Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_021536.1
Length=171797
Score E
Sequences producing significant alignments: (Bits) Value
seq752 349 4e-91
seq1263 302 5e-77
seq2510 138 1e-27
seq37 102 9e-17
seq587 89.7 6e-13
>seq752
Length=193215
Score = 349 bits (386), Expect = 4e-91
Identities = 488/678 (72%), Gaps = 6/678 (1%)
Strand=Plus/Minus
Query 152425 CTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACG 152484
|| ||||| ||| ||| | ||| | || || ||| |||| || || || || | ||
Sbjct 189612 CTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACT 189553
Query 152485 AGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGC-GCAAACTTTCTTA-CTG 152542
||||||||||| || ||||| ||||||||| |||| || |||| ||||||| | |
Sbjct 189552 TCATGGTATACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCG 189495
Query 152543 CGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTG 152602
| |||||||| ||||| || || | | | ||||| | || | || || |||||||
Sbjct 189494 CCGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTG 189435
Query 152603 AGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTTGTGGCGC 152662
| || ||||| ||||| | ||| || | || || || ||| | ||||| || |
Sbjct 189434 AAGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTC 189375
Query 152663 TCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCACG-TCTC 152721
||||||| |||||| ||||| ||||| ||| | || || ||||||| || || |||
Sbjct 189374 TCCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTG 189315
Query 152722 ATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGC 152781
|| | | || || || ||||| || || ||||||| ||| || ||||||||||||
Sbjct 189314 TTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCT 189256
Query 152782 GTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTC 152841
|| || || || || || || ||||| || ||||||| || || || ||| || ||
Sbjct 189255 GTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTA 189196
Query 152842 GCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAATCCG 152901
|| || || || |||||| | || || | ||||| || || || ||||||||||| ||
Sbjct 189195 GCGGCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCA 189136
Query 152902 TTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCATGGT 152961
|||||||||||||| ||||| ||| | ||||| | ||| |||| | || || ||||||
Sbjct 189135 TTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGT 189076
Query 152962 GTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCAAAGCTTTC 153021
| ||| ||||| |||||||| | | |||||||||| ||||| || ||| || ||
Sbjct 189075 GCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTT 189016
Query 153022 GACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAG 153081
|| || |||| ||||| || ||||| ||||| || |||||||| || ||||||||
Sbjct 189015 AACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAA 188956
Query 153082 ATATTTGGAATTGCTTTT 153099
|| ||||| ||||||||
Sbjct 188955 ATCTTTGGGGTTGCTTTT 188938
>seq1263
Length=120960
Score = 302 bits (334), Expect = 5e-77
Identities = 409/564 (73%), Gaps = 6/564 (1%)
Strand=Plus/Plus
Query 152436 TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGGTATAC 152495
||| ||| | ||| | || || ||| |||| || || || || | || ||||||||
Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865
Query 152496 TCACGGGTTGGCAAGTTCCTATCTGGAGGGC-GCAAACTTTCTTA-CTGCGGCAGTTTCT 152553
||| || ||||| ||||||||| |||| || |||| ||||||| | || ||||||||
Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 54923
Query 152554 ACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGG 152613
||||| || || | | | ||||| | || | || ||||||||||| || |||||
Sbjct 54924 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGA 54983
Query 152614 GATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCT 152673
||||| | ||| || | || || || ||| | ||||| || |||||||| |||
Sbjct 54984 GATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCT 55043
Query 152674 TTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCACG-TCTCATCGGTATCCG 152732
|||| ||||| ||||| ||| | || || |||||||| || || ||| || | | ||
Sbjct 55044 TTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCG 55102
Query 152733 TCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCAT 152792
|| || ||||| || || ||||||| ||| || |||||||||||| || || || ||
Sbjct 55103 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 55162
Query 152793 CTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTT 152852
|| || || ||||| || ||||||| || || || ||| || || || || || ||
Sbjct 55163 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 55222
Query 152853 CCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAATCCGTTTCATATGAT 152912
|||||| | || || | ||||| || || || ||||||||||| || |||||||||||
Sbjct 55223 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 55282
Query 152913 GGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGA 152972
||| ||||| ||| | ||||| | ||| |||| | || || ||||||| || |||||
Sbjct 55283 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGA 55342
Query 152973 GAATACTTTGTATCAAGATGGTGA 152996
|||||||| | | ||||||||||
Sbjct 55343 AAATACTTTATTTGAAGATGGTGA 55366
>seq2510
Length=74850
Score = 138 bits (152), Expect = 1e-27
Identities = 144/189 (76%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 153178 GGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAA 153237
||||| ||||| || || || || || || || | || || |||||| | || | |||
Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941
Query 153238 GATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCT 153297
||||||||||||||||| ||||| || || ||||| ||||| ||||||||| ||||||||
Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881
Query 153298 TGGTTGGCACCTGTTGACCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCA 153357
||| |||| || || || |||||||| ||| | | |||||||| ||||| | ||
Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 56821
Query 153358 CGAGGCAAC 153366
|| || |||
Sbjct 56820 CGTGGAAAC 56812
>seq37
Length=530226
Score = 102 bits (112), Expect = 9e-17
Identities = 159/226 (70%), Gaps = 1/226 (0%)
Strand=Plus/Plus
Query 153028 ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTT 153087
|| |||| | ||| || ||||| ||||| || |||||||| || |||||||| || |||
Sbjct 49863 ACCCAAGTTGGAGAAACTTATTCAATGGTCACCGCTAACCGCTT-TGGTCCCAAATCTTT 49921
Query 153088 GGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATG 153147
|| || |||| ||||||| | ||| | ||||| |||||| ||||||| || |
Sbjct 49922 GGGGTTTTTTTTTCCAATAAATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACC 49981
Query 153148 GGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGAT 153207
||| | |||| || | || | | ||||| ||| | || || || | || |
Sbjct 49982 GGTTTATGGATGAGAGCTCCTAGAGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGC 50041
Query 153208 TTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGA 153253
|| || || ||||||||| | || | ||||||||||||||| |||
Sbjct 50042 TTCGTTTCCCAAGAAATCTGTGCAGCGGAAGATCCTGAATTTAAGA 50087
>seq587
Length=401750
Score = 89.7 bits (98), Expect = 6e-13
Identities = 120/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 151659 TCAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTC 151718
||||||| ||||| |||||||| || |||||||| |||||||| || | | ||| |||
Sbjct 44404 TCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTC 44463
Query 151719 AGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAG 151778
| || || | || || | || || || | || | || || ||||||||||
Sbjct 44464 AAGGTCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAG 44523
Query 151779 TTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCT 151825
||||||| || | |||| |||| ||||| || | ||||| ||||||
Sbjct 44524 TTATGCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 549431619194680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |