Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq4991 95.1 1e-14
seq1034 93.3 3e-14
seq6423 86.0 5e-12
seq1057 84.2 2e-11
seq536 84.2 2e-11
>seq4991
Length=48504
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| || ||||||||||| | || ||||| ||||| || | || || |||
Sbjct 9274 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACACTTGAGGTTGAAAGCTCT 9215
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||||| | | | | || || |||||| || || || ||| | || |||||
Sbjct 9214 -GATACCATTGACAATGTTAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCAGATCA 9156
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| ||||||| ||| ||||||||||| ||||| | || || | || ||||||||
Sbjct 9155 GCAGAGGCTTATTTTTGCTGGTAAACAGCTTGAGGATGGCAGGACCCTAGCTGACTACAA 9096
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|||||| |||||||| || | || |||||
Sbjct 9095 CATTCAGAAGGAGTCCACCCTCCATTTGGTG 9065
Score = 86.0 bits (94), Expect = 5e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613
||||||||| ||||| ||||| | || || ||||| || || | || ||| |||
Sbjct 9047 AATGCAAATCTTTGTGAAAACACTCACTGGGAAAACAATCACTTTGGAGGTGGAAAGCTC 8988
Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673
||||| | | | | || ||| || ||| ||||| |||||| | || |||||
Sbjct 8987 T-GATACCATTGACAATGTCAAAGCCAAAATTCAGGATAAGGAAGGCATCCCACCGGATC 8929
Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733
||||||| ||||| | ||| || || ||||| || || | ||| | | |||||||
Sbjct 8928 AGCAGAGGCTTATCTTTGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTGGTGACTACA 8869
Query 107734 ACATTCAAAAGGAGTCTAC 107752
|||||||||||||||| ||
Sbjct 8868 ACATTCAAAAGGAGTCAAC 8850
Score = 82.4 bits (90), Expect = 6e-11
Identities = 68/83 (82%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729
||||||||||| ||||| | ||| || |||||||| ||||||| |||| | || |||
Sbjct 8704 GATCAGCAGAGGCTTATCTTTGCTGGGAAACAGCTCGAGGACGGTCGAACACTTGCTGAC 8645
Query 107730 TACAACATTCAAAAGGAGTCTAC 107752
|| ||||||||||||||||| ||
Sbjct 8644 TATAACATTCAAAAGGAGTCGAC 8622
>seq1034
Length=134858
Score = 93.3 bits (102), Expect = 3e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
|||||||| || || ||||| | || ||||| ||||| ||| | || || |||
Sbjct 71863 ATGCAAATCTTCGTGAAAACACTTACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCA 71922
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| ||| | | | || ||| ||||||| || || || || | || |||||
Sbjct 71923 -GACACTATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGAATTCCTCCTGATCA 71981
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||||||||||| ||| ||||| ||||||||||| | | || | |||||||| ||
Sbjct 71982 GCAGAGACTTATTTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCGGACTATAA 72041
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764
|| || |||||||| || ||||| ||||
Sbjct 72042 TATCCAGAAGGAGTCCACCCTGCACCTGGT 72071
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || |||||||| ||| | || || || ||||| ||| | ||| |||| |
Sbjct 72319 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACCATCACCTTGGAAGTGGAGAGTTCA 72378
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| ||| ||| | | || ||| |||||| || || ||||| | || ||||||
Sbjct 72379 GACACTATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGAATCCCTCCAGATCAG 72438
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|| || || || | ||| || ||||| || ||||| | || | || |||||||||
Sbjct 72439 CAAAGGCTCATCTTTGCTGGCAAACAACTTGAGGATGGTCGTACTCTTGCTGACTACAAC 72498
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764
|| |||||||||||||| | ||| ||||
Sbjct 72499 ATCCAAAAGGAGTCTACTCTCCACCTGGT 72527
>seq6423
Length=19511
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || || || ||||| |||| || || ||||||||| ||||| || || |
Sbjct 10049 ATGCAGATCTTCGTGAAAACCCTAACCGGGAAGACCATTACCCTCGAAGTTGAATCTTCC 9990
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| ||| | | || || |||||| || || ||||| | || || |||
Sbjct 9989 GATACCATCGACAATGTGAAGGCCAAGATTCAGGACAAGGAAGGGATCCCTCCCGACCAG 9930
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | || || | || || || ||||||||||||| | || | || |||||||||
Sbjct 9929 CAGCGCCTGATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGGACCCTCGCCGACTACAAC 9870
Query 107736 ATTCAAAAGGAGTCTAC 107752
|| || |||||||| ||
Sbjct 9869 ATACAGAAGGAGTCCAC 9853
>seq1057
Length=141302
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/199 (71%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| || ||||| || || || || ||||| || || || | || |||| |||
Sbjct 136267 ATGCAGATATTTGTGAAGACCTTGACTGGCAAGACTATAACTTTGGAGGTGGAGAGCTCA 136208
Query 107615 CGATACTGTCGGCCAGGTAAA-ACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673
||||| | | | | ||||| || ||| ||| || |||||||| | || ||| |
Sbjct 136207 -GATACCATTGACAATGTAAAGACCAAA-ATTCAGGACAAAGAAGGGATTCCTCCGGACC 136150
Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733
|||| || || || | ||| || |||||||| ||||| | || || |||| |||||||
Sbjct 136149 AGCAAAGGCTGATCTTTGCTGGAAAACAGCTTGAGGATGGCAGGACCTTGGCTGACTACA 136090
Query 107734 ACATTCAAAAGGAGTCTAC 107752
||||||| ||||| || ||
Sbjct 136089 ACATTCAGAAGGAATCAAC 136071
>seq536
Length=459343
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| || || ||||||||||| || || || ||||| ||| |||| ||| |||
Sbjct 381674 ATGCAGATCTTCGTCAAAACTTTGACTGGGAAGACCATAACCCTCGAGGTCGAGAGCTCT 381733
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||||| | | | | || ||| ||||| || || ||||| | || || ||
Sbjct 381734 -GATACGATTGACAATGTCAAAGCGAAGATCCAGGACAAGGAAGGGATCCCACCAGACCA 381792
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||| | || || | || || |||||||||||||||| | || | || || |||||
Sbjct 381793 GCAGCGTCTGATATTCGCCGGGAAACAGCTGGAGGACGGCCGGACCCTCGCTGATTACAA 381852
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784
||| || |||||||| || | ||| ||||| | || | || || ||||
Sbjct 381853 CATCCAGAAGGAGTCCACTCTCCACCTGGTGCTCAGGCTCCGCGGAGGAA 381902
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398741806254841
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |