Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq1034 100 5e-16
seq379 100 5e-16
seq1057 95.1 2e-14
>seq1034
Length=134858
Score = 100 bits (110), Expect = 5e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974
|| |||| || |||||||||||||| | |||||| || ||||| || ||||| || ||
Sbjct 72017 TCCTCCAGCTGCTTACCAGCAAAAATAAGTCTCTGCTGATCAGGAGGAATTCCCTCCTTG 71958
Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034
|| || || || ||| |||||| ||||| ||||| ||| || || || || |||
Sbjct 71957 TCCTGAATCTTTGCTTTCACATTATCAATAGTGTCTGAGCTTTCAACCTCAAGGGTGATG 71898
Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || ||||| | |||||| | ||| || |||||
Sbjct 71897 GTCTTGCCAGTAAGTGTTTTCACGAAGATTTGCAT 71863
Score = 95.1 bits (104), Expect = 2e-14
Identities = 165/239 (69%), Gaps = 1/239 (0%)
Strand=Plus/Minus
Query 171831 AGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATA 171890
|| |||| || |||||| | ||| || | || | ||| | ||| | || || ||
Sbjct 73012 AGGTTCAGAA-ACCACCACGAAGACGGAGGACAAGATGCAGAGTTGATTCCTTCTGTATG 72954
Query 171891 TTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGT 171950
|| || |||| |||| | | || || | ||||| |||||||| || || |||||
Sbjct 72953 TTGTAGTCTGCCAAAGTCCTGCCATCTTCAAGCTGTTTTCCAGCAAAGATCAACCTCTGC 72894
Query 171951 TGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCT 172010
||||| || || ||||| ||||| ||||| || || || ||||| || || |||
Sbjct 72893 TGGTCTGGAGGGATTCCCTCTTTGTCTTGAATCTTTGCCTTCACATTGTCAATGGTGTCT 72834
Query 172011 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || || || || || ||||| || |||||||| || || | ||||||||||||
Sbjct 72833 GAGCTCTCCACCTCCAGCGTGATGGTCTTGCCAGTTAAGGTCTTCACGAATATCTGCAT 72775
Score = 86.0 bits (94), Expect = 1e-11
Identities = 159/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| | ||| || | || || || | || | |||||| |||||| ||||||
Sbjct 72776 ATGCCACCACGAAGCCGCAGCACCAAGTGAAGGGTTGACTCTTTCTGAATATTGTAATCT 72717
Query 171900 GATAAAGATCGTTCG-TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958
| || | || | | || || | ||| ||||| ||||| || | ||||||||||| ||
Sbjct 72716 GC-AAGGGTCCTCCCATCTTCAAGTTGCTTACCGGCAAAGATCAGCCTCTGTTGGTCTGG 72658
Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018
||| || || || ||||| || || || || |||||| || |||||||| ||
Sbjct 72657 TGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTC 72598
Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || | ||| || || || ||||| | || || | || ||||||||
Sbjct 72597 AACCTCCAAAGTGATCGTCTTTCCAGTAAGGGTCTTCACAAAAATCTGCAT 72547
>seq379
Length=244149
Score = 100 bits (110), Expect = 5e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| || || || | || | ||| | || | ||| || |||||||||||
Sbjct 80276 ATCCCACCCCTCAGGCGCAGAACCAGATGAAGGGTGGACTCCTTCTGGATATTATAATCA 80217
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| || | | | |||| |||||||| || ||||||||||| | | ||| ||||| ||
Sbjct 80216 GCCAAGGTCCTTCCGTCGTCCAATTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGA 80157
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || || || || || || ||||| || ||||| ||| || || || ||
Sbjct 80156 GGAATACCCTCCTTGTCCTGGATTTTCGCCTTAACATTGTCTATCGTGTCAGAGCTCTCG 80097
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || || ||||| || |||||||||| ||||| | ||| ||||||||
Sbjct 80096 ACCTCAAGGGTAATCGTCTTACCAGTTAGGGTTTTCACGAAAATCTGCAT 80047
>seq1057
Length=141302
Score = 95.1 bits (104), Expect = 2e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974
|| || | ||| ||||||||||| || | ||||| |||||||| || || ||||||||
Sbjct 136797 TCCTCAAGTTGCTTACCAGCAAATATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTG 136856
Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034
|| || || || ||| ||||| || ||||| || ||| || || ||||| |||
Sbjct 136857 TCCTGAATCTTGGCTTTCACATTGTCAATTGTATCAGAGCTTTCAACCTCCAGAGTGATG 136916
Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| ||||| | ||||| | || ||||||||
Sbjct 136917 GTTTTCCCAGTAAGAGTTTTCACAAAAATCTGCAT 136951
Score = 86.0 bits (94), Expect = 1e-11
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| | ||||| | || ||||| | || | || || ||||| || |||
Sbjct 136266 ATCCCACCACGAAGTCAAAGCACCAAATGAAGTGTTGATTCCTTCTGGATATTGTAGTCT 136325
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| | || | | | || || | ||| ||||||||||| || | ||| |||| || |||
Sbjct 136326 GCAAGAGTCCTTCCATCTTCAAGTTGCTTACCAGCAAAGATGATCCTCCGTTGATCTGGT 136385
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
| || || || |||||||| ||||| || |||||| || |||||||| ||
Sbjct 136386 AGGATGCCCTCCTTATCTTGGATTTTGGCCTTGACATTATCAATCGTATCTGAACTCTCA 136445
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || | || || ||||| ||||| | ||||||| || ||||||||
Sbjct 136446 ACCTCCATTGTTATTGTTTTTCCAGTAAGGGTTTTAACAAAAATCTGCAT 136495
Score = 84.2 bits (92), Expect = 4e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983
||||| |||||||| || | || || ||||| || || || |||||||| || || |||
Sbjct 136122 TGTTTTCCAGCAAAGATCAGCCTTTGCTGGTCCGGAGGAATCCCTTCTTTGTCCTGAATT 136181
Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043
|| | |||||||| || |||||||| || || || | ||| || || || |||
Sbjct 136182 TTGGTCTTTACATTGTCAATGGTATCTGAGCTCTCCACCTCCAAAGTTATAGTCTTGCCA 136241
Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069
|| || || || | |||||||||||
Sbjct 136242 GTCAAGGTCTTCACAAATATCTGCAT 136267
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904821815980200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |