Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq318 214 3e-49
seq715 167 4e-35
seq2451 132 8e-25
seq938 120 5e-21
seq259 98.7 2e-14
seq7066 86.0 1e-10
>seq318
Length=266665
Score = 214 bits (236), Expect = 3e-49
Identities = 243/325 (75%), Gaps = 6/325 (2%)
Strand=Plus/Plus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| ||||| || |||||||||||| ||| || || ||||| || ||||||||
Sbjct 55900 ACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGTCAGTCCCGGCATTAGCCCGCGCTT 55959
Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
||| ||||| || || || |||||||| || ||||| || || ||||||||| || ||
Sbjct 55960 CTTCAGCCAGAATATCGCGCAGAAACTCCCGGAGAAGAAAATCCCCTCGACGCAAGCGAA 56019
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519
||| ||||||||||| || | || ||| | | ||||||||| | |||||
Sbjct 56020 CGCGATCAGCCGCTCGGCGAAGCTCTC--GGCACC----GCCGATCCACTTGAGAGCCCA 56073
Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579
|| ||||| ||| |||| |||||||| |||||||||| | ||||| | || ||||||
Sbjct 56074 ATCCGCCTTCTTCTTCACGCAGGGCACCATGTCGATGGCATGGAAGAGTTTGTTCTTCTC 56133
Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639
| | |||||||| ||||| |||| |||||| ||| |||| ||||| ||||| ||
Sbjct 56134 ATCGGAGTCCTTGATATAGGTCTCGAGGAGGAGGCTGTACATCTCGGAGTGAATGTTCTC 56193
Query 794640 GATGGCGATCTGGAAGCCATAAAAG 794664
|||||||||||||||||||| |||
Sbjct 56194 AATGGCGATCTGGAAGCCATAGAAG 56218
Score = 192 bits (212), Expect = 9e-43
Identities = 186/239 (78%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 796159 ACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCG 796218
|| |||||||||||||||||||| | || |||||||| ||||| |||||| ||||
Sbjct 56234 ACCTGGACCTCCTTCATGAAGCGAGCAGCAAGGTTCTCGAGGACGATTCCGTCGGAGGCG 56293
Query 796219 GCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGAGACCCAG 796278
||||| || ||||||||||| ||||||| || |||||| | ||| |||| ||| |||||
Sbjct 56294 GCGAAGAAAGCGAGGACGTGGGTGATAAAATGGCGCTCGCCATCGGTGAGGGAGTCCCAG 56353
Query 796279 TGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTT 796338
||| ||| | ||||||||||||||| || ||||| ||||||||||| |||||
Sbjct 56354 TGGCGGAGGTCCTGGGAGAGGTCGACCTCCTCAGCAGTCCAGAAGGAGGCCTCAGCCTTC 56413
Query 796339 TTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGATTGGGGTT 796397
|||||||||||||| || | |||| |||| ||||||| | ||||| | |||||
Sbjct 56414 TTGTACATCTCCCAGATTTGGGGGTACTGGATCGGGAACATACAGAAGCGGTCTGGGTT 56472
Score = 152 bits (168), Expect = 8e-31
Identities = 241/337 (72%), Gaps = 10/337 (3%)
Strand=Plus/Plus
Query 793884 CTCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTG 793943
||||| |||| | ||||| |||||||| || | |||||| || ||||||||
Sbjct 55571 CTCGACATGACCGCTGCCTTCTGGTACTCGCCGACCCTTTTCTCGAAGAAATTGGTCTTC 55630
Query 793944 CCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCG 794003
|||| |||||||||| ||||||||| |||||||||||| ||| |||| ||
Sbjct 55631 CCCTGAAGCGAGATCAGCTCCATCCAGTCAAACGGGTTGGCCACACCGTATATCTTCCCG 55690
Query 794004 CACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCG 794063
|| ||||||| | | |||| ||| || || ||||| || |||||||||| ||| ||| ||
Sbjct 55691 CAGCCGAGCGCCCCCAGCAAGCGATCTGCCACGAACTCGATGTACTGGCTCATAAGGTCG 55750
Query 794064 GCGTTCATGCCGATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTC 794122
|||||||||| | | || ||| ||||||| |||| |||||||| ||||||| ||
Sbjct 55751 CCGTTCATGCCCACCAAGGCGCAC-GGCAGCGCGTCGCACACAAACTCCCTCTCGATGTC 55809
Query 794123 GACGGCCTCGATGATGAT---CTGCCTGGGCACGTCGGACGACGGCTT-GTCGACGAGCA 794178
|| || || | | ||| || | | || | || || | |||| ||| | ||||
Sbjct 55810 CACCGCATCCCTAACGATCCCCTTCACGCGCTCCTC--AC-TCAGCTTCGTCTTC-AGCA 55865
Query 794179 TCGTGTAGAGCAGGCAGGCAAAGTCGCAATGCAGACC 794215
|||||||| ||| || |||||||| || |||||
Sbjct 55866 GTTCGTAGAGCAAGCAAGCGAAGTCGCAGTGTAGACC 55902
>seq715
Length=381403
Score = 167 bits (184), Expect = 4e-35
Identities = 188/250 (75%), Gaps = 4/250 (2%)
Strand=Plus/Plus
Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209
||||| | || |||| |||||||||||| | ||||| || || || ||||||||
Sbjct 115592 GCCTCCGCCACCTGGATCTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATGCCA 115651
Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269
||| ||||||||| || ||||||||||| |||| ||||| |||||||| || ||||
Sbjct 115652 TCGGAGGCGGCGAAGAATGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCAGCGGTGAGA 115711
Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329
||| |||||| ||| | | ||||||||||||||| ||||| |||||||||
Sbjct 115712 GAGTTCCAGTGAGGGAGGTCCTGGGACAAGTCGACCTCCTCGGCTGTCCAGAAGGAGGCC 115771
Query 796330 TCGGCCTTTTTGTACATCTCCC--ATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGC 796387
|| ||||| ||||||||||||| || |||| |||| |||| ||||||| ||||
Sbjct 115772 TCTGCCTTCTTGTACATCTCCCAGATTTCCG--GGTATTGGATCGGGAACATGCAGAAGC 115829
Query 796388 GATTGGGGTT 796397
||| |||||
Sbjct 115830 GATCTGGGTT 115839
Score = 161 bits (178), Expect = 2e-33
Identities = 230/319 (72%), Gaps = 11/319 (3%)
Strand=Plus/Plus
Query 794347 TCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAG 794405
|||||| |||||| ||||| | |||| | || ||||| | || ||||| || |
Sbjct 115277 TCGCGA--GATCAACTCGTTCGAGAAAGTCAAC-CCAGGCATCAACCC-CGCTTTTTCAA 115332
Query 794406 CCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGAC 794465
|||||| || || ||||| || || ||||| || || ||||| ||| || || |||
Sbjct 115333 CCAAAATATCGCGCAGAAGCTTCCAGAGAAGAAAATCCCCTCCACGCAAGCGAACGCGAG 115392
Query 794466 GAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGC 794525
||||||||| || || | | || || |||||| |||| ||||||||| ||
Sbjct 115393 GAGCCGCTCCGCGAACGACTTGGATCCGTC------GATCCATTTCAGCGCCCACTCAGC 115446
Query 794526 CTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGG 794585
||| ||| || | |||||||| ||||||||| | ||||| | || |||||| |
Sbjct 115447 CTTCTTCTGGACGCACGGCACCGTTTCGATGGCGTGGAAGAGTTTGTTCTTCTCATTGGA 115506
Query 794586 GTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGC 794645
|||||||||||||| |||| ||||| || |||| ||||| ||||| ||||||||
Sbjct 115507 ATCCTTGACGTAGGTTTCGAGCAGGAGACTATACATCTCAGAGTGAATGTTCTCGATGGC 115566
Query 794646 GATCTGGAAGCCATAAAAG 794664
|||||||||||| || |||
Sbjct 115567 GATCTGGAAGCCGTATAAG 115585
>seq2451
Length=68748
Score = 132 bits (146), Expect = 8e-25
Identities = 184/258 (71%), Gaps = 0/258 (0%)
Strand=Plus/Minus
Query 793884 CTCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTG 793943
||||| |||| | ||||| |||||| | || | |||||| || ||||||||
Sbjct 68463 CTCGACATGACCACTGCCTTCTGGTACTCGTCGACCCTTTTCTCGAAGAAATTGGTCTTC 68404
Query 793944 CCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCG 794003
|||| |||||||||| ||||||||| |||||||||||| || |||| ||
Sbjct 68403 CCCTGAAGCGAGATCAGCTCCATCCAGTCAAACGGGTTGGCCACACCATATATCTTCCCG 68344
Query 794004 CACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCG 794063
|| || |||| | | |||| | ||| || ||||| || |||||||||| ||| ||| ||
Sbjct 68343 CAGCCCAGCGCCCCCAGCAACCAGTCTGCCACGAACTCGATGTACTGGCTCATAAGGTCG 68284
Query 794064 GCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCG 794123
|||||||||| | | || |||||| | |||| |||||||| ||||||| ||
Sbjct 68283 CCGTTCATGCCCACCAAGGCGCAGGGCAGTGCGTCGCACACAAACTCCCTCTCGATGTCC 68224
Query 794124 ACGGCCTCGATGATGATC 794141
|| || || | ||||||
Sbjct 68223 ACCGCGTCCCTAATGATC 68206
Score = 127 bits (140), Expect = 3e-23
Identities = 173/240 (72%), Gaps = 6/240 (3%)
Strand=Plus/Minus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| ||||| || ||||||||| || ||| ||| || ||||| || ||||||||
Sbjct 68143 ACCCTCGTCTCGCGAGATCAATTCATTCGAGAAGGTGAGTCCCGGCATTAGCCCGCGCTT 68084
Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
||| ||||| || || || ||||||| || ||||| || || |||| |||| | ||
Sbjct 68083 CTTCAGCCAGAATATCGCGTAGAAACTCCCGGAGAAGAAAATCCCCTTGACGCAAACGAA 68024
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519
| | ||||||||||| || | || ||| | || ||||||||| | |||||
Sbjct 68023 CGCTATCAGCCGCTCGGCGAAGCTCTC--GGCAC----CGTCGATCCACTTGAGAGCCCA 67970
Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579
|| ||||| ||| |||| ||||||||||||||||||| | |||| | || ||||||
Sbjct 67969 ATCCGCCTTCTTCTTCACGCAGGGCACCGTGTCGATGGCATGGGAGAGTTTGTTCTTCTC 67910
>seq938
Length=147268
Score = 120 bits (132), Expect = 5e-21
Identities = 174/241 (72%), Gaps = 10/241 (4%)
Strand=Plus/Plus
Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532
|||||||||| ||||| |||||||| || || |||||| |||| || |||||| | | |
Sbjct 107375 ACTTGGTGACAGCCTTAGTACCCTCCGAAACAGCGTGCTTGGCGAGCTCGCCGGGAAGAA 107434
Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGT---GC 1485589
||||| |||||||||||||||||||||| | || || | |||| ||| | ||
Sbjct 107435 CAAGGCGGACGGCGGTCTGGATCTCGCGGGAGGTGA---TGGTAGGCTTCTTATTGTAGC 107491
Query 1485590 GCGCCAGGCGGCCGGCCT-CGGTGCCGATGC-GGTCGATCATGTCGTTGACAAACGAGTT 1485647
| |||| || ||||| | |||| | || |||| ||||| || | || |||
Sbjct 107492 GAGCCAAACGCGAGGCCTCCTGTGC--AAGCTTCTCGAAGATGTCATTTATGAAGCTGTT 107549
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707
||||||| ||| | ||| | ||||| || | || || || |||||||| ||||||||
Sbjct 107550 CATGATCCCCATAGCCTTGCTCGAGATCCCGATATCCGGATGGACCTGCTTCAGCACCTT 107609
Query 1485708 G 1485708
|
Sbjct 107610 G 107610
>seq259
Length=382195
Score = 98.7 bits (108), Expect = 2e-14
Identities = 162/234 (69%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534
||||| || || || |||||||| || || || ||| | || || || ||| | | | |
Sbjct 160021 TTGGTAACCGCTTTCGTACCCTCCGACACAGCATGCTTCGCGAGCTCCCCGGGAAGCACC 159962
Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594
|| | ||||||||||| ||||| || | | ||||||| |||||| | ||
Sbjct 159961 AGTCTGACGGCGGTCTGAATCTCCCGAGAGGTGATCGTGGGCTTCTTGTTGTACCTGGCG 159902
Query 1485595 AGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATC 1485654
|| | | ||||| | ||| |||| |||||||||| || ||||||||||
Sbjct 159901 AGCCTGGAAGCCTCCTGGGCGAGCTTTTCGAAGATGTCGTTGATGAAGCTGTTCATGATC 159842
Query 1485655 GACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708
||||| ||| | ||||| || | ||||||||| |||||||| || ||||||
Sbjct 159841 CCCATCGCCTTGCTCGAGATTCCGATGTCGGGGTGGACCTGCTTCAGGACCTTG 159788
>seq7066
Length=32683
Score = 86.0 bits (94), Expect = 1e-10
Identities = 91/119 (76%), Gaps = 1/119 (1%)
Strand=Plus/Plus
Query 796164 GACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG-TCGCTGGCGGCGA 796222
||||| ||||||||||||| | || |||||||| ||||||||| | | ||||||||
Sbjct 23622 GACCTTCTTCATGAAGCGGGCAGCAAGGTTCTCGAGGACGATGCCGTTTGGAGGCGGCGA 23681
Query 796223 AAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGAGACCCAGTGG 796281
| || ||||| |||| |||||||||| | | | |||| |||| ||| |||||||
Sbjct 23682 AGAAAGCGAGATCGTGGGTGATAAAGTGGTGGTGGCCGTCAATGAGGGAGTTCCAGTGG 23740
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7913292484815591
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