Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1034 100 5e-16 seq379 100 5e-16 seq1057 95.1 2e-14 >seq1034 Length=134858 Score = 100 bits (110), Expect = 5e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| || |||||||||||||| | |||||| || ||||| || ||||| || || Sbjct 72017 TCCTCCAGCTGCTTACCAGCAAAAATAAGTCTCTGCTGATCAGGAGGAATTCCCTCCTTG 71958 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || || ||| |||||| ||||| ||||| ||| || || || || ||| Sbjct 71957 TCCTGAATCTTTGCTTTCACATTATCAATAGTGTCTGAGCTTTCAACCTCAAGGGTGATG 71898 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| | |||||| | ||| || ||||| Sbjct 71897 GTCTTGCCAGTAAGTGTTTTCACGAAGATTTGCAT 71863 Score = 95.1 bits (104), Expect = 2e-14 Identities = 165/239 (69%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 171831 AGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATA 171890 || |||| || |||||| | ||| || | || | ||| | ||| | || || || Sbjct 73012 AGGTTCAGAA-ACCACCACGAAGACGGAGGACAAGATGCAGAGTTGATTCCTTCTGTATG 72954 Query 171891 TTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGT 171950 || || |||| |||| | | || || | ||||| |||||||| || || ||||| Sbjct 72953 TTGTAGTCTGCCAAAGTCCTGCCATCTTCAAGCTGTTTTCCAGCAAAGATCAACCTCTGC 72894 Query 171951 TGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCT 172010 ||||| || || ||||| ||||| ||||| || || || ||||| || || ||| Sbjct 72893 TGGTCTGGAGGGATTCCCTCTTTGTCTTGAATCTTTGCCTTCACATTGTCAATGGTGTCT 72834 Query 172011 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || ||||| || |||||||| || || | |||||||||||| Sbjct 72833 GAGCTCTCCACCTCCAGCGTGATGGTCTTGCCAGTTAAGGTCTTCACGAATATCTGCAT 72775 Score = 86.0 bits (94), Expect = 1e-11 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || || || | || | |||||| |||||| |||||| Sbjct 72776 ATGCCACCACGAAGCCGCAGCACCAAGTGAAGGGTTGACTCTTTCTGAATATTGTAATCT 72717 Query 171900 GATAAAGATCGTTCG-TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | || | || | | || || | ||| ||||| ||||| || | ||||||||||| || Sbjct 72716 GC-AAGGGTCCTCCCATCTTCAAGTTGCTTACCGGCAAAGATCAGCCTCTGTTGGTCTGG 72658 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| || || || ||||| || || || || |||||| || |||||||| || Sbjct 72657 TGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTC 72598 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| || || || ||||| | || || | || |||||||| Sbjct 72597 AACCTCCAAAGTGATCGTCTTTCCAGTAAGGGTCTTCACAAAAATCTGCAT 72547 >seq379 Length=244149 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| || || || | || | ||| | || | ||| || ||||||||||| Sbjct 80276 ATCCCACCCCTCAGGCGCAGAACCAGATGAAGGGTGGACTCCTTCTGGATATTATAATCA 80217 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | | | |||| |||||||| || ||||||||||| | | ||| ||||| || Sbjct 80216 GCCAAGGTCCTTCCGTCGTCCAATTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGA 80157 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || ||||| || ||||| ||| || || || || Sbjct 80156 GGAATACCCTCCTTGTCCTGGATTTTCGCCTTAACATTGTCTATCGTGTCAGAGCTCTCG 80097 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||| || |||||||||| ||||| | ||| |||||||| Sbjct 80096 ACCTCAAGGGTAATCGTCTTACCAGTTAGGGTTTTCACGAAAATCTGCAT 80047 >seq1057 Length=141302 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | ||| ||||||||||| || | ||||| |||||||| || || |||||||| Sbjct 136797 TCCTCAAGTTGCTTACCAGCAAATATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTG 136856 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || || ||| ||||| || ||||| || ||| || || ||||| ||| Sbjct 136857 TCCTGAATCTTGGCTTTCACATTGTCAATTGTATCAGAGCTTTCAACCTCCAGAGTGATG 136916 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| | ||||| | || |||||||| Sbjct 136917 GTTTTCCCAGTAAGAGTTTTCACAAAAATCTGCAT 136951 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||||| | || ||||| | || | || || ||||| || ||| Sbjct 136266 ATCCCACCACGAAGTCAAAGCACCAAATGAAGTGTTGATTCCTTCTGGATATTGTAGTCT 136325 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | | | || || | ||| ||||||||||| || | ||| |||| || ||| Sbjct 136326 GCAAGAGTCCTTCCATCTTCAAGTTGCTTACCAGCAAAGATGATCCTCCGTTGATCTGGT 136385 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 | || || || |||||||| ||||| || |||||| || |||||||| || Sbjct 136386 AGGATGCCCTCCTTATCTTGGATTTTGGCCTTGACATTATCAATCGTATCTGAACTCTCA 136445 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || || ||||| ||||| | ||||||| || |||||||| Sbjct 136446 ACCTCCATTGTTATTGTTTTTCCAGTAAGGGTTTTAACAAAAATCTGCAT 136495 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||| |||||||| || | || || ||||| || || || |||||||| || || ||| Sbjct 136122 TGTTTTCCAGCAAAGATCAGCCTTTGCTGGTCCGGAGGAATCCCTTCTTTGTCCTGAATT 136181 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || | |||||||| || |||||||| || || || | ||| || || || ||| Sbjct 136182 TTGGTCTTTACATTGTCAATGGTATCTGAGCTCTCCACCTCCAAAGTTATAGTCTTGCCA 136241 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || || || || | ||||||||||| Sbjct 136242 GTCAAGGTCTTCACAAATATCTGCAT 136267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904821815980200