Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_023587.1
Length=189311
Score E
Sequences producing significant alignments: (Bits) Value
seq752 361 7e-95
seq1263 322 6e-83
seq124 131 2e-25
seq2510 116 4e-21
seq5090 87.8 2e-12
>seq752
Length=193215
Score = 361 bits (400), Expect = 7e-95
Identities = 484/667 (73%), Gaps = 6/667 (1%)
Strand=Plus/Minus
Query 179016 TGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACAC 179075
||| ||| | || | || || ||| |||| || ||| | ||||| || ||||| ||
Sbjct 189601 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 189542
Query 179076 CCATGGTCTTGCTAGTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGCTGTCTCG 179133
||||| | |||||||||||| | ||||| ||| | ||||||| | || || || |||
Sbjct 189541 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 189484
Query 179134 ACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGG 179193
|| ||||| || | | | ||||| | | |||| || |||||||| | || ||
Sbjct 189483 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGAAGCCCAAGGA 189424
Query 179194 AATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCC 179253
|||| || ||||||||| | || || || |||| || || ||||||||||| |
Sbjct 189423 GATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCACT 189364
Query 179254 TTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCG 179312
|||| ||||| || || ||| | ||||| ||||||| || || ||| || | | ||
Sbjct 189363 TTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGTTCAAT-TGCG 189305
Query 179313 TCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTTCTCAT 179372
||||| ||||| || || || ||| ||| ||||| || || ||| |||||| || ||
Sbjct 189304 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 189245
Query 179373 CTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATCTT 179432
|| ||||| || || || |||||||||||||||| |||||||| ||||| || ||
Sbjct 189244 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 189185
Query 179433 TAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGAT 179492
| ||||| | ||||| || ||||| || || || |||||| | ||||| ||||| |||||
Sbjct 189184 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 189125
Query 179493 GGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGA 179552
||||||||| ||| | |||| | |||||||| | ||||| ||||| | ||||||||
Sbjct 189124 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGTAGA 189065
Query 179553 GAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCTACGCA 179612
||||| || | ||||||||| || ||||| ||||| ||||| || | || ||
Sbjct 189064 AAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACCCA 189005
Query 179613 AGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTCGGGGT 179672
|| || || || ||||| ||||| || || ||||| |||||||| || ||||| |||||
Sbjct 189004 AGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGT 188945
Query 179673 TCCGTTT 179679
| | |||
Sbjct 188944 TGCTTTT 188938
>seq1263
Length=120960
Score = 322 bits (356), Expect = 6e-83
Identities = 423/580 (73%), Gaps = 6/580 (1%)
Strand=Plus/Plus
Query 179016 TGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACAC 179075
||| ||| | || | || || ||| |||| || ||| | ||||| || ||||| ||
Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865
Query 179076 CCATGGTCTTGCTAGTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGCTGTCTCG 179133
||||| | |||||||||||| | ||||| ||| | ||||||| | || || || |||
Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 54923
Query 179134 ACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGG 179193
|| ||||| || | | | ||||| | | |||| ||||||||||| | || ||
Sbjct 54924 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGA 54983
Query 179194 AATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCC 179253
|||| || ||||||||| | || || || |||| || || ||||||||||| ||
Sbjct 54984 GATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCT 55043
Query 179254 TTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCG 179312
|||| ||||| || || ||| | ||||| |||||||| || || ||| || | | ||
Sbjct 55044 TTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCG 55102
Query 179313 TCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTTCTCAT 179372
||||| ||||| || || || ||| ||| ||||| || || ||| |||||| || ||
Sbjct 55103 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 55162
Query 179373 CTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATCTT 179432
|| ||||| || || || |||||||||||||||| |||||||| ||||| || ||
Sbjct 55163 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 55222
Query 179433 TAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGAT 179492
| ||||| | ||||| || ||||| || || || |||||| | ||||| ||||| |||||
Sbjct 55223 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 55282
Query 179493 GGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGA 179552
||||||||| ||| | |||| | |||||||| | ||||| ||||| | | ||||||
Sbjct 55283 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGA 55342
Query 179553 GAATACATTGTATGAAGATGGAGAACAAGCAAACACATTT 179592
||||| || | ||||||||| || ||||| ||||||
Sbjct 55343 AAATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382
>seq124
Length=378598
Score = 131 bits (144), Expect = 2e-25
Identities = 171/234 (73%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 138528 TGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTG 138587
||||||| ||| ||||||||| || ||||| | ||||| || || || || ||||| ||
Sbjct 235666 TGATGATGAGTTCATCCTTGACGCAGCTGAGAATGCAGGGATGGACCTGCCATACTCGTG 235725
Query 138588 TCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTC 138647
| ||||| || || || || || || || || | ||||| ||||| || ||||| ||
Sbjct 235726 CAGGGCTGGGGCTTGCTCAACATGCGCGGGGAAGATCGTTGAGGGAACAGTGGATCAATC 235785
Query 138648 TGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATT-TATCATGACTTGCGTAG 138706
|||| ||| ||||||||||| ||||||| || || ||| || | | |||| |||||
Sbjct 235786 TGACGGGTCATTCCTTGATGACGACCAAA-TGGAGAAGGGTTATGTGCTGACATGCGTTT 235844
Query 138707 CATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACT 138760
|||| || || || |||||| | ||| | || | || ||| || || ||||
Sbjct 235845 CATATCCAACTTCGGATTGTGTGATTCATACCCACAAGGAGAGTGATCTTTACT 235898
>seq2510
Length=74850
Score = 116 bits (128), Expect = 4e-21
Identities = 139/189 (74%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 179758 GGGCTAGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAA 179817
|| || ||||| || || || || ||||| || | || || ||| | ||||| |||
Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941
Query 179818 GATCCTGAGTTCGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTACGTGCT 179877
|||||||| || ||||| ||||| || || || |||||| | || ||||| | ||||||
Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881
Query 179878 TGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTACCT 179937
||| |||| || ||||| || ||||||||| | || ||||| || || || |||||
Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 56821
Query 179938 AGTGGTAAC 179946
|||| |||
Sbjct 56820 CGTGGAAAC 56812
>seq5090
Length=30266
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/136 (75%), Gaps = 9/136 (7%)
Strand=Plus/Plus
Query 177895 GTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTG 177954
|||||||||||||| | |||| | ||||||| ||| |||||| ||||||||| || |
Sbjct 12997 GTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCACCCTTGGATCACTGTTGCATATTCAG 13056
Query 177955 CACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTC 178013
| |||||||||| ||| || ||||| | ||||||| | |||||||| ||
Sbjct 13057 CTCCTGTTGCAG-------CGCCGT-TTTCTTGATCTATCCAATTGGTCAAGGAAGCTTT 13108
Query 178014 TCCGATGCTATGCCTC 178029
|| |||| ||||||||
Sbjct 13109 TCTGATGGTATGCCTC 13124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 605456965344040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |