Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq1057 93.3 3e-14
seq4991 86.0 5e-12
seq536 82.4 6e-11
>seq1057
Length=141302
Score = 93.3 bits (102), Expect = 3e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331
||||| |||||||| || || || || ||||| || || || | || |||| || |
Sbjct 136267 ATGCAGATATTTGTGAAGACCTTGACTGGCAAGACTATAACTTTGGAGGTGGAGAGCTCA 136208
Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391
||||| | | | | ||||| || ||| ||||||||||| | || ||| ||
Sbjct 136207 -GATACCATTGACAATGTAAAGACCAAAATTCAGGACAAAGAAGGGATTCCTCCGGACCA 136149
Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451
||||| || || | ||| || |||||||| ||||||| ||| || |||| || |||||
Sbjct 136148 GCAAAGGCTGATCTTTGCTGGAAAACAGCTTGAGGATGGCAGGACCTTGGCTGACTACAA 136089
Query 110452 CATTCAAAAAGAATCTAC 110469
|||||| || ||||| ||
Sbjct 136088 CATTCAGAAGGAATCAAC 136071
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/200 (70%), Gaps = 6/200 (3%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329
||||| || ||||| |||||| | || || |||||||| || | || || || ||
Sbjct 136951 ATGCAGATTTTTGTGAAAACTCTTACTGGGAAAACCATCACTCTGGAGGTTGAAAGCTCT 136892
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
|| ||| | | | | || ||| |||||| |||||||||||| | || ||
Sbjct 136891 GA---TACAATTGACAATGTGAAAGCCAAGATTCAGGACAAAGAAGGCATCCCTCCTGAC 136835
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| || || || || | ||| ||||| || || ||||||| ||| ||| | || || ||
Sbjct 136834 CAGCAGAGGCTGATATTTGCTGGTAAGCAACTTGAGGATGGCAGGACACTTGCTGACTAT 136775
Query 110450 AACATTCAAAAAGAATCTAC 110469
|||||||| || ||||||||
Sbjct 136774 AACATTCAGAAGGAATCTAC 136755
>seq4991
Length=48504
Score = 86.0 bits (94), Expect = 5e-12
Identities = 160/232 (69%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329
||||| || ||||||||||| | || ||||| ||||| || | || || || ||
Sbjct 9274 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACACTTGAGGTTGAAAGCTCT 9215
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
|| ||| | | | | || || |||||| ||||| || ||| | || |||
Sbjct 9214 GA---TACCATTGACAATGTTAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCAGAT 9158
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| || || ||||||| ||| ||||||||||| ||||||| ||| || | || || |||
Sbjct 9157 CAGCAGAGGCTTATTTTTGCTGGTAAACAGCTTGAGGATGGCAGGACCCTAGCTGACTAC 9098
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501
|||||||| || || || || | || ||||| | | || || || ||||
Sbjct 9097 AACATTCAGAAGGAGTCCACCCTCCATTTGGTGCTCCGCCTCCGTGGTGGAA 9046
>seq536
Length=459343
Score = 82.4 bits (90), Expect = 6e-11
Identities = 160/232 (69%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CG-GAGC-CT 110329
||||| || || ||||||||||| || || || ||||| ||| |||| || |||| ||
Sbjct 381674 ATGCAGATCTTCGTCAAAACTTTGACTGGGAAGACCATAACCCTCGAGGTCGAGAGCTCT 381733
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
|| ||| | | | | || ||| |||||| ||||| ||||| | || ||
Sbjct 381734 GA---TACGATTGACAATGTCAAAGCGAAGATCCAGGACAAGGAAGGGATCCCACCAGAC 381790
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| || | || || | || || |||||||||||||| | | | || | || ||||||
Sbjct 381791 CAGCAGCGTCTGATATTCGCCGGGAAACAGCTGGAGGACGGCCGGACCCTCGCTGATTAC 381850
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501
||||| || || || || || | ||| ||||| | || || || || ||||
Sbjct 381851 AACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTCAGGCTCCGCGGAGGAA 381902
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412701880082117
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |