Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq887 105 2e-17
seq94 87.8 4e-12
seq63 86.0 1e-11
seq327 84.2 5e-11
>seq887
Length=362991
Score = 105 bits (116), Expect = 2e-17
Identities = 152/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 279893 CAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCT 279952
||| | |||||| | ||| | | |||||||| || || || || ||| ||||||
Sbjct 262413 CAGAGGAAGATTCTTTTCTGCTCATTCAAAAGGAATTTTGTTAAAGAAGCAAAGGTTGCT 262472
Query 279953 CAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATCATCACGGTGA--AGCGTCTCTTC 280010
||||| ||||||||||||| || ||| | | ||||||||| ||||| | |||| | |
Sbjct 262473 CAGTTCTCAGGTTATGTTTCTGAGCATTCTGCTTATCATCATGGTGAGCAAAGTCT-TGC 262531
Query 280011 AAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATGGCTTCAAACAACTTAAATCTGCTTT 280070
|| || | ||| |||| | || || |||||| ||| | |||||| | || || ||
Sbjct 262532 AA-GTACCATTTTAGGGATGGCACAGGATTTTGTGGGTAGTAACAACATCAACCTTCTCC 262590
Query 280071 CACCAAATGGTCAATTTGGTTCTCGTATTCA 280101
||| |||||||| |||||| |||| | |||
Sbjct 262591 AACCTAATGGTCAGTTTGGTACTCGCAATCA 262621
>seq94
Length=420873
Score = 87.8 bits (96), Expect = 4e-12
Identities = 117/161 (73%), Gaps = 4/161 (2%)
Strand=Plus/Minus
Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389
|| || |||||| | ||||| || ||||||||||| || |||| || | |||||
Sbjct 398351 GTCCTTTTCAATCGCCAACCTAGCCTCCATAAAATGTCAATTATGGGACACAGGATCAAA 398292
Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTG--TACGCCTTATAATGCGG 305447
| | | | ||| ||||| |||||| | || | | | | || || ||||| |
Sbjct 398291 ATCATGCCATACTCGACTTTTCGTTTAAATTT--GTCCGTCACTTCTCCATACAATGCTG 398234
Query 305448 ATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488
|||||||||| |||||||||||||||||||||||||| |||
Sbjct 398233 ATTTTGATGGTGATGAAATGAATATGCATGTACCTCAGTCA 398193
Score = 87.8 bits (96), Expect = 4e-12
Identities = 142/202 (70%), Gaps = 2/202 (1%)
Strand=Plus/Minus
Query 304935 TGCAGGCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTA 304994
|||||||| |||| || ||||| ||||| | || |||| | || |||| | |
Sbjct 398927 TGCAGGCAACTCAGAGGTCTGGAAGACCAATTAAATCTATTTGTAGTCGTCTTAAGGCAA 398868
Query 304995 AAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTG 305054
|||| ||||| ||| |||| ||||||||||||||| | ||||| ||| || ||| |
Sbjct 398867 AAGAAGGTCGAATTAGAGGCAATCTAATGGGAAAAAGAGTTGACTTTTCAGCTCGAACCG 398808
Query 305055 TAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGA-AATTGCT 305113
| || || |||||| | || | || ||||| | ||||| || | || |||||
Sbjct 398807 TTATTACCCCTGATCCCACCATCAACATTGATGAACTTGGAGTGCC-GTGGAGCATTGCC 398749
Query 305114 TTAAAACTAACATTTCCAGAGA 305135
||||| || |||| ||| ||||
Sbjct 398748 TTAAATCTTACATATCCTGAGA 398727
>seq63
Length=475073
Score = 86.0 bits (94), Expect = 1e-11
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 305404 GACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGA 305463
|||||| |||| |||| | || ||||| || |||||||| ||||||||||| |||||
Sbjct 66469 GACATTGAGATTTAATGAATCTGTTTGTAATCCATATAATGCTGATTTTGATGGTGATGA 66410
Query 305464 AATGAATATGCATGTACCTCAATCA 305488
||||||||||||||| || ||| ||
Sbjct 66409 AATGAATATGCATGTCCCACAAACA 66385
>seq327
Length=263289
Score = 84.2 bits (92), Expect = 5e-11
Identities = 113/153 (74%), Gaps = 6/153 (4%)
Strand=Plus/Plus
Query 304986 TTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTG 305045
|||||| || || ||||| ||| |||| || | ||||| ||||| ||||||||| |
Sbjct 117242 TTAAAGCAAAGGAAGGTCGGATTAGAGGAAACTTGATGGGGAAACGAGTTGATTTTTCAG 117301
Query 305046 CAAGAAGTGTAATCACACCTGATTCTCAAATT--AGTCTTCATGAATTAGGAGTTCCAAT 305103
|| ||| || ||||| || ||| | ||||| | | || || || | ||||| ||| |
Sbjct 117302 CACGAACAGTCATCACTCCAGATCC--AAATTTAAATATTGATCAACTTGGAGTGCCA-T 117358
Query 305104 TGAA-ATTGCTTTAAAACTAACATTTCCAGAGA 305135
|| ||||||||||| || |||| ||||||||
Sbjct 117359 GGAGCATTGCTTTAAATCTTACATATCCAGAGA 117391
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186390543503009
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |