Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq4991 95.1 1e-14 seq1034 93.3 3e-14 seq6423 86.0 5e-12 seq1057 84.2 2e-11 seq536 84.2 2e-11 >seq4991 Length=48504 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||||||||| | || ||||| ||||| || | || || ||| Sbjct 9274 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACACTTGAGGTTGAAAGCTCT 9215 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || |||||| || || || ||| | || ||||| Sbjct 9214 -GATACCATTGACAATGTTAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCAGATCA 9156 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||||| ||| ||||||||||| ||||| | || || | || |||||||| Sbjct 9155 GCAGAGGCTTATTTTTGCTGGTAAACAGCTTGAGGATGGCAGGACCCTAGCTGACTACAA 9096 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| |||||||| || | || ||||| Sbjct 9095 CATTCAGAAGGAGTCCACCCTCCATTTGGTG 9065 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| ||||| | || || ||||| || || | || ||| ||| Sbjct 9047 AATGCAAATCTTTGTGAAAACACTCACTGGGAAAACAATCACTTTGGAGGTGGAAAGCTC 8988 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| | | | | || ||| || ||| ||||| |||||| | || ||||| Sbjct 8987 T-GATACCATTGACAATGTCAAAGCCAAAATTCAGGATAAGGAAGGCATCCCACCGGATC 8929 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| ||||| | ||| || || ||||| || || | ||| | | ||||||| Sbjct 8928 AGCAGAGGCTTATCTTTGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTGGTGACTACA 8869 Query 107734 ACATTCAAAAGGAGTCTAC 107752 |||||||||||||||| || Sbjct 8868 ACATTCAAAAGGAGTCAAC 8850 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||||||||| ||||| | ||| || |||||||| ||||||| |||| | || ||| Sbjct 8704 GATCAGCAGAGGCTTATCTTTGCTGGGAAACAGCTCGAGGACGGTCGAACACTTGCTGAC 8645 Query 107730 TACAACATTCAAAAGGAGTCTAC 107752 || ||||||||||||||||| || Sbjct 8644 TATAACATTCAAAAGGAGTCGAC 8622 >seq1034 Length=134858 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || || ||||| | || ||||| ||||| ||| | || || ||| Sbjct 71863 ATGCAAATCTTCGTGAAAACACTTACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCA 71922 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | || ||| ||||||| || || || || | || ||||| Sbjct 71923 -GACACTATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGAATTCCTCCTGATCA 71981 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||||||||| ||| ||||| ||||||||||| | | || | |||||||| || Sbjct 71982 GCAGAGACTTATTTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCGGACTATAA 72041 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || || |||||||| || ||||| |||| Sbjct 72042 TATCCAGAAGGAGTCCACCCTGCACCTGGT 72071 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| ||| | || || || ||||| ||| | ||| |||| | Sbjct 72319 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACCATCACCTTGGAAGTGGAGAGTTCA 72378 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| ||| | | || ||| |||||| || || ||||| | || |||||| Sbjct 72379 GACACTATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGAATCCCTCCAGATCAG 72438 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || || || | ||| || ||||| || ||||| | || | || ||||||||| Sbjct 72439 CAAAGGCTCATCTTTGCTGGCAAACAACTTGAGGATGGTCGTACTCTTGCTGACTACAAC 72498 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || |||||||||||||| | ||| |||| Sbjct 72499 ATCCAAAAGGAGTCTACTCTCCACCTGGT 72527 >seq6423 Length=19511 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || ||||| |||| || || ||||||||| ||||| || || | Sbjct 10049 ATGCAGATCTTCGTGAAAACCCTAACCGGGAAGACCATTACCCTCGAAGTTGAATCTTCC 9990 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || |||||| || || ||||| | || || ||| Sbjct 9989 GATACCATCGACAATGTGAAGGCCAAGATTCAGGACAAGGAAGGGATCCCTCCCGACCAG 9930 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||||||||||| | || | || ||||||||| Sbjct 9929 CAGCGCCTGATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGGACCCTCGCCGACTACAAC 9870 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || |||||||| || Sbjct 9869 ATACAGAAGGAGTCCAC 9853 >seq1057 Length=141302 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || || || || ||||| || || || | || |||| ||| Sbjct 136267 ATGCAGATATTTGTGAAGACCTTGACTGGCAAGACTATAACTTTGGAGGTGGAGAGCTCA 136208 Query 107615 CGATACTGTCGGCCAGGTAAA-ACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| | | | | ||||| || ||| ||| || |||||||| | || ||| | Sbjct 136207 -GATACCATTGACAATGTAAAGACCAAA-ATTCAGGACAAAGAAGGGATTCCTCCGGACC 136150 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 |||| || || || | ||| || |||||||| ||||| | || || |||| ||||||| Sbjct 136149 AGCAAAGGCTGATCTTTGCTGGAAAACAGCTTGAGGATGGCAGGACCTTGGCTGACTACA 136090 Query 107734 ACATTCAAAAGGAGTCTAC 107752 ||||||| ||||| || || Sbjct 136089 ACATTCAGAAGGAATCAAC 136071 >seq536 Length=459343 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || ||||||||||| || || || ||||| ||| |||| ||| ||| Sbjct 381674 ATGCAGATCTTCGTCAAAACTTTGACTGGGAAGACCATAACCCTCGAGGTCGAGAGCTCT 381733 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || ||| ||||| || || ||||| | || || || Sbjct 381734 -GATACGATTGACAATGTCAAAGCGAAGATCCAGGACAAGGAAGGGATCCCACCAGACCA 381792 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || || |||||||||||||||| | || | || || ||||| Sbjct 381793 GCAGCGTCTGATATTCGCCGGGAAACAGCTGGAGGACGGCCGGACCCTCGCTGATTACAA 381852 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||| || |||||||| || | ||| ||||| | || | || || |||| Sbjct 381853 CATCCAGAAGGAGTCCACTCTCCACCTGGTGCTCAGGCTCCGCGGAGGAA 381902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398741806254841