Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq379 109 4e-19
seq6423 95.1 8e-15
seq5240 95.1 8e-15
seq1068 91.5 1e-13
seq536 91.5 1e-13
seq35 91.5 1e-13
seq1808 89.7 3e-13
seq4991 82.4 5e-11
>seq379
Length=244149
Score = 109 bits (120), Expect = 4e-19
Identities = 165/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| |||| || | |||| ||| || ||| ||| || || || || ||||| |
Sbjct 80273 CCACCCCTCAGGCGCAGAACCAGATGAAGGGTGGACTCCTTCTGGATATTATAATCAGCC 80214
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| || | | ||||||||||||| ||||| |||||||||| ||||||||| || | ||
Sbjct 80213 AAGGTCCTTCCGTCGTCCAATTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGAGGA 80154
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698
| ||| || ||||| |||||| | | ||||| ||| | ||||| ||| ||
Sbjct 80153 ATACCCTCCTTGTCCTGGATTTTC-GCCTTAACATTGTCTATCGTGTCAGAGCT---CTC 80098
Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| |||| || ||||| ||||| |||| ||||| || || ||||||||
Sbjct 80097 GACCTCAAGGGTAATCGTCTTACCAGTTAGGGTTTTCACGAAAATCTGCAT 80047
>seq6423
Length=19511
Score = 95.1 bits (104), Expect = 8e-15
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606
|| || ||| ||| || ||||||||||| |||| ||| || || |||| |||| ||
Sbjct 9847 TGGAGGGTGGACTCCTTCTGTATGTTGTAGTCGGCGAGGGTCCGGCCGTCCTCCAGCTGC 9906
Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666
|| ||||| || |||| |||||||| || | || | ||||| ||||| ||| ||
Sbjct 9907 TTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATCCCTTCCTTGTCCTGAATCTTG 9966
Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725
||| |||| ||| | ||| ||| ||||| || || | || || || || || ||
Sbjct 9967 GCCTTC-ACATTGTCGATGGTATCGGAAGATTCAACTTCGAGGGTAATGGTCTTCCCGGT 10025
Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749
|| ||||| || |||||||||||
Sbjct 10026 TAGGGTTTTCACGAAGATCTGCAT 10049
>seq5240
Length=30785
Score = 95.1 bits (104), Expect = 8e-15
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606
|| || ||| ||| || || ||||| || |||| ||| || || | || ||||| ||
Sbjct 4336 TGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTTCGGCCATCTTCCAACTGC 4277
Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666
||||||||||| |||| ||||||||| || | || | ||||| ||||| || ||
Sbjct 4276 TTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCTTCCTTGTCCTGGATCTT- 4218
Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725
| | || | ||| | ||||||| |||||||| || | ||||| || || || ||
Sbjct 4217 GGCCTTGACGTTGTCGATGGTGTCGGAGGATTCCACCTCCAAGGTGATGGTCTTGCCGGT 4158
Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749
| || || ||||||||||||||
Sbjct 4157 GAGGGTCTTGACAAAGATCTGCAT 4134
>seq1068
Length=260286
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606
|| |||||| ||| || || ||||||||||||| | ||||| |||| || | |||
Sbjct 186289 TGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGCTGT 186348
Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666
|| ||||| || || | ||||||||||| | || | |||||| ||||| || ||
Sbjct 186349 TTCCCGGCGAAGATAAGGCGCTGCTGATCGGGAGGAATACCTTCCTTGTCTTGGATCTT- 186407
Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725
| | || | ||| ||||||||| || || || | |||||| || || || ||
Sbjct 186408 GGCCTTGACGTTGTCTACGGTGTCGGAGCTCTCGACCTCGAGCGTGATTGTCTTGCCGGT 186467
Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749
|| ||||| || |||||||||||
Sbjct 186468 TAGGGTTTTGACGAAGATCTGCAT 186491
>seq536
Length=459343
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/214 (71%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599
||||| || |||||| ||| || || ||||||||||| | ||| || || |||| ||
Sbjct 381883 CACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCGAGGGTCCGGCCGTCCTC 381824
Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659
|| ||||| ||||| || |||| ||||||||| ||| | || | ||||| |||||
Sbjct 381823 CAGCTGTTTCCCGGCGAATATCAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTG 381764
Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCG 33715
|| ||| | || |||| ||| | || || ||| || || || | || || |
Sbjct 381763 GATCTTC-GCTTTGACATTGTCAATCGTATCAGAGCT---CTCGACCTCGAGGGTTATGG 381708
Query 33716 TTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || || || || ||||| || |||||||||||
Sbjct 381707 TCTTCCCAGTCAAAGTTTTGACGAAGATCTGCAT 381674
>seq35
Length=543480
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606
|| || ||| ||| || || |||||||| |||| ||| || || |||| || | ||
Sbjct 477980 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGCCCGTCCTCTAGCTGC 477921
Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666
|||||||| || |||| |||||||| || | || | ||||| ||||| || ||
Sbjct 477920 TTTCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATCCCTTCCTTGTCCTGGATCTTA 477861
Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725
|||| ||| ||| | ||||||| ||||| || || | || || || || || ||
Sbjct 477860 GCCTTCA-CATTGTCGATGGTGTCGGACGATTCAACCTCGAGGGTAATTGTCTTCCCAGT 477802
Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749
|| ||||| || |||||||||||
Sbjct 477801 TAGGGTTTTCACGAAGATCTGCAT 477778
>seq1808
Length=93944
Score = 89.7 bits (98), Expect = 3e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617
||| || || |||||||| |||| ||| || || |||| || | || || || || ||
Sbjct 74452 CTCCTTCTGAATGTTGTAGTCGGCGAGCGTCCGGCCGTCCTCAAGCTGCTTCCCCGCGAA 74393
Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677
||| | |||||||| || |||| | ||| || ||||| || ||| |||| |||
Sbjct 74392 AATGAGCCGCTGCTGGTCCGGCGGAATACCCTCCTTGTCCTGGATCTTCGCCTTCA-CAT 74334
Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736
||| | ||||||| ||||| || || | || || || || || |||| ||||| |
Sbjct 74333 TGTCGATGGTGTCGGAGGATTCGACCTCTAGGGTTATGGTCTTCCCGGTTAGGGTTTTGA 74274
Query 33737 CAAAGATCTGCAT 33749
| |||||||||||
Sbjct 74273 CGAAGATCTGCAT 74261
>seq4991
Length=48504
Score = 82.4 bits (90), Expect = 5e-11
Identities = 149/214 (70%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599
||||||||| || ||| ||| || || |||||||| || | || || | | || ||
Sbjct 9065 CACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCTAGGGTCCTGCCATCCTC 9124
Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659
| ||||| || |||||||| | | |||||||||| | || | || || |||||
Sbjct 9125 AAGCTGTTTACCAGCAAAAATAAGCCTCTGCTGATCTGGAGGGATGCCCTCCTTGTCCTG 9184
Query 33660 AATTTTCTGTTTCAACATAGTCAC-GGTGTC---GCTTGATTCCACGTCAACCGTGATCG 33715
||| || || ||||| |||| ||| || |||| || || |||| ||||| |
Sbjct 9185 AATCTTGGCCTT-AACATTGTCAATGGTATCAGAGCTT---TCAACCTCAAGTGTGATGG 9240
Query 33716 TTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || || || | ||||| ||||||||||||||
Sbjct 9241 TCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 9274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328592755164480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |