Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq1263 150 2e-31 seq752 147 3e-30 >seq1263 Length=120960 Score = 150 bits (166), Expect = 2e-31 Identities = 368/558 (66%), Gaps = 0/558 (0%) Strand=Plus/Plus Query 73438 TTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGGTA 73497 |||||| || | || | || || ||||| ||| || || || || || |||||||| Sbjct 54803 TTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTA 54862 Query 73498 CACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTAACTGCAGCAGTATC 73557 || ||||| | || || ||| | || ||| ||||| ||||| || ||||| || Sbjct 54863 TACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAATTTCTTAACCGCCGCAGTTTC 54922 Query 73558 AACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGACCAGAGGCACAAGG 73617 || |||| || | | | ||| | ||||| || ||||| || || || ||||| Sbjct 54923 GACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGG 54982 Query 73618 AGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACATGGAGT 73677 |||| | || |||| ||||| || || || |||| ||||| || | || || | Sbjct 54983 AGATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGC 55042 Query 73678 CTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGATACG 73737 || ||||| |||||||| ||| | | || ||||| |||| | |||| | || Sbjct 55043 TTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATTGCG 55102 Query 73738 TCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACGAGCATCTTTCTAAT 73797 ||||| || ||| | || || || || || || || || | || || || Sbjct 55103 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 55162 Query 73798 ATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCAGCAATCTT 73857 ||||| |||| ||| | |||||||||| || || || ||||| || || || || Sbjct 55163 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 55222 Query 73858 TCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCATATGAT 73917 ||| | || | || | || || || || ||| || | || |||||||||||||| Sbjct 55223 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 55282 Query 73918 GGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAACAGTACA 73977 ||| || || ||| || | || | || | ||||| || || |||||||| | ||| | Sbjct 55283 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGA 55342 Query 73978 GAACACATTGTATGAAGA 73995 || || || | |||||| Sbjct 55343 AAATACTTTATTTGAAGA 55360 >seq752 Length=193215 Score = 147 bits (162), Expect = 3e-30 Identities = 372/566 (66%), Gaps = 0/566 (0%) Strand=Plus/Minus Query 73430 CTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACC 73489 || || |||||||| || | || | || || ||||| ||| || || || || || Sbjct 189612 CTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACT 189553 Query 73490 TCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTAACTGCA 73549 |||||||| || ||||| | || || ||| | || ||| ||||| ||||| || Sbjct 189552 TCATGGTATACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAATTTCTTAACCGCC 189493 Query 73550 GCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGACCAGAG 73609 ||||| || || |||| || | | | ||| | ||||| || || || || || Sbjct 189492 GCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGAA 189433 Query 73610 GCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTA 73669 || ||||||||| | || |||| ||||| || || || |||| ||||| || | Sbjct 189432 GCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTC 189373 Query 73670 CATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTT 73729 || || || ||||| |||||||| ||| | | || |||| |||| | |||| Sbjct 189372 CACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGTT 189313 Query 73730 GGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACGAGCATC 73789 | || ||||| || ||| | || || || || || || || || | Sbjct 189312 CAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTA 189253 Query 73790 TTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCA 73849 || || || ||||| |||| ||| | |||||||||| || || || ||||| || Sbjct 189252 TTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCG 189193 Query 73850 GCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTT 73909 || || ||||| | || | || | || || || || ||| || | || |||||| Sbjct 189192 GCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTT 189133 Query 73910 CATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCA 73969 ||||||||||| || || ||| || | || | || | ||||| || || |||||||| Sbjct 189132 CATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCT 189073 Query 73970 ACAGTACAGAACACATTGTATGAAGA 73995 || ||| | || || || | |||||| Sbjct 189072 ACTGTAGAAAATACTTTATTTGAAGA 189047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572674748412520