Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_021530.1
Length=171407
Score E
Sequences producing significant alignments: (Bits) Value
seq752 316 2e-81
seq1263 269 3e-67
seq2510 123 3e-23
seq587 105 7e-18
seq5090 87.8 2e-12
>seq752
Length=193215
Score = 316 bits (350), Expect = 2e-81
Identities = 474/668 (71%), Gaps = 4/668 (1%)
Strand=Plus/Minus
Query 159371 TGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGGTACAC 159430
||| ||| | || | || || ||| |||| || ||| | ||||| || ||||| ||
Sbjct 189601 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 189542
Query 159431 CCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTCACAGCAGCTGTCTCGA 159489
|| || | |||||||||||| | || || ||| || || | || || || || ||||
Sbjct 189541 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTTCGA 189483
Query 159490 CGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGA 159549
| ||||| | | | | ||||| | | |||| || |||||||| | || ||
Sbjct 189482 CTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGAAGCCCAAGGAG 189423
Query 159550 ATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGTGCCT 159609
|||| || ||||||||| | || || | |||| ||||| || |||||||| | |
Sbjct 189422 ATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCACTT 189363
Query 159610 TCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATTGGTATCCGT 159668
||| ||||| ||||| ||| | ||||| ||||||| || || ||| | | | ||
Sbjct 189362 TCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGTTCAAT-TGCGA 189304
Query 159669 CCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTCATC 159728
||||| ||||| || || ||||||| ||| |||||||||||||| || ||||| ||
Sbjct 189303 CCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATT 189244
Query 159729 TACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTT 159788
|| ||| | |||||||| ||||||| || || || ||||| || || || || |||
Sbjct 189243 TATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTT 189184
Query 159789 AGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATG 159848
||||| | | || | ||||| ||||| || ||||| || || || || |||||||||
Sbjct 189183 CGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATG 189124
Query 159849 GGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAG 159908
|||||||| ||| || | || | || || || | || |||||||| | |||||||||
Sbjct 189123 GGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGTAGAA 189064
Query 159909 AACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAACTCAA 159968
|| || | | ||||||||| || |||||||| || |||||| | |||| |||
Sbjct 189063 AATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACCCAA 189004
Query 159969 GAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATT 160028
| || || ||||| || |||||||| || |||||||| ||||| || ||||| || ||
Sbjct 189003 GCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTT 188944
Query 160029 GCGTTTTC 160036
|| |||||
Sbjct 188943 GCTTTTTC 188936
>seq1263
Length=120960
Score = 269 bits (298), Expect = 3e-67
Identities = 410/579 (71%), Gaps = 4/579 (1%)
Strand=Plus/Plus
Query 159371 TGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGGTACAC 159430
||| ||| | || | || || ||| |||| || ||| | ||||| || ||||| ||
Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865
Query 159431 CCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTCACAGCAGCTGTCTCGA 159489
|| || | |||||||||||| | || || ||| || || | || || || || ||||
Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTTCGA 54924
Query 159490 CGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGA 159549
| ||||| | | | | ||||| | | |||| ||||||||||| | || ||
Sbjct 54925 CTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGAG 54984
Query 159550 ATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGTGCCT 159609
|||| || ||||||||| | || || | |||| ||||| || |||||||| || |
Sbjct 54985 ATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCTT 55044
Query 159610 TCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATTGGTATCCGT 159668
||| ||||| ||||| ||| | ||||| |||||||| || || ||| | | | ||
Sbjct 55045 TCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCGA 55103
Query 159669 CCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTCATC 159728
||||| ||||| || || ||||||| ||| |||||||||||||| || ||||| ||
Sbjct 55104 CCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATT 55163
Query 159729 TACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTT 159788
|| ||| | |||||||| ||||||| || || || ||||| || || || || |||
Sbjct 55164 TATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTT 55223
Query 159789 AGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATG 159848
||||| | | || | ||||| ||||| || ||||| || || || || |||||||||
Sbjct 55224 CGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATG 55283
Query 159849 GGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAG 159908
|||||||| ||| || | || | || || || | || |||||||| | || ||||||
Sbjct 55284 GGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGAA 55343
Query 159909 AACACACTGTATGAAGATGGAGAACAAGCAAATACCTTT 159947
|| || | | ||||||||| || |||||||| |||
Sbjct 55344 AATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382
>seq2510
Length=74850
Score = 123 bits (136), Expect = 3e-23
Identities = 131/173 (76%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 160113 GGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAGCAGAA 160172
|| || ||||| || || || || || || ||| | || || ||| | ||||| |||
Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941
Query 160173 GATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACGAAGGACTACGTGCA 160232
||||| ||||||||||| |||||||||||||| || || || |||||||| | |||||
Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881
Query 160233 TGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGT 160285
||| |||| || ||||| || ||||||||| |||| ||||| || || ||
Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGT 56828
>seq587
Length=401750
Score = 105 bits (116), Expect = 7e-18
Identities = 121/163 (74%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 158404 CACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGG 158463
||| ||||| |||||||| || |||||||| |||||||| || | ||||| |||| ||
Sbjct 44408 CACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGG 44467
Query 158464 TCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTAT 158523
|||||| | || || | || ||| | | || | | | |||||||||||||||||
Sbjct 44468 TCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAGTTAT 44527
Query 158524 GCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCT 158566
|||||| | ||| | || ||||| || | ||||| ||||||
Sbjct 44528 GCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570
>seq5090
Length=30266
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/135 (75%), Gaps = 7/135 (5%)
Strand=Plus/Plus
Query 157917 GTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTG 157976
|||||||||||||| | |||||| ||||||| ||| |||||| ||| |||||||| |
Sbjct 12997 GTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCACCCTTGGATCACTGTTGCATATTCAG 13056
Query 157977 CTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCT 158036
|||| || |||||| || || ||| | ||||||| | |||||||| || |
Sbjct 13057 CTCCTGT---TGCAGC----GCCGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTT 13109
Query 158037 CCGATGCTATGCCTC 158051
| |||| ||||||||
Sbjct 13110 CTGATGGTATGCCTC 13124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548184052391080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |