Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq318 214 3e-49 seq715 167 4e-35 seq2451 132 8e-25 seq938 120 5e-21 seq259 98.7 2e-14 seq7066 86.0 1e-10 >seq318 Length=266665 Score = 214 bits (236), Expect = 3e-49 Identities = 243/325 (75%), Gaps = 6/325 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || |||||||||||| ||| || || ||||| || |||||||| Sbjct 55900 ACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGTCAGTCCCGGCATTAGCCCGCGCTT 55959 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| ||||| || || || |||||||| || ||||| || || ||||||||| || || Sbjct 55960 CTTCAGCCAGAATATCGCGCAGAAACTCCCGGAGAAGAAAATCCCCTCGACGCAAGCGAA 56019 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 ||| ||||||||||| || | || ||| | | ||||||||| | ||||| Sbjct 56020 CGCGATCAGCCGCTCGGCGAAGCTCTC--GGCACC----GCCGATCCACTTGAGAGCCCA 56073 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 || ||||| ||| |||| |||||||| |||||||||| | ||||| | || |||||| Sbjct 56074 ATCCGCCTTCTTCTTCACGCAGGGCACCATGTCGATGGCATGGAAGAGTTTGTTCTTCTC 56133 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | | |||||||| ||||| |||| |||||| ||| |||| ||||| ||||| || Sbjct 56134 ATCGGAGTCCTTGATATAGGTCTCGAGGAGGAGGCTGTACATCTCGGAGTGAATGTTCTC 56193 Query 794640 GATGGCGATCTGGAAGCCATAAAAG 794664 |||||||||||||||||||| ||| Sbjct 56194 AATGGCGATCTGGAAGCCATAGAAG 56218 Score = 192 bits (212), Expect = 9e-43 Identities = 186/239 (78%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 796159 ACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCG 796218 || |||||||||||||||||||| | || |||||||| ||||| |||||| |||| Sbjct 56234 ACCTGGACCTCCTTCATGAAGCGAGCAGCAAGGTTCTCGAGGACGATTCCGTCGGAGGCG 56293 Query 796219 GCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGAGACCCAG 796278 ||||| || ||||||||||| ||||||| || |||||| | ||| |||| ||| ||||| Sbjct 56294 GCGAAGAAAGCGAGGACGTGGGTGATAAAATGGCGCTCGCCATCGGTGAGGGAGTCCCAG 56353 Query 796279 TGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTT 796338 ||| ||| | ||||||||||||||| || ||||| ||||||||||| ||||| Sbjct 56354 TGGCGGAGGTCCTGGGAGAGGTCGACCTCCTCAGCAGTCCAGAAGGAGGCCTCAGCCTTC 56413 Query 796339 TTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGATTGGGGTT 796397 |||||||||||||| || | |||| |||| ||||||| | ||||| | ||||| Sbjct 56414 TTGTACATCTCCCAGATTTGGGGGTACTGGATCGGGAACATACAGAAGCGGTCTGGGTT 56472 Score = 152 bits (168), Expect = 8e-31 Identities = 241/337 (72%), Gaps = 10/337 (3%) Strand=Plus/Plus Query 793884 CTCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTG 793943 ||||| |||| | ||||| |||||||| || | |||||| || |||||||| Sbjct 55571 CTCGACATGACCGCTGCCTTCTGGTACTCGCCGACCCTTTTCTCGAAGAAATTGGTCTTC 55630 Query 793944 CCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCG 794003 |||| |||||||||| ||||||||| |||||||||||| ||| |||| || Sbjct 55631 CCCTGAAGCGAGATCAGCTCCATCCAGTCAAACGGGTTGGCCACACCGTATATCTTCCCG 55690 Query 794004 CACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCG 794063 || ||||||| | | |||| ||| || || ||||| || |||||||||| ||| ||| || Sbjct 55691 CAGCCGAGCGCCCCCAGCAAGCGATCTGCCACGAACTCGATGTACTGGCTCATAAGGTCG 55750 Query 794064 GCGTTCATGCCGATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTC 794122 |||||||||| | | || ||| ||||||| |||| |||||||| ||||||| || Sbjct 55751 CCGTTCATGCCCACCAAGGCGCAC-GGCAGCGCGTCGCACACAAACTCCCTCTCGATGTC 55809 Query 794123 GACGGCCTCGATGATGAT---CTGCCTGGGCACGTCGGACGACGGCTT-GTCGACGAGCA 794178 || || || | | ||| || | | || | || || | |||| ||| | |||| Sbjct 55810 CACCGCATCCCTAACGATCCCCTTCACGCGCTCCTC--AC-TCAGCTTCGTCTTC-AGCA 55865 Query 794179 TCGTGTAGAGCAGGCAGGCAAAGTCGCAATGCAGACC 794215 |||||||| ||| || |||||||| || ||||| Sbjct 55866 GTTCGTAGAGCAAGCAAGCGAAGTCGCAGTGTAGACC 55902 >seq715 Length=381403 Score = 167 bits (184), Expect = 4e-35 Identities = 188/250 (75%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | || |||| |||||||||||| | ||||| || || || |||||||| Sbjct 115592 GCCTCCGCCACCTGGATCTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATGCCA 115651 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||||||||| || ||||||||||| |||| ||||| |||||||| || |||| Sbjct 115652 TCGGAGGCGGCGAAGAATGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCAGCGGTGAGA 115711 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 ||| |||||| ||| | | ||||||||||||||| ||||| ||||||||| Sbjct 115712 GAGTTCCAGTGAGGGAGGTCCTGGGACAAGTCGACCTCCTCGGCTGTCCAGAAGGAGGCC 115771 Query 796330 TCGGCCTTTTTGTACATCTCCC--ATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGC 796387 || ||||| ||||||||||||| || |||| |||| |||| ||||||| |||| Sbjct 115772 TCTGCCTTCTTGTACATCTCCCAGATTTCCG--GGTATTGGATCGGGAACATGCAGAAGC 115829 Query 796388 GATTGGGGTT 796397 ||| ||||| Sbjct 115830 GATCTGGGTT 115839 Score = 161 bits (178), Expect = 2e-33 Identities = 230/319 (72%), Gaps = 11/319 (3%) Strand=Plus/Plus Query 794347 TCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAG 794405 |||||| |||||| ||||| | |||| | || ||||| | || ||||| || | Sbjct 115277 TCGCGA--GATCAACTCGTTCGAGAAAGTCAAC-CCAGGCATCAACCC-CGCTTTTTCAA 115332 Query 794406 CCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGAC 794465 |||||| || || ||||| || || ||||| || || ||||| ||| || || ||| Sbjct 115333 CCAAAATATCGCGCAGAAGCTTCCAGAGAAGAAAATCCCCTCCACGCAAGCGAACGCGAG 115392 Query 794466 GAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGC 794525 ||||||||| || || | | || || |||||| |||| ||||||||| || Sbjct 115393 GAGCCGCTCCGCGAACGACTTGGATCCGTC------GATCCATTTCAGCGCCCACTCAGC 115446 Query 794526 CTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGG 794585 ||| ||| || | |||||||| ||||||||| | ||||| | || |||||| | Sbjct 115447 CTTCTTCTGGACGCACGGCACCGTTTCGATGGCGTGGAAGAGTTTGTTCTTCTCATTGGA 115506 Query 794586 GTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGC 794645 |||||||||||||| |||| ||||| || |||| ||||| ||||| |||||||| Sbjct 115507 ATCCTTGACGTAGGTTTCGAGCAGGAGACTATACATCTCAGAGTGAATGTTCTCGATGGC 115566 Query 794646 GATCTGGAAGCCATAAAAG 794664 |||||||||||| || ||| Sbjct 115567 GATCTGGAAGCCGTATAAG 115585 >seq2451 Length=68748 Score = 132 bits (146), Expect = 8e-25 Identities = 184/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 793884 CTCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTG 793943 ||||| |||| | ||||| |||||| | || | |||||| || |||||||| Sbjct 68463 CTCGACATGACCACTGCCTTCTGGTACTCGTCGACCCTTTTCTCGAAGAAATTGGTCTTC 68404 Query 793944 CCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCG 794003 |||| |||||||||| ||||||||| |||||||||||| || |||| || Sbjct 68403 CCCTGAAGCGAGATCAGCTCCATCCAGTCAAACGGGTTGGCCACACCATATATCTTCCCG 68344 Query 794004 CACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCG 794063 || || |||| | | |||| | ||| || ||||| || |||||||||| ||| ||| || Sbjct 68343 CAGCCCAGCGCCCCCAGCAACCAGTCTGCCACGAACTCGATGTACTGGCTCATAAGGTCG 68284 Query 794064 GCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCG 794123 |||||||||| | | || |||||| | |||| |||||||| ||||||| || Sbjct 68283 CCGTTCATGCCCACCAAGGCGCAGGGCAGTGCGTCGCACACAAACTCCCTCTCGATGTCC 68224 Query 794124 ACGGCCTCGATGATGATC 794141 || || || | |||||| Sbjct 68223 ACCGCGTCCCTAATGATC 68206 Score = 127 bits (140), Expect = 3e-23 Identities = 173/240 (72%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || ||||||||| || ||| ||| || ||||| || |||||||| Sbjct 68143 ACCCTCGTCTCGCGAGATCAATTCATTCGAGAAGGTGAGTCCCGGCATTAGCCCGCGCTT 68084 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| ||||| || || || ||||||| || ||||| || || |||| |||| | || Sbjct 68083 CTTCAGCCAGAATATCGCGTAGAAACTCCCGGAGAAGAAAATCCCCTTGACGCAAACGAA 68024 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | | ||||||||||| || | || ||| | || ||||||||| | ||||| Sbjct 68023 CGCTATCAGCCGCTCGGCGAAGCTCTC--GGCAC----CGTCGATCCACTTGAGAGCCCA 67970 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 || ||||| ||| |||| ||||||||||||||||||| | |||| | || |||||| Sbjct 67969 ATCCGCCTTCTTCTTCACGCAGGGCACCGTGTCGATGGCATGGGAGAGTTTGTTCTTCTC 67910 >seq938 Length=147268 Score = 120 bits (132), Expect = 5e-21 Identities = 174/241 (72%), Gaps = 10/241 (4%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 |||||||||| ||||| |||||||| || || |||||| |||| || |||||| | | | Sbjct 107375 ACTTGGTGACAGCCTTAGTACCCTCCGAAACAGCGTGCTTGGCGAGCTCGCCGGGAAGAA 107434 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGT---GC 1485589 ||||| |||||||||||||||||||||| | || || | |||| ||| | || Sbjct 107435 CAAGGCGGACGGCGGTCTGGATCTCGCGGGAGGTGA---TGGTAGGCTTCTTATTGTAGC 107491 Query 1485590 GCGCCAGGCGGCCGGCCT-CGGTGCCGATGC-GGTCGATCATGTCGTTGACAAACGAGTT 1485647 | |||| || ||||| | |||| | || |||| ||||| || | || ||| Sbjct 107492 GAGCCAAACGCGAGGCCTCCTGTGC--AAGCTTCTCGAAGATGTCATTTATGAAGCTGTT 107549 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 ||||||| ||| | ||| | ||||| || | || || || |||||||| |||||||| Sbjct 107550 CATGATCCCCATAGCCTTGCTCGAGATCCCGATATCCGGATGGACCTGCTTCAGCACCTT 107609 Query 1485708 G 1485708 | Sbjct 107610 G 107610 >seq259 Length=382195 Score = 98.7 bits (108), Expect = 2e-14 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 ||||| || || || |||||||| || || || ||| | || || || ||| | | | | Sbjct 160021 TTGGTAACCGCTTTCGTACCCTCCGACACAGCATGCTTCGCGAGCTCCCCGGGAAGCACC 159962 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 || | ||||||||||| ||||| || | | ||||||| |||||| | || Sbjct 159961 AGTCTGACGGCGGTCTGAATCTCCCGAGAGGTGATCGTGGGCTTCTTGTTGTACCTGGCG 159902 Query 1485595 AGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATC 1485654 || | | ||||| | ||| |||| |||||||||| || |||||||||| Sbjct 159901 AGCCTGGAAGCCTCCTGGGCGAGCTTTTCGAAGATGTCGTTGATGAAGCTGTTCATGATC 159842 Query 1485655 GACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | ||||| || | ||||||||| |||||||| || |||||| Sbjct 159841 CCCATCGCCTTGCTCGAGATTCCGATGTCGGGGTGGACCTGCTTCAGGACCTTG 159788 >seq7066 Length=32683 Score = 86.0 bits (94), Expect = 1e-10 Identities = 91/119 (76%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 796164 GACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG-TCGCTGGCGGCGA 796222 ||||| ||||||||||||| | || |||||||| ||||||||| | | |||||||| Sbjct 23622 GACCTTCTTCATGAAGCGGGCAGCAAGGTTCTCGAGGACGATGCCGTTTGGAGGCGGCGA 23681 Query 796223 AAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGAGACCCAGTGG 796281 | || ||||| |||| |||||||||| | | | |||| |||| ||| ||||||| Sbjct 23682 AGAAAGCGAGATCGTGGGTGATAAAGTGGTGGTGGCCGTCAATGAGGGAGTTCCAGTGG 23740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913292484815591