Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq318 241 2e-57 seq715 233 2e-55 seq2451 132 6e-25 seq7066 114 2e-19 >seq318 Length=266665 Score = 241 bits (266), Expect = 2e-57 Identities = 232/295 (79%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| |||||||| ||||||||||||||||| || ||||| | | || || || ||| Sbjct 56180 GAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGGCTCGGGCTTCCGCGACCTGG 56239 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||| || | || ||||||||| ||||| |||||| ||||||||| Sbjct 56240 ACCTCCTTCATGAAGCGAGCAGCAAGGTTCTCGAGGACGATTCCGTCGGAGGCGGCGAAG 56299 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 ||||| |||||||| ||||||| ||||||||| | ||| |||| || |||||||| | Sbjct 56300 AAAGCGAGGACGTGGGTGATAAAATGGCGCTCGCCATCGGTGAGGGAGTCCCAGTGGCGG 56359 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||| | |||||| |||||||| || ||||||| |||||||| ||||| |||||| Sbjct 56360 AGGTCCTGGGAGAGGTCGACCTCCTCAGCAGTCCAGAAGGAGGCCTCAGCCTTCTTGTAC 56419 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTTG 869926 |||||||| | ||| |||| |||| ||||| | ||| ||||||| |||||| Sbjct 56420 ATCTCCCAGATTTGGGGGTACTGGATCGGGAACA-TACAGAAGCGGTCTGGGTTG 56473 Score = 174 bits (192), Expect = 2e-37 Identities = 203/273 (74%), Gaps = 6/273 (2%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| || ||||| |||||| |||| || || ||||| || |||||||| Sbjct 55900 ACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGTCAGTCCCGGCATTAGCCCGCGCTT 55959 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||| ||||| || || ||||||||||| || ||||| || || ||||||||| || || Sbjct 55960 CTTCAGCCAGAATATCGCGCAGAAACTCCCGGAGAAGAAAATCCCCTCGACGCAAGCGAA 56019 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 |||| ||||||||||| ||| | ||| | || || ||||||||| | ||||| Sbjct 56020 CGCGATCAGCCGCTCGGCGAAGCTCTCG-GCACCGCC-----GATCCACTTGAGAGCCCA 56073 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 || ||||| ||| |||| | |||||| |||||||||| | ||||| | || ||| || Sbjct 56074 ATCCGCCTTCTTCTTCACGCAGGGCACCATGTCGATGGCATGGAAGAGTTTGTTCTTCTC 56133 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 | | |||||||| |||||| |||| ||||| Sbjct 56134 ATCGGAGTCCTTGATATAGGTCTCGAGGAGGAG 56166 Score = 150 bits (166), Expect = 2e-30 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||||||||| || | |||||| || |||||||| |||| ||||||||| Sbjct 55586 GCCTTCTGGTACTCGCCGACCCTTTTCTCGAAGAAATTGGTCTTCCCCTGAAGCGAGATC 55645 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||||||| |||||||||| | ||| ||| |||| ||||||| | | Sbjct 55646 AGCTCCATCCAGTCAAACGGGTTGGCCACACCGTATATCTTCCCGCAGCCGAGCGCCCCC 55705 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 |||| ||| || || || |||||||||||||||| ||| ||| || |||||||||| | Sbjct 55706 AGCAAGCGATCTGCCACGAACTCGATGTACTGGCTCATAAGGTCGCCGTTCATGCCCACC 55765 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923 | || |||||||| |||| ||||||||| ||||||| || || || || Sbjct 55766 AAGGCGCACGGCAGCGCGTCGCACACAAACTCCCTCTCGATGTCCACCGCATC 55818 >seq715 Length=381403 Score = 233 bits (258), Expect = 2e-55 Identities = 228/294 (78%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| ||||||||||||||||||||||||||||| ||||| | |||| ||||| ||| Sbjct 115547 GAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTATAAGGCACGAGCCTCCGCCACCTGG 115606 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 | |||||||||||||| ||||| || || ||| |||||||| ||| ||||||||| Sbjct 115607 ATCTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATGCCATCGGAGGCGGCGAAG 115666 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| |||| |||||||||||||| || |||| || |||||| | Sbjct 115667 AATGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCAGCGGTGAGAGAGTTCCAGTGAGGG 115726 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||| | | ||| ||||||||||| ||||||| |||||||| ||||| |||||| Sbjct 115727 AGGTCCTGGGACAAGTCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCTGCCTTCTTGTAC 115786 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTG 869926 |||||||| | || | |||| |||| ||||| | | ||||| | |||||| Sbjct 115787 ATCTCCCAGATTTCCGGGTATTGGATCGGGAACATGCAGAAGCGATCTGGGTTG 115840 >seq2451 Length=68748 Score = 132 bits (146), Expect = 6e-25 Identities = 174/240 (73%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| || ||||| ||| || |||| ||| || ||||| || |||||||| Sbjct 68143 ACCCTCGTCTCGCGAGATCAATTCATTCGAGAAGGTGAGTCCCGGCATTAGCCCGCGCTT 68084 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||| ||||| || || ||| ||||||| || ||||| || || |||| |||| | || Sbjct 68083 CTTCAGCCAGAATATCGCGTAGAAACTCCCGGAGAAGAAAATCCCCTTGACGCAAACGAA 68024 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | || ||||||||||| ||| | || ||| | || ||||||||| | ||||| Sbjct 68023 CGCTATCAGCCGCTCGGCGAAGCTCTC--GGCAC----CGTCGATCCACTTGAGAGCCCA 67970 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 || ||||| ||| |||| | ||||||||||||||||| | |||| | || ||| || Sbjct 67969 ATCCGCCTTCTTCTTCACGCAGGGCACCGTGTCGATGGCATGGGAGAGTTTGTTCTTCTC 67910 Score = 123 bits (136), Expect = 3e-22 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||||||| | || | |||||| || |||||||| |||| ||||||||| Sbjct 68448 GCCTTCTGGTACTCGTCGACCCTTTTCTCGAAGAAATTGGTCTTCCCCTGAAGCGAGATC 68389 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||||||| |||||||||| | || ||| |||| || |||| | | Sbjct 68388 AGCTCCATCCAGTCAAACGGGTTGGCCACACCATATATCTTCCCGCAGCCCAGCGCCCCC 68329 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 |||| | ||| || || |||||||||||||||| ||| ||| || |||||||||| | Sbjct 68328 AGCAACCAGTCTGCCACGAACTCGATGTACTGGCTCATAAGGTCGCCGTTCATGCCCACC 68269 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923 | || ||||| | |||| ||||||||| ||||||| || || || || Sbjct 68268 AAGGCGCAGGGCAGTGCGTCGCACACAAACTCCCTCTCGATGTCCACCGCGTC 68216 >seq7066 Length=32683 Score = 114 bits (126), Expect = 2e-19 Identities = 131/175 (75%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 869636 TGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGACC 869695 |||| | | | |||||||||||| ||||| || ||||| || |||| || | |||| Sbjct 23566 TGGAAGCTGTTGATGGCGATCTGAAAGCCATAGAAGGCTAGGACTTCTGTGACCTAGACC 23625 Query 869696 TCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCG-TCGCTGGCGGCGAAAAA 869754 | ||||||||| ||| | || ||||||||| ||||||||| | | ||||||||| || Sbjct 23626 TTCTTCATGAAGCGGGCAGCAAGGTTCTCGAGGACGATGCCGTTTGGAGGCGGCGAAGAA 23685 Query 869755 AGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGG 869809 ||| || |||| ||||||||||| | | | |||| |||| || ||||||| Sbjct 23686 AGCGAGATCGTGGGTGATAAAGTGGTGGTGGCCGTCAATGAGGGAGTTCCAGTGG 23740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104860345817773