Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq752 361 7e-95 seq1263 322 6e-83 seq124 131 2e-25 seq2510 116 4e-21 seq5090 87.8 2e-12 >seq752 Length=193215 Score = 361 bits (400), Expect = 7e-95 Identities = 484/667 (73%), Gaps = 6/667 (1%) Strand=Plus/Minus Query 179016 TGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACAC 179075 ||| ||| | || | || || ||| |||| || ||| | ||||| || ||||| || Sbjct 189601 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 189542 Query 179076 CCATGGTCTTGCTAGTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGCTGTCTCG 179133 ||||| | |||||||||||| | ||||| ||| | ||||||| | || || || ||| Sbjct 189541 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 189484 Query 179134 ACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGG 179193 || ||||| || | | | ||||| | | |||| || |||||||| | || || Sbjct 189483 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGAAGCCCAAGGA 189424 Query 179194 AATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCC 179253 |||| || ||||||||| | || || || |||| || || ||||||||||| | Sbjct 189423 GATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCACT 189364 Query 179254 TTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCG 179312 |||| ||||| || || ||| | ||||| ||||||| || || ||| || | | || Sbjct 189363 TTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGTTCAAT-TGCG 189305 Query 179313 TCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTTCTCAT 179372 ||||| ||||| || || || ||| ||| ||||| || || ||| |||||| || || Sbjct 189304 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 189245 Query 179373 CTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATCTT 179432 || ||||| || || || |||||||||||||||| |||||||| ||||| || || Sbjct 189244 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 189185 Query 179433 TAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGAT 179492 | ||||| | ||||| || ||||| || || || |||||| | ||||| ||||| ||||| Sbjct 189184 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 189125 Query 179493 GGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGA 179552 ||||||||| ||| | |||| | |||||||| | ||||| ||||| | |||||||| Sbjct 189124 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGTAGA 189065 Query 179553 GAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCTACGCA 179612 ||||| || | ||||||||| || ||||| ||||| ||||| || | || || Sbjct 189064 AAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACCCA 189005 Query 179613 AGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTCGGGGT 179672 || || || || ||||| ||||| || || ||||| |||||||| || ||||| ||||| Sbjct 189004 AGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGT 188945 Query 179673 TCCGTTT 179679 | | ||| Sbjct 188944 TGCTTTT 188938 >seq1263 Length=120960 Score = 322 bits (356), Expect = 6e-83 Identities = 423/580 (73%), Gaps = 6/580 (1%) Strand=Plus/Plus Query 179016 TGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACAC 179075 ||| ||| | || | || || ||| |||| || ||| | ||||| || ||||| || Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865 Query 179076 CCATGGTCTTGCTAGTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGCTGTCTCG 179133 ||||| | |||||||||||| | ||||| ||| | ||||||| | || || || ||| Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 54923 Query 179134 ACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGG 179193 || ||||| || | | | ||||| | | |||| ||||||||||| | || || Sbjct 54924 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGA 54983 Query 179194 AATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCC 179253 |||| || ||||||||| | || || || |||| || || ||||||||||| || Sbjct 54984 GATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCT 55043 Query 179254 TTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCG 179312 |||| ||||| || || ||| | ||||| |||||||| || || ||| || | | || Sbjct 55044 TTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCG 55102 Query 179313 TCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTTCTCAT 179372 ||||| ||||| || || || ||| ||| ||||| || || ||| |||||| || || Sbjct 55103 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 55162 Query 179373 CTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATCTT 179432 || ||||| || || || |||||||||||||||| |||||||| ||||| || || Sbjct 55163 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 55222 Query 179433 TAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGAT 179492 | ||||| | ||||| || ||||| || || || |||||| | ||||| ||||| ||||| Sbjct 55223 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 55282 Query 179493 GGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGA 179552 ||||||||| ||| | |||| | |||||||| | ||||| ||||| | | |||||| Sbjct 55283 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGA 55342 Query 179553 GAATACATTGTATGAAGATGGAGAACAAGCAAACACATTT 179592 ||||| || | ||||||||| || ||||| |||||| Sbjct 55343 AAATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382 >seq124 Length=378598 Score = 131 bits (144), Expect = 2e-25 Identities = 171/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 138528 TGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTG 138587 ||||||| ||| ||||||||| || ||||| | ||||| || || || || ||||| || Sbjct 235666 TGATGATGAGTTCATCCTTGACGCAGCTGAGAATGCAGGGATGGACCTGCCATACTCGTG 235725 Query 138588 TCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTC 138647 | ||||| || || || || || || || || | ||||| ||||| || ||||| || Sbjct 235726 CAGGGCTGGGGCTTGCTCAACATGCGCGGGGAAGATCGTTGAGGGAACAGTGGATCAATC 235785 Query 138648 TGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATT-TATCATGACTTGCGTAG 138706 |||| ||| ||||||||||| ||||||| || || ||| || | | |||| ||||| Sbjct 235786 TGACGGGTCATTCCTTGATGACGACCAAA-TGGAGAAGGGTTATGTGCTGACATGCGTTT 235844 Query 138707 CATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACT 138760 |||| || || || |||||| | ||| | || | || ||| || || |||| Sbjct 235845 CATATCCAACTTCGGATTGTGTGATTCATACCCACAAGGAGAGTGATCTTTACT 235898 >seq2510 Length=74850 Score = 116 bits (128), Expect = 4e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 179758 GGGCTAGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAA 179817 || || ||||| || || || || ||||| || | || || ||| | ||||| ||| Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941 Query 179818 GATCCTGAGTTCGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTACGTGCT 179877 |||||||| || ||||| ||||| || || || |||||| | || ||||| | |||||| Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881 Query 179878 TGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTACCT 179937 ||| |||| || ||||| || ||||||||| | || ||||| || || || ||||| Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 56821 Query 179938 AGTGGTAAC 179946 |||| ||| Sbjct 56820 CGTGGAAAC 56812 >seq5090 Length=30266 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/136 (75%), Gaps = 9/136 (7%) Strand=Plus/Plus Query 177895 GTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTG 177954 |||||||||||||| | |||| | ||||||| ||| |||||| ||||||||| || | Sbjct 12997 GTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCACCCTTGGATCACTGTTGCATATTCAG 13056 Query 177955 CACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTC 178013 | |||||||||| ||| || ||||| | ||||||| | |||||||| || Sbjct 13057 CTCCTGTTGCAG-------CGCCGT-TTTCTTGATCTATCCAATTGGTCAAGGAAGCTTT 13108 Query 178014 TCCGATGCTATGCCTC 178029 || |||| |||||||| Sbjct 13109 TCTGATGGTATGCCTC 13124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605456965344040