAGCCTCTGTTGATCAGGA 137069 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || || || ||| |||||| || | || || ||| Sbjct 137070 GGAATCCCCTCCTTGTCCTGAATCTTTGCTTTCACATTATCAATGGTGTCAGAGCTTTCA 137129 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | ||||||| ||| |||||||| Sbjct 137130 ACCTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTAACAAAGATCTGCAT 137179 Score = 96.9 bits (106), Expect = 7e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| || || | | || | | |||| || | ||| |||||||||||||| | || Sbjct 136313 GATATTGTAGTCTGCAAGAGTCCTTCCATCTTCAAGTTGCTTACCAGCAAAGATGATCCT 136372 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 | ||||||| ||| | || || || |||||||| ||||| || |||||| || | Sbjct 136373 CCGTTGATCTGGTAGGATGCCCTCCTTATCTTGGATTTTGGCCTTGACATTATCAATCGT 136432 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 |||||| || || || | || || ||||| ||||| | ||||||| ||| ||||| Sbjct 136433 ATCTGAACTCTCAACCTCCATTGTTATTGTTTTTCCAGTAAGGGTTTTAACAAAAATCTG 136492 Query 192534 CAT 192536 ||| Sbjct 136493 CAT 136495 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| || | ||||| ||||||||||| | || || || || || || || ||||||| Sbjct 136111 CATCCTCAAGCTGTTTTCCAGCAAAGATCAGCCTTTGCTGGTCCGGAGGAATCCCTTCTT 136170 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 | || || ||||| | |||||||| || | |||||| || || || | ||| | Sbjct 136171 TGTCCTGAATTTTGGTCTTTACATTGTCAATGGTATCTGAGCTCTCCACCTCCAAAGTTA 136230 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || ||||| || || || | |||||||||||| Sbjct 136231 TAGTCTTGCCAGTCAAGGTCTTCACAAATATCTGCAT 136267 >seq4991 Length=48504 Score = 105 bits (116), Expect = 1e-17 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 |||||||| | ||||| | || ||||| | || | ||| ||| || || || || || Sbjct 8817 ATACCACCACGCAGACGGAGAACCAAATGAAGGGTTGACTCCTTTTGA-ATGTTGTAGTC 8875 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | | ||| || |||| || | || || ||||||||||| | ||||| ||||| || Sbjct 8876 ACCAAGTGTACGACCATCTTCAAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGG 8935 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || ||||| ||||| || ||||| ||| ||||| || | ||| || ||| Sbjct 8936 TGGGATGCCTTCCTTATCCTGAATTTTGGCTTTGACATTGTCAATGGTATCAGAGCTTTC 8995 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | ||| || ||||| ||||| | |||||| | ||| || |||||| Sbjct 8996 CACCTCCAAAGTGATTGTTTTCCCAGTGAGTGTTTTCACAAAGATTTGCATT 9047 Score = 98.7 bits (108), Expect = 2e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 |||||||| | |||||| | || ||||| | || | ||| ||| || || ||||| || Sbjct 8589 ATACCACCACGAAGACGGAGAACCAAATGAAGGGTCGACTCCTTTTGA-ATGTTATAGTC 8647 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | |||||| | || || | ||||| ||||||||||| | ||||| ||||| || Sbjct 8648 AGCAAGTGTTCGACCGTCCTCGAGCTGTTTCCCAGCAAAGATAAGCCTCTGCTGATCTGG 8707 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || || || || || || ||||| || ||||| || | || || || Sbjct 8708 TGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTGTCAATGGTGTCAGAGCTCTC 8767 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| || ||||| || || | ||| || | ||| |||||||| Sbjct 8768 AACCTCCAGAGTGATAGTTTTGCCCGTGAGTGTCTTGACAAAAATCTGCAT 8818 >seq1034 Length=134858 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || | || | ||||| ||| || ||| || || ||| Sbjct 72548 ATACCACCACGCAGACGGAGAACCAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCA 72489 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || | |||||| ||||||||||| | || || ||||| || Sbjct 72488 GCAAGAGTACGACCATCCTCAAGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGATCTGGA 72429 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || ||||| || ||| ||| ||||| |||| ||||| || Sbjct 72428 GGGATTCCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCGATAGTGTCTGAACTCTCC 72369 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || ||||| || ||||| | || || | ||| |||||||| Sbjct 72368 ACTTCCAAGGTGATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 72319 Score = 100 bits (110), Expect = 6e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||||||||| || | | || || |||| |||| || ||||||||||| || | ||| Sbjct 72045 GATATTATAGTCCGCAAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCT 71986 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| |||||||| || ||||| || || || || || || ||| |||||| |||| Sbjct 71985 CTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGAATCTTTGCTTTCACATTATCAATAGT 71926 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| ||| || || || || ||||| || ||||| | |||||| | || || || Sbjct 71925 GTCTGAGCTTTCAACCTCAAGGGTGATGGTCTTGCCAGTAAGTGTTTTCACGAAGATTTG 71866 Query 192534 CAT 192536 ||| Sbjct 71865 CAT 71863 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||||||||| | || || || | || | || || || || || ||| Sbjct 72320 ATGCCACCTCTAAGACGAAGAACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCA 72261 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | |||| || | ||| || |||||||| || || ||||| |||||||| Sbjct 72260 GCAAGCGTCCTGCCATCCTCAAGTTGCTTGCCAGCAAATATCAACCTCTGCTGATCAGGA 72201 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || || ||| ||||| || | ||||| ||| Sbjct 72200 GGGATACCTTCCTTGTCCTGAATCTTGGCTTTCACATTGTCAATTGTGTCTGAACTTTCA 72141 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || ||||| ||||| | ||||| | ||| |||||||| Sbjct 72140 ACCTCCAGTGTTATAGTTTTTCCAGTAAGCGTTTTCACAAAAATCTGCAT 72091 Score = 87.8 bits (96), Expect = 4e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | |||||| | || | ||| | ||| | || || || || || || | Sbjct 73002 ACCACCACGAAGACGGAGGACAAGATGCAGAGTTGATTCCTTCTGTATGTTGTAGTCTGC 72943 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || | |||| || | ||||| ||||||||||| || ||||| || || || || Sbjct 72942 CAAAGTCCTGCCATCTTCAAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGG 72883 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||| ||||| ||||| || || || ||||| || | ||||| || || Sbjct 72882 GATTCCCTCTTTGTCTTGAATCTTTGCCTTCACATTGTCAATGGTGTCTGAGCTCTCCAC 72823 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || |||||||| || || | ||||||||||| Sbjct 72822 CTCCAGCGTGATGGTCTTGCCAGTTAAGGTCTTCACGAATATCTGCAT 72775 >seq379 Length=244149 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || || || | || | ||| | || | ||| || ||||||||||||| Sbjct 80276 ATCCCACCCCTCAGGCGCAGAACCAGATGAAGGGTGGACTCCTTCTGGATATTATAATCA 80217 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || | | | || |||||||| || |||||||| || | | ||| || || || Sbjct 80216 GCCAAGGTCCTTCCGTCGTCCAATTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGA 80157 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || ||||| || ||||| ||| | || || || Sbjct 80156 GGAATACCCTCCTTGTCCTGGATTTTCGCCTTAACATTGTCTATCGTGTCAGAGCTCTCG 80097 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || |||||||||| ||||| | || |||||||| Sbjct 80096 ACCTCAAGGGTAATCGTCTTACCAGTTAGGGTTTTCACGAAAATCTGCAT 80047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984129731553150