Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq379 109 4e-19 seq6423 95.1 8e-15 seq5240 95.1 8e-15 seq1068 91.5 1e-13 seq536 91.5 1e-13 seq35 91.5 1e-13 seq1808 89.7 3e-13 seq4991 82.4 5e-11 >seq379 Length=244149 Score = 109 bits (120), Expect = 4e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | |||| ||| || ||| ||| || || || || ||||| | Sbjct 80273 CCACCCCTCAGGCGCAGAACCAGATGAAGGGTGGACTCCTTCTGGATATTATAATCAGCC 80214 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || | | ||||||||||||| ||||| |||||||||| ||||||||| || | || Sbjct 80213 AAGGTCCTTCCGTCGTCCAATTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGAGGA 80154 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||| || ||||| |||||| | | ||||| ||| | ||||| ||| || Sbjct 80153 ATACCCTCCTTGTCCTGGATTTTC-GCCTTAACATTGTCTATCGTGTCAGAGCT---CTC 80098 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| || ||||| ||||| |||| ||||| || || |||||||| Sbjct 80097 GACCTCAAGGGTAATCGTCTTACCAGTTAGGGTTTTCACGAAAATCTGCAT 80047 >seq6423 Length=19511 Score = 95.1 bits (104), Expect = 8e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || ||||||||||| |||| ||| || || |||| |||| || Sbjct 9847 TGGAGGGTGGACTCCTTCTGTATGTTGTAGTCGGCGAGGGTCCGGCCGTCCTCCAGCTGC 9906 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || |||| |||||||| || | || | ||||| ||||| ||| || Sbjct 9907 TTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATCCCTTCCTTGTCCTGAATCTTG 9966 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 ||| |||| ||| | ||| ||| ||||| || || | || || || || || || Sbjct 9967 GCCTTC-ACATTGTCGATGGTATCGGAAGATTCAACTTCGAGGGTAATGGTCTTCCCGGT 10025 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 || ||||| || ||||||||||| Sbjct 10026 TAGGGTTTTCACGAAGATCTGCAT 10049 >seq5240 Length=30785 Score = 95.1 bits (104), Expect = 8e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || ||||| || |||| ||| || || | || ||||| || Sbjct 4336 TGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTTCGGCCATCTTCCAACTGC 4277 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 ||||||||||| |||| ||||||||| || | || | ||||| ||||| || || Sbjct 4276 TTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCTTCCTTGTCCTGGATCTT- 4218 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | | || | ||| | ||||||| |||||||| || | ||||| || || || || Sbjct 4217 GGCCTTGACGTTGTCGATGGTGTCGGAGGATTCCACCTCCAAGGTGATGGTCTTGCCGGT 4158 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || |||||||||||||| Sbjct 4157 GAGGGTCTTGACAAAGATCTGCAT 4134 >seq1068 Length=260286 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || |||||| ||| || || ||||||||||||| | ||||| |||| || | ||| Sbjct 186289 TGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGCTGT 186348 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | ||||||||||| | || | |||||| ||||| || || Sbjct 186349 TTCCCGGCGAAGATAAGGCGCTGCTGATCGGGAGGAATACCTTCCTTGTCTTGGATCTT- 186407 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | | || | ||| ||||||||| || || || | |||||| || || || || Sbjct 186408 GGCCTTGACGTTGTCTACGGTGTCGGAGCTCTCGACCTCGAGCGTGATTGTCTTGCCGGT 186467 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 || ||||| || ||||||||||| Sbjct 186468 TAGGGTTTTGACGAAGATCTGCAT 186491 >seq536 Length=459343 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || |||||| ||| || || ||||||||||| | ||| || || |||| || Sbjct 381883 CACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCGAGGGTCCGGCCGTCCTC 381824 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || ||||| ||||| || |||| ||||||||| ||| | || | ||||| ||||| Sbjct 381823 CAGCTGTTTCCCGGCGAATATCAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTG 381764 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCG 33715 || ||| | || |||| ||| | || || ||| || || || | || || | Sbjct 381763 GATCTTC-GCTTTGACATTGTCAATCGTATCAGAGCT---CTCGACCTCGAGGGTTATGG 381708 Query 33716 TTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || || ||||| || ||||||||||| Sbjct 381707 TCTTCCCAGTCAAAGTTTTGACGAAGATCTGCAT 381674 >seq35 Length=543480 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| ||| || || |||| || | || Sbjct 477980 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGCCCGTCCTCTAGCTGC 477921 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 |||||||| || |||| |||||||| || | || | ||||| ||||| || || Sbjct 477920 TTTCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATCCCTTCCTTGTCCTGGATCTTA 477861 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 |||| ||| ||| | ||||||| ||||| || || | || || || || || || Sbjct 477860 GCCTTCA-CATTGTCGATGGTGTCGGACGATTCAACCTCGAGGGTAATTGTCTTCCCAGT 477802 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 || ||||| || ||||||||||| Sbjct 477801 TAGGGTTTTCACGAAGATCTGCAT 477778 >seq1808 Length=93944 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| ||| || || |||| || | || || || || || Sbjct 74452 CTCCTTCTGAATGTTGTAGTCGGCGAGCGTCCGGCCGTCCTCAAGCTGCTTCCCCGCGAA 74393 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||| | |||||||| || |||| | ||| || ||||| || ||| |||| ||| Sbjct 74392 AATGAGCCGCTGCTGGTCCGGCGGAATACCCTCCTTGTCCTGGATCTTCGCCTTCA-CAT 74334 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||||||| ||||| || || | || || || || || |||| ||||| | Sbjct 74333 TGTCGATGGTGTCGGAGGATTCGACCTCTAGGGTTATGGTCTTCCCGGTTAGGGTTTTGA 74274 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 74273 CGAAGATCTGCAT 74261 >seq4991 Length=48504 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||||||| || ||| ||| || || |||||||| || | || || | | || || Sbjct 9065 CACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCTAGGGTCCTGCCATCCTC 9124 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | ||||| || |||||||| | | |||||||||| | || | || || ||||| Sbjct 9125 AAGCTGTTTACCAGCAAAAATAAGCCTCTGCTGATCTGGAGGGATGCCCTCCTTGTCCTG 9184 Query 33660 AATTTTCTGTTTCAACATAGTCAC-GGTGTC---GCTTGATTCCACGTCAACCGTGATCG 33715 ||| || || ||||| |||| ||| || |||| || || |||| ||||| | Sbjct 9185 AATCTTGGCCTT-AACATTGTCAATGGTATCAGAGCTT---TCAACCTCAAGTGTGATGG 9240 Query 33716 TTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || | ||||| |||||||||||||| Sbjct 9241 TCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 9274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328592755164480