Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq318 241 2e-57
seq715 233 2e-55
seq2451 132 6e-25
seq7066 114 2e-19
>seq318
Length=266665
Score = 241 bits (266), Expect = 2e-57
Identities = 232/295 (79%), Gaps = 2/295 (1%)
Strand=Plus/Plus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
||||| |||||||| ||||||||||||||||| || ||||| | | || || || |||
Sbjct 56180 GAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGGCTCGGGCTTCCGCGACCTGG 56239
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
|||||||||||||| || | || ||||||||| ||||| |||||| |||||||||
Sbjct 56240 ACCTCCTTCATGAAGCGAGCAGCAAGGTTCTCGAGGACGATTCCGTCGGAGGCGGCGAAG 56299
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812
||||| |||||||| ||||||| ||||||||| | ||| |||| || |||||||| |
Sbjct 56300 AAAGCGAGGACGTGGGTGATAAAATGGCGCTCGCCATCGGTGAGGGAGTCCCAGTGGCGG 56359
Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872
||| | |||||| |||||||| || ||||||| |||||||| ||||| ||||||
Sbjct 56360 AGGTCCTGGGAGAGGTCGACCTCCTCAGCAGTCCAGAAGGAGGCCTCAGCCTTCTTGTAC 56419
Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTTG 869926
|||||||| | ||| |||| |||| ||||| | ||| ||||||| ||||||
Sbjct 56420 ATCTCCCAGATTTGGGGGTACTGGATCGGGAACA-TACAGAAGCGGTCTGGGTTG 56473
Score = 174 bits (192), Expect = 2e-37
Identities = 203/273 (74%), Gaps = 6/273 (2%)
Strand=Plus/Plus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| ||||| || ||||| |||||| |||| || || ||||| || ||||||||
Sbjct 55900 ACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGTCAGTCCCGGCATTAGCCCGCGCTT 55959
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
||| ||||| || || ||||||||||| || ||||| || || ||||||||| || ||
Sbjct 55960 CTTCAGCCAGAATATCGCGCAGAAACTCCCGGAGAAGAAAATCCCCTCGACGCAAGCGAA 56019
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358
|||| ||||||||||| ||| | ||| | || || ||||||||| | |||||
Sbjct 56020 CGCGATCAGCCGCTCGGCGAAGCTCTCG-GCACCGCC-----GATCCACTTGAGAGCCCA 56073
Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418
|| ||||| ||| |||| | |||||| |||||||||| | ||||| | || ||| ||
Sbjct 56074 ATCCGCCTTCTTCTTCACGCAGGGCACCATGTCGATGGCATGGAAGAGTTTGTTCTTCTC 56133
Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451
| | |||||||| |||||| |||| |||||
Sbjct 56134 ATCGGAGTCCTTGATATAGGTCTCGAGGAGGAG 56166
Score = 150 bits (166), Expect = 2e-30
Identities = 173/233 (74%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||||||||| || | |||||| || |||||||| |||| |||||||||
Sbjct 55586 GCCTTCTGGTACTCGCCGACCCTTTTCTCGAAGAAATTGGTCTTCCCCTGAAGCGAGATC 55645
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
| ||||||||| |||||||||| | ||| ||| |||| ||||||| | |
Sbjct 55646 AGCTCCATCCAGTCAAACGGGTTGGCCACACCGTATATCTTCCCGCAGCCGAGCGCCCCC 55705
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|||| ||| || || || |||||||||||||||| ||| ||| || |||||||||| |
Sbjct 55706 AGCAAGCGATCTGCCACGAACTCGATGTACTGGCTCATAAGGTCGCCGTTCATGCCCACC 55765
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923
| || |||||||| |||| ||||||||| ||||||| || || || ||
Sbjct 55766 AAGGCGCACGGCAGCGCGTCGCACACAAACTCCCTCTCGATGTCCACCGCATC 55818
>seq715
Length=381403
Score = 233 bits (258), Expect = 2e-55
Identities = 228/294 (78%), Gaps = 0/294 (0%)
Strand=Plus/Plus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
||||| ||||||||||||||||||||||||||||| ||||| | |||| ||||| |||
Sbjct 115547 GAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTATAAGGCACGAGCCTCCGCCACCTGG 115606
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
| |||||||||||||| ||||| || || ||| |||||||| ||| |||||||||
Sbjct 115607 ATCTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATGCCATCGGAGGCGGCGAAG 115666
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812
|| || |||||||| |||| |||||||||||||| || |||| || |||||| |
Sbjct 115667 AATGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCAGCGGTGAGAGAGTTCCAGTGAGGG 115726
Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872
||| | | ||| ||||||||||| ||||||| |||||||| ||||| ||||||
Sbjct 115727 AGGTCCTGGGACAAGTCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCTGCCTTCTTGTAC 115786
Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTG 869926
|||||||| | || | |||| |||| ||||| | | ||||| | ||||||
Sbjct 115787 ATCTCCCAGATTTCCGGGTATTGGATCGGGAACATGCAGAAGCGATCTGGGTTG 115840
>seq2451
Length=68748
Score = 132 bits (146), Expect = 6e-25
Identities = 174/240 (73%), Gaps = 6/240 (3%)
Strand=Plus/Minus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| ||||| || ||||| ||| || |||| ||| || ||||| || ||||||||
Sbjct 68143 ACCCTCGTCTCGCGAGATCAATTCATTCGAGAAGGTGAGTCCCGGCATTAGCCCGCGCTT 68084
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
||| ||||| || || ||| ||||||| || ||||| || || |||| |||| | ||
Sbjct 68083 CTTCAGCCAGAATATCGCGTAGAAACTCCCGGAGAAGAAAATCCCCTTGACGCAAACGAA 68024
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358
| || ||||||||||| ||| | || ||| | || ||||||||| | |||||
Sbjct 68023 CGCTATCAGCCGCTCGGCGAAGCTCTC--GGCAC----CGTCGATCCACTTGAGAGCCCA 67970
Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418
|| ||||| ||| |||| | ||||||||||||||||| | |||| | || ||| ||
Sbjct 67969 ATCCGCCTTCTTCTTCACGCAGGGCACCGTGTCGATGGCATGGGAGAGTTTGTTCTTCTC 67910
Score = 123 bits (136), Expect = 3e-22
Identities = 167/233 (72%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||||||| | || | |||||| || |||||||| |||| |||||||||
Sbjct 68448 GCCTTCTGGTACTCGTCGACCCTTTTCTCGAAGAAATTGGTCTTCCCCTGAAGCGAGATC 68389
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
| ||||||||| |||||||||| | || ||| |||| || |||| | |
Sbjct 68388 AGCTCCATCCAGTCAAACGGGTTGGCCACACCATATATCTTCCCGCAGCCCAGCGCCCCC 68329
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|||| | ||| || || |||||||||||||||| ||| ||| || |||||||||| |
Sbjct 68328 AGCAACCAGTCTGCCACGAACTCGATGTACTGGCTCATAAGGTCGCCGTTCATGCCCACC 68269
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923
| || ||||| | |||| ||||||||| ||||||| || || || ||
Sbjct 68268 AAGGCGCAGGGCAGTGCGTCGCACACAAACTCCCTCTCGATGTCCACCGCGTC 68216
>seq7066
Length=32683
Score = 114 bits (126), Expect = 2e-19
Identities = 131/175 (75%), Gaps = 1/175 (1%)
Strand=Plus/Plus
Query 869636 TGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGACC 869695
|||| | | | |||||||||||| ||||| || ||||| || |||| || | ||||
Sbjct 23566 TGGAAGCTGTTGATGGCGATCTGAAAGCCATAGAAGGCTAGGACTTCTGTGACCTAGACC 23625
Query 869696 TCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCG-TCGCTGGCGGCGAAAAA 869754
| ||||||||| ||| | || ||||||||| ||||||||| | | ||||||||| ||
Sbjct 23626 TTCTTCATGAAGCGGGCAGCAAGGTTCTCGAGGACGATGCCGTTTGGAGGCGGCGAAGAA 23685
Query 869755 AGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGG 869809
||| || |||| ||||||||||| | | | |||| |||| || |||||||
Sbjct 23686 AGCGAGATCGTGGGTGATAAAGTGGTGGTGGCCGTCAATGAGGGAGTTCCAGTGG 23740
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6104860345817773
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |