Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq251 116 1e-20 seq135 109 2e-18 seq149 105 2e-17 seq33 98.7 3e-15 seq7 96.9 1e-14 seq728 95.1 4e-14 seq94 86.0 2e-11 >seq251 Length=297614 Score = 116 bits (128), Expect = 1e-20 Identities = 321/485 (66%), Gaps = 18/485 (4%) Strand=Plus/Minus Query 288874 AATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTT 288933 || || | ||| || || || || ||||| ||||| || | |||| ||| | | Sbjct 249873 AAGGCAGAGTCCAAAATGTCTGCCCTGTTAGTTGCCGCAATGACAATGATACCAGTGTTA 249814 Query 288934 TGCTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTT 288993 || ||| |||||||| ||| |||| || ||||| || || || |||||||||||| Sbjct 249813 CCCTCAAAGCCATCCATTTCTGTCAAAAGCTGGTTAAGAGTCTGCTCTCTTTCATCATTT 249754 Query 288994 GAACCTCTTGAATCACCCGAATC-GCTCCtttttt--tACCAACAGCATCAATTTCGTCA 289050 |||| |||| | | | |||| | | | ||||| ||||||||||| || Sbjct 249753 ---CCTC------CACCAATACCAGTTCCTCTCTGCCTTCCAACGGCATCAATTTCATCC 249703 Query 289051 ATGAAAATCACACACGGAGAATTTTGTCTCGCAAT--TGCAAATAATTCTCTTACACGGG 289108 | || | | || |||| ||| | | || | || ||| | || | || || | Sbjct 249702 ACAAATACAATGCAGGGAGCATTCTCCTTGGCCTTCTTGAAAAGA--TCACGGACTCGAG 249645 Query 289109 ATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTT 289167 | || |||| |||||| |||| || |||||||||||| | || | | || | || | Sbjct 249644 AGGCACCAACTCCAACAAACATCTCAACAAATTCAGAACCTGAGA-TGGAGAAAAAAGGC 249586 Query 289168 ACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCC 289227 ||| ||||| ||||| | ||| | || ||||| ||||| ||||| ||||| || || Sbjct 249585 ACACCAGCTTCACCTGCAATTGCTTTAGCTAGAAGAGTCTTTCCTGTGCCAGGGGGGCCA 249526 Query 289228 TCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTT 289287 | || || ||||| || | ||| ||| ||| | || ||||||| ||||| Sbjct 249525 ATAAGGAGGACACCCTTAGGGATGCGTGCACCAACAGCAGTGAATCTCTCAGGTTTCTTT 249466 Query 289288 AAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCA 289347 | ||||| |||| |||| || || | ||||| ||||| ||| || |||||| || Sbjct 249465 AGGAATTCAACAACTTCCATAAAATCTTGCTTTGCTTCATCGACTCCAGCAACATCATCA 249406 Query 289348 AAAGT 289352 || || Sbjct 249405 AATGT 249401 >seq135 Length=369280 Score = 109 bits (120), Expect = 2e-18 Identities = 223/327 (68%), Gaps = 6/327 (2%) Strand=Plus/Plus Query 289020 CCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCT 289079 |||| | |||||| || |||||||| ||||| ||||| | || ||||| || || Sbjct 149654 CCTTGCTCTACCAATTGCGTCAATTTCATCAATAAAAATTATACTAGGAGAGCACTGCCT 149713 Query 289080 CGCAATTGCA--AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACA 289137 || || | || || | ||| || | |||| ||||| ||||||| |||| || | | Sbjct 149714 TGC--TTCCTGGAACAAGTTTCTCACCCTTGATGGTCCAACACCAACAAACATCTCCATA 149771 Query 289138 AATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGC 289196 || || ||| | |||| | || | ||| | |||| | || || ||| ||| | || Sbjct 149772 AAATCTGAACCCGATA-TAGACAAGAAAGGTACACCAGACTCCCCAGCTGTTGCTTTTGC 149830 Query 289197 CAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC 289256 || || ||||| ||||||||||| || || | || | | | || || || | |||||| Sbjct 149831 TAGGAGAGTCTTCCCTGTTCCAGGAGGACCAACCAACAAAGCACCTTTGGGAATTTTTGC 149890 Query 289257 CCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATA 289316 || || ||||||| ||| |||| | ||| | || | |||| | || | Sbjct 149891 ACCTAGTTCCTCGTATTTCTTTGGGTTCTTGAGAAAGTGCACGAATTCCATGATCTCTTG 149950 Query 289317 TTTTGCCTCATCACATCCTGCTACATC 289343 |||||||||||||||||| || ||||| Sbjct 149951 TTTTGCCTCATCACATCCAGCAACATC 149977 >seq149 Length=554269 Score = 105 bits (116), Expect = 2e-17 Identities = 283/424 (67%), Gaps = 24/424 (6%) Strand=Plus/Plus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| |||||||| || || | || || |||||||| ||||| |||||||| | Sbjct 82262 TAAAACCATCCATTTCCGTCAACAACTGGTTCAGTGTTTGCTCCCTCTCATCATTC---C 82318 Query 288998 CTCTTGAATCACCCGAATCGC---TCCtttttt--tACCAACAGCATCAATTTCGTCAAT 289052 ||| |||| |||| | |||| | | | || ||||||||||| || ||||| Sbjct 82319 CTC------CACC--AATCCCAGTTCCTCTCTGCCTGCCTACAGCATCAATCTCATCAAT 82370 Query 289053 GAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGC 289112 ||||| || || || ||||| |||| | || || || || || | || || Sbjct 82371 GAAAACCAAGCAGGGGGAATTGGCCTTCGCCTTGTTGAACAAGTCCCTCACTCTTGAAGC 82430 Query 289113 TCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATA-CTTGAATGAATGTTACAT 289171 |||| |||||| |||| |||| ||||| || | | | | ||| ||||| || Sbjct 82431 CCCAACGCCAACAAACATCTCTATGAATTCTGATCCTGCAAGCGAGAA-GAATGGAACTC 82489 Query 289172 TTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTA 289231 ||||| ||||| | ||| | |||||||| || || || ||||||||||| || | | Sbjct 82490 CGGCTTCTCCTGCAATGGCCTTTGCCAGAAGCGTTTTCCCGGTTCCAGGTGGCCCGACCA 82549 Query 289232 ATAGAACTCCCTTTGGTACTTTTGCCC---CAGCAGACTTATATTTCTCAGGGCTCTTTA 289288 | || || || || || | ||| || | |||||| | | ||||| || |||| | Sbjct 82550 AGAGCACCCCTTTAGGGATTTTGGCACCGACAGCAG-CGAACTTTTCT--GGTGTCTTCA 82606 Query 289289 AAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAA 289348 | || || || || || | | || | || || |||||| ||| ||||| ||| ||| Sbjct 82607 AGAACTCAACGATCTCTTGGAAATCTTGCTTGGCTTCATCAACTCCAGCTACGTCATCAA 82666 Query 289349 AAGT 289352 |||| Sbjct 82667 AAGT 82670 >seq33 Length=615807 Score = 98.7 bits (108), Expect = 3e-15 Identities = 220/325 (68%), Gaps = 4/325 (1%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 || |||||||| || || |||||||| | | || |||| ||| | |||| | | Sbjct 34719 CCCACAGCATCTATCTCATCAATGAACACTATGCAAGGAGCCTTTGATTTCGCCTTATCG 34778 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || || || || || | || || |||| || || ||| || ||||| || |||||| Sbjct 34779 AACAAGTCCCTCACTCTTGAAGCACCAACTCCCACGAACAGCTCCACAAACTCGGAAGCG 34838 Query 289150 GATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 | || || | |||| || ||||| || || || || ||||||| ||| ||||| Sbjct 34839 GC-ACAAGAGAAAAATGGCACCCCAGCTTCTCCAGCCACAGCTCTCGCCAAAAGAGTCTT 34897 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 || || ||||| || ||| | || | | ||| ||||| | ||| || || | | | Sbjct 34898 GCCAGTACCAGGAGGACCCACCAACAAACATCCTTTTGGAATTTTAGCTCCTAATGCCGT 34957 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCT-CAAGTTCATATTTTGCCTCAT 289327 |||||| || ||| |||| || || || || | ||| | ||| | || ||| |||| | Sbjct 34958 ATATTTATCTGGGTTCTTCAAGAAGTCGACCACTTCTTGCAACTCCAG-TTTCGCCTGGT 35016 Query 289328 CACATCCTGCTACATCAGCAAAAGT 289352 | ||| || ||||||||||| || Sbjct 35017 CCGCTCCAGCAACATCAGCAAACGT 35041 >seq7 Length=809814 Score = 96.9 bits (106), Expect = 1e-14 Identities = 214/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| ||||||| ||| |||||||| | | || || | | | || || | | Sbjct 238059 CCAATTGCATCAACTTCATCAATGAATACAATACTAGGTGCACACCGCCTTGCCTCTTGA 238000 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 ||||| || || | |||| |||| ||||||| |||| || | ||| ||||| | Sbjct 237999 AATAAGCTCCTGACCCTTGATGGACCAACACCAACAAACATCTCCATAAAATCAGATCCA 237940 Query 289150 GATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || | | || | ||| | |||| | ||| ||||| ||| |||| ||||||||||| Sbjct 237939 GACA-TAGAGAGGAAAGGCACATCAGATTCACCTGCAGTTGCTTTCGCGAGAAGTGTCTT 237881 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACT 289267 ||||| ||||| || ||| | | || | || || || | ||| || |||| | || Sbjct 237880 CCCTGTGCCAGGAGGGCCCACAAGAAGCGCACCTTTAGGAATTTTGGCTCCCAACTC-CT 237822 Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327 ||| |||| ||| |||| | || | |||| |||| | ||| | ||||||||||| Sbjct 237821 CATACTTCTTTGGGTTCTTAAGGAAGTGCACAAATTCCATTATTTCCTGTTTTGCCTCAT 237762 Query 289328 CACATCCTGCTACATC 289343 |||| || ||||| || Sbjct 237761 CACAGCCAGCTACGTC 237746 >seq728 Length=387020 Score = 95.1 bits (104), Expect = 4e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||| ||||| || ||||| ||||| | ||| |||||| | ||| |||| | | Sbjct 375134 ACAAACATGTACCCTGTATGCATCGCTTTGGTCGAATAGCCTCTCTTTGAGGAAGTGTGC 375193 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||||| || | |||||||||||| ||||||||||| || || || || |||||||| || Sbjct 375194 AGCACCATGAGCAATCATACAATCTCGCTCCATTTCTCCAAAGCGGAGGCCACCATCACG 375253 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 || | || || |||||||| | || ||| | || ||| || | || ||| Sbjct 375254 AGATCGCCCTTCTGCAGGCTGTCTTGTTAGAATTTGCACAGGGCCTCTCCCACGTGAATG 375313 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 ||| |||| ||||| || || || | ||||||| ||| || || | ||| || Sbjct 375314 GATCTTGTCATCGACCATGTGTTTCAGTCTCTGGTAGTATGTAGGCCCAAGGAATAT 375370 >seq94 Length=420873 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/135 (76%), Gaps = 5/135 (4%) Strand=Plus/Plus Query 301827 ACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATT 301886 ||| ||||| ||| |||| || || ||| || || |||| ||| |||| |||||||| Sbjct 396014 ACGAGGAACCCCAAGGGTCACATTCT--TTGCACTCA-CACCGGCATAGTGAAAAGTATT 396070 Query 301887 CAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAA-TCATACCAACCATTT 301945 |||||| | || |||| ||||||||||| ||||| |||| ||| |||| ||| | Sbjct 396071 CAGAGTCATCTGTGTAGCAGGCTCACCAATGGACTGTGCAGCAACACAT-CCAATCATCT 396129 Query 301946 CTCCTGGTGCTACAA 301960 |||||||||| |||| Sbjct 396130 CTCCTGGTGCAACAA 396144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471293941556153