Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq752 351 1e-91 seq1263 295 7e-75 seq2510 129 6e-25 seq587 109 6e-19 >seq752 Length=193215 Score = 351 bits (388), Expect = 1e-91 Identities = 485/670 (72%), Gaps = 8/670 (1%) Strand=Plus/Minus Query 158852 TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATAC 158911 ||| ||| | ||| | || || ||| |||| || || || || | || |||||||| Sbjct 189601 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 189542 Query 158912 ACATGGACTCGCTACTTCCTATCTTGAGGG-TGCAAACTTTCTTA-CAGCAGCAGTTTCG 158969 |||||| | |||| ||||||| | || || ||||| ||||||| | || ||||||||| Sbjct 189541 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 189484 Query 158970 ACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGG 159029 ||||| || || | | | ||||| | || | || || |||||||| || ||||| Sbjct 189483 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGAAGCCCAAGGA 189424 Query 159030 GATTTCGTCAGGTGGGTCCAACTTGGG-GGACTCTGGAATTTTGTGGCGCTCCACGGTGC 159088 ||||| | | || ||| | | ||||| || || |||| ||||| || |||||||| | Sbjct 189423 GATTT-GACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCAC 189365 Query 159089 CTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACTGGCACG-TCTCATCGGTATCC 159147 || | ||||| ||||| ||| | || || ||||||| || || ||| || | | | Sbjct 189364 TTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGTTCAAT-TGC 189306 Query 159148 GTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTA 159207 | || || ||||| || || ||||||| ||| |||||||||||||| || ||||| | Sbjct 189305 GACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGA 189246 Query 159208 TCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCGCAATAT 159267 | || ||||| |||||||| ||||||| || || || ||||| || || || |||| Sbjct 189245 TTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATAT 189186 Query 159268 TCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACTAAACCCCTTCCATATGA 159327 | | ||| | || || | |||||||| || ||||||||| | ||||| || ||||||| Sbjct 189185 TTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGA 189126 Query 159328 TGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTATTCATGGGGTCACAGTTG 159387 |||||||||| ||| | | || | || || |||| ||||| ||||| | || || | Sbjct 189125 TGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGTAG 189066 Query 159388 AAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCAACTC 159447 ||||||| |||| || ||||| || ||||| || || |||||| | |||| | Sbjct 189065 AAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACCC 189006 Query 159448 AAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCA 159507 ||| || || |||||||| |||||||| || |||||||| ||||| || ||||| || Sbjct 189005 AAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGG 188946 Query 159508 TTGCGTTTTC 159517 |||| ||||| Sbjct 188945 TTGCTTTTTC 188936 >seq1263 Length=120960 Score = 295 bits (326), Expect = 7e-75 Identities = 417/580 (72%), Gaps = 6/580 (1%) Strand=Plus/Plus Query 158852 TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATAC 158911 ||| ||| | ||| | || || ||| |||| || || || || | || |||||||| Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865 Query 158912 ACATGGACTCGCTACTTCCTATCTTGAGGG-TGCAAACTTTCTTA-CAGCAGCAGTTTCG 158969 |||||| | |||| ||||||| | || || ||||| ||||||| | || ||||||||| Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 54923 Query 158970 ACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGG 159029 ||||| || || | | | ||||| | || | || ||||||||||| || ||||| Sbjct 54924 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGA 54983 Query 159030 GATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGTGCC 159089 ||||| | ||| |||| | || || || |||| ||||| || |||||||| || Sbjct 54984 GATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCT 55043 Query 159090 TTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACTGGCACG-TCTCATCGGTATCCG 159148 || | ||||| ||||| ||| | || || |||||||| || || ||| || | | || Sbjct 55044 TTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCG 55102 Query 159149 TCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTAT 159208 || || ||||| || || ||||||| ||| |||||||||||||| || ||||| || Sbjct 55103 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 55162 Query 159209 CTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCGCAATATT 159268 || ||||| |||||||| ||||||| || || || ||||| || || || ||||| Sbjct 55163 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 55222 Query 159269 CAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACTAAACCCCTTCCATATGAT 159328 | ||| | || || | |||||||| || ||||||||| | ||||| || |||||||| Sbjct 55223 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 55282 Query 159329 GGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTATTCATGGGGTCACAGTTGA 159388 ||||||||| ||| | | || | || || |||| ||||| ||||| | | || || Sbjct 55283 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGA 55342 Query 159389 AAATACATTATACGAGGATGGAGAACAAGCAAACACCTTT 159428 |||||| |||| || ||||| || ||||| || ||| Sbjct 55343 AAATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382 >seq2510 Length=74850 Score = 129 bits (142), Expect = 6e-25 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 159594 GGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAA 159653 ||||| ||||| || || || || || || ||| | || || ||| | ||||| ||| Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941 Query 159654 GATCCAGAATTTGAAACGTTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCT 159713 ||||| |||||||| || ||||||||||| || |||||| | || ||||| | |||||| Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881 Query 159714 TGGTTGGCACCTGCTGATCAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACC 159772 ||| |||| || ||||| || ||||||||| | || ||||| || || |||||||| Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 56822 >seq587 Length=401750 Score = 109 bits (120), Expect = 6e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 157873 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 157932 ||||| ||||| |||||||| || |||||||| |||||||| || | ||||| |||| Sbjct 44406 AGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA 44465 Query 157933 GGTCGTGTGTTGAACACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTT 157992 |||||||| | || || | || ||| | | || | | | ||||||||||||||| Sbjct 44466 GGTCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAGTT 44525 Query 157993 ATGCATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCT 158037 |||||||| | ||| | || ||||| || |||| || |||||| Sbjct 44526 ATGCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545084328717520