Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1057 93.3 3e-14 seq4991 86.0 5e-12 seq536 82.4 6e-11 >seq1057 Length=141302 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||||| |||||||| || || || || ||||| || || || | || |||| || | Sbjct 136267 ATGCAGATATTTGTGAAGACCTTGACTGGCAAGACTATAACTTTGGAGGTGGAGAGCTCA 136208 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | | ||||| || ||| ||||||||||| | || ||| || Sbjct 136207 -GATACCATTGACAATGTAAAGACCAAAATTCAGGACAAAGAAGGGATTCCTCCGGACCA 136149 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||| || || | ||| || |||||||| ||||||| ||| || |||| || ||||| Sbjct 136148 GCAAAGGCTGATCTTTGCTGGAAAACAGCTTGAGGATGGCAGGACCTTGGCTGACTACAA 136089 Query 110452 CATTCAAAAAGAATCTAC 110469 |||||| || ||||| || Sbjct 136088 CATTCAGAAGGAATCAAC 136071 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329 ||||| || ||||| |||||| | || || |||||||| || | || || || || Sbjct 136951 ATGCAGATTTTTGTGAAAACTCTTACTGGGAAAACCATCACTCTGGAGGTTGAAAGCTCT 136892 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || ||| | | | | || ||| |||||| |||||||||||| | || || Sbjct 136891 GA---TACAATTGACAATGTGAAAGCCAAGATTCAGGACAAAGAAGGCATCCCTCCTGAC 136835 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || || || | ||| ||||| || || ||||||| ||| ||| | || || || Sbjct 136834 CAGCAGAGGCTGATATTTGCTGGTAAGCAACTTGAGGATGGCAGGACACTTGCTGACTAT 136775 Query 110450 AACATTCAAAAAGAATCTAC 110469 |||||||| || |||||||| Sbjct 136774 AACATTCAGAAGGAATCTAC 136755 >seq4991 Length=48504 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329 ||||| || ||||||||||| | || ||||| ||||| || | || || || || Sbjct 9274 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACACTTGAGGTTGAAAGCTCT 9215 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || ||| | | | | || || |||||| ||||| || ||| | || ||| Sbjct 9214 GA---TACCATTGACAATGTTAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCAGAT 9158 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || ||||||| ||| ||||||||||| ||||||| ||| || | || || ||| Sbjct 9157 CAGCAGAGGCTTATTTTTGCTGGTAAACAGCTTGAGGATGGCAGGACCCTAGCTGACTAC 9098 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||| || || || || | || ||||| | | || || || |||| Sbjct 9097 AACATTCAGAAGGAGTCCACCCTCCATTTGGTGCTCCGCCTCCGTGGTGGAA 9046 >seq536 Length=459343 Score = 82.4 bits (90), Expect = 6e-11 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CG-GAGC-CT 110329 ||||| || || ||||||||||| || || || ||||| ||| |||| || |||| || Sbjct 381674 ATGCAGATCTTCGTCAAAACTTTGACTGGGAAGACCATAACCCTCGAGGTCGAGAGCTCT 381733 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || ||| | | | | || ||| |||||| ||||| ||||| | || || Sbjct 381734 GA---TACGATTGACAATGTCAAAGCGAAGATCCAGGACAAGGAAGGGATCCCACCAGAC 381790 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | || || |||||||||||||| | | | || | || |||||| Sbjct 381791 CAGCAGCGTCTGATATTCGCCGGGAAACAGCTGGAGGACGGCCGGACCCTCGCTGATTAC 381850 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| || || || || || | ||| ||||| | || || || || |||| Sbjct 381851 AACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTCAGGCTCCGCGGAGGAA 381902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412701880082117