Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq887 105 2e-17 seq94 87.8 4e-12 seq63 86.0 1e-11 seq327 84.2 5e-11 >seq887 Length=362991 Score = 105 bits (116), Expect = 2e-17 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 279893 CAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCT 279952 ||| | |||||| | ||| | | |||||||| || || || || ||| |||||| Sbjct 262413 CAGAGGAAGATTCTTTTCTGCTCATTCAAAAGGAATTTTGTTAAAGAAGCAAAGGTTGCT 262472 Query 279953 CAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATCATCACGGTGA--AGCGTCTCTTC 280010 ||||| ||||||||||||| || ||| | | ||||||||| ||||| | |||| | | Sbjct 262473 CAGTTCTCAGGTTATGTTTCTGAGCATTCTGCTTATCATCATGGTGAGCAAAGTCT-TGC 262531 Query 280011 AAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATGGCTTCAAACAACTTAAATCTGCTTT 280070 || || | ||| |||| | || || |||||| ||| | |||||| | || || || Sbjct 262532 AA-GTACCATTTTAGGGATGGCACAGGATTTTGTGGGTAGTAACAACATCAACCTTCTCC 262590 Query 280071 CACCAAATGGTCAATTTGGTTCTCGTATTCA 280101 ||| |||||||| |||||| |||| | ||| Sbjct 262591 AACCTAATGGTCAGTTTGGTACTCGCAATCA 262621 >seq94 Length=420873 Score = 87.8 bits (96), Expect = 4e-12 Identities = 117/161 (73%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 || || |||||| | ||||| || ||||||||||| || |||| || | ||||| Sbjct 398351 GTCCTTTTCAATCGCCAACCTAGCCTCCATAAAATGTCAATTATGGGACACAGGATCAAA 398292 Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTG--TACGCCTTATAATGCGG 305447 | | | | ||| ||||| |||||| | || | | | | || || ||||| | Sbjct 398291 ATCATGCCATACTCGACTTTTCGTTTAAATTT--GTCCGTCACTTCTCCATACAATGCTG 398234 Query 305448 ATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 |||||||||| |||||||||||||||||||||||||| ||| Sbjct 398233 ATTTTGATGGTGATGAAATGAATATGCATGTACCTCAGTCA 398193 Score = 87.8 bits (96), Expect = 4e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 304935 TGCAGGCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTA 304994 |||||||| |||| || ||||| ||||| | || |||| | || |||| | | Sbjct 398927 TGCAGGCAACTCAGAGGTCTGGAAGACCAATTAAATCTATTTGTAGTCGTCTTAAGGCAA 398868 Query 304995 AAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTG 305054 |||| ||||| ||| |||| ||||||||||||||| | ||||| ||| || ||| | Sbjct 398867 AAGAAGGTCGAATTAGAGGCAATCTAATGGGAAAAAGAGTTGACTTTTCAGCTCGAACCG 398808 Query 305055 TAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGA-AATTGCT 305113 | || || |||||| | || | || ||||| | ||||| || | || ||||| Sbjct 398807 TTATTACCCCTGATCCCACCATCAACATTGATGAACTTGGAGTGCC-GTGGAGCATTGCC 398749 Query 305114 TTAAAACTAACATTTCCAGAGA 305135 ||||| || |||| ||| |||| Sbjct 398748 TTAAATCTTACATATCCTGAGA 398727 >seq63 Length=475073 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 305404 GACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGA 305463 |||||| |||| |||| | || ||||| || |||||||| ||||||||||| ||||| Sbjct 66469 GACATTGAGATTTAATGAATCTGTTTGTAATCCATATAATGCTGATTTTGATGGTGATGA 66410 Query 305464 AATGAATATGCATGTACCTCAATCA 305488 ||||||||||||||| || ||| || Sbjct 66409 AATGAATATGCATGTCCCACAAACA 66385 >seq327 Length=263289 Score = 84.2 bits (92), Expect = 5e-11 Identities = 113/153 (74%), Gaps = 6/153 (4%) Strand=Plus/Plus Query 304986 TTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTG 305045 |||||| || || ||||| ||| |||| || | ||||| ||||| ||||||||| | Sbjct 117242 TTAAAGCAAAGGAAGGTCGGATTAGAGGAAACTTGATGGGGAAACGAGTTGATTTTTCAG 117301 Query 305046 CAAGAAGTGTAATCACACCTGATTCTCAAATT--AGTCTTCATGAATTAGGAGTTCCAAT 305103 || ||| || ||||| || ||| | ||||| | | || || || | ||||| ||| | Sbjct 117302 CACGAACAGTCATCACTCCAGATCC--AAATTTAAATATTGATCAACTTGGAGTGCCA-T 117358 Query 305104 TGAA-ATTGCTTTAAAACTAACATTTCCAGAGA 305135 || ||||||||||| || |||| |||||||| Sbjct 117359 GGAGCATTGCTTTAAATCTTACATATCCAGAGA 117391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186390543503009