Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq4991 107 2e-18
seq2451 96.9 3e-15
seq177 95.1 1e-14
seq1057 91.5 1e-13
seq670 84.2 2e-11
seq1034 82.4 7e-11
>seq4991
Length=48504
Score = 107 bits (118), Expect = 2e-18
Identities = 157/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||||| || | ||||||||| | | ||||||| ||||||||||||||||| | | ||
Sbjct 8825 ACGCAGACGGAGAACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCACCAAGTGT 8884
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
||| |||||| ||||| || || | | |||| || | ||| ||||| || || |||||
Sbjct 8885 ACGACCATCTTCAAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGTGGGATGCC 8944
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
||| ||||| |||||| ||| | | || | ||||| | ||||| || |
Sbjct 8945 TTCCTTATCCTGAATTTTGGCTTTGACATTGTCAATGGTATCAGAGCTTTCCACCTCCAA 9004
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | ||||| ||||| || ||||| | || || |||||
Sbjct 9005 AGTGATTGTTTTCCCAGTGAGTGTTTTCACAAAGATTTGCAT 9046
>seq2451
Length=68748
Score = 96.9 bits (106), Expect = 3e-15
Identities = 351/537 (65%), Gaps = 37/537 (7%)
Strand=Plus/Plus
Query 46744 ATGCGTTCGAGCACG-TGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATC 46802
|||| |||| |||| |||| ||||| || ||||| | ||||| | |||||||||
Sbjct 67929 ATGCCATCGA-CACGGTGCCCTGCGTGAAGAAGAAGGCGGATTGGGCTCTCAAGTGGATC 67987
Query 46803 GAGAGCGAGACCGCCACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTG 46862
|| | | ||| | | |||||||| || | || |||| ||| | || |
Sbjct 67988 GACGGTG---CCGAGAGCTTCGCCGAGCGGCTGATAGCGTTCGTTTGCGTCAAGGGGATT 68044
Query 46863 tttttttCGGGCAGTTTTGCCGCCATTTTTTACATTAA-AACCAAAGGCATAATGCCGGG 46921
|| || || || ||||| ||| || || | | || || | ||| ||||||||||
Sbjct 68045 TTCTTCTCCGGGAGTTTCTACGCGATATTCTGGCTGAAGAAGCGCGGGC-TAATGCCGGG 68103
Query 46922 CCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTG 46981
|| || ||| || || ||||||||||| ||||| || |||||| ||||| || ||
Sbjct 68104 ACTCACCTTCTCGAATGAATTGATCTCGCGAGACGAGGGTCTACACTGCGACTTCGCTTG 68163
Query 46982 T---CTCTATTACAAGACGCGCGTGAATGAGAAATTAAACTCGGACACGATCCTGAGCAT 47038
||||| | || || ||| |||| | | || | | | ||
Sbjct 68164 CTTGCTCTACGAACTGAAGC---TGAGTGAGGAG-----------CGCG-TGAAGGGGAT 68208
Query 47039 GTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGC--TGCCCGTCGCC 47096
||||||| |||||| |||||| | ||||||| | |||| ||| ||||| ||||
Sbjct 68209 CATTAGGGACGCGGTGGACATCGAGAGGGAGTTTGTG--TGCGACGCACTGCCCTGCGCC 68266
Query 47097 TTGCTGGGCATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTG 47156
||| |||||||||||| | |||| || | || || ||||| ||||| || | ||
Sbjct 68267 TTGGTGGGCATGAACGGCGACCTTATGAGCCAGTACATCGAGTTCGTGGCAGACTGGTTG 68326
Query 47157 TTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGT----AATCCGTTTGAGTTTAT 47212
||| | ||| || | | | || || | ||| | || || |||||||| | ||
Sbjct 68327 CTGGGGGCGCT-GGGCTGCGGGAAGATAT--ATGGT-GTGGCCAACCCGTTTGACTGGAT 68382
Query 47213 GAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269
| | || ||||| |||| || |||||||| ||||||||| | |||| |||||
Sbjct 68383 GGAGCTGATCTCGCTTCAGGGGAAGACCAATTTCTTCGAGAAAAGGGTCGACGAGTA 68439
>seq177
Length=344453
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987
||||||| || ||||||||||||||| || ||| || || ||||||||||| ||||
Sbjct 68669 TTGACTCCTTCTGAATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGCTGTTTGCCGG 68610
Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047
|||| |||||||| ||||| ||||| || || || || || || || ||||
Sbjct 68609 CGAAGATCAGACGCTGCTGATCCGGAGGAATCCCCTCCTTGTCCTGGATCTTAGCCTTCA 68550
Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107
| || | || |||| ||| || |||| ||| | ||| || || || || || |
Sbjct 68549 CGTTATCAATGGTGTCGGAGCTCTCAACCTCGAGCGTAATCGTCTTCCCCGTGAGGGTCT 68490
Query 132108 TTATGAAAATCTGCATG 132124
| | ||| |||||||||
Sbjct 68489 TGACGAAGATCTGCATG 68473
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/196 (69%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987
||||||| || ||||||||||| ||| || ||| || || ||||||||||| ||||
Sbjct 68441 TTGACTCCTTCTGAATGTTGTAATCGGCCAAGGTGCGGCCGTCCTCGAGCTGTTTGCCGG 68382
Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047
|||| |||||||| ||||| ||||| || || || || || || || || |
Sbjct 68381 CGAAGATCAGACGCTGCTGATCCGGAGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGA 68322
Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107
| || | ||||||| ||| || |||| || | || || || || || ||||
Sbjct 68321 CGTTGTCGATGGTATCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTTT 68262
Query 132108 TTATGAAAATCTGCAT 132123
| | ||| ||||||||
Sbjct 68261 TCACGAAGATCTGCAT 68246
>seq1057
Length=141302
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973
|||||| || | ||||||| || || || ||||||| | | ||| || ||| ||
Sbjct 136514 AACCAAGTGGAGAGTTGACTCCTTCTGGATATTGTAGTGGGCAAGGGTTCGACTATCCTC 136573
Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033
||||||||| || | | ||||||| | ||| ||||||||||| || ||||| || ||
Sbjct 136574 GAGCTGTTTCCCAGCAAAGATTAGCCTCTGCTGATCTGGAGGAATCCCTTCCTTGTCCTG 136633
Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093
||| || ||||| | || | || || | ||||||||| | || | || ||
Sbjct 136634 AATCTTAGCTTTCACGTTGTCAATGGTGTCAGAACTCTCCACTTCCAAGGTGATTGTCTT 136693
Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| |||||||| || | || ||||||||
Sbjct 136694 TCCGGTCAGAGTCTTAACAAAGATCTGCAT 136723
>seq670
Length=332965
Score = 84.2 bits (92), Expect = 2e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| || || |||||||| ||| || |||||| |||||||||||||| ||||
Sbjct 147834 GACTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTCTTCGAGCTGTTTTCCGGCG 147775
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030
|||| || ||||| ||||| ||||| |||||||| || ||
Sbjct 147774 AAGATGAGGCGCTGCTGATCGGGAGGAATGCCTTCCTTGTC 147734
>seq1034
Length=134858
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
|||| ||||| || | | |||||||||| ||||| ||||| || | ||| | | |
Sbjct 72761 CGCAGCACCAAGTGAAGGGTTGACTCTTTCTGAATATTGTAATCTGCAAGGGTCCTCCCA 72702
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
||||| || || ||||||| | |||| || | |||||| ||||| || ||||| || |||
Sbjct 72701 TCTTCAAGTTGCTTACCGGCAAAGATCAGCCTCTGTTGGTCTGGTGGGATGCCCTCCTTA 72642
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| || || || | | || | ||||| | ||| || || | || | |
Sbjct 72641 TCCTGGATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCAACCTCCAAAGTGATC 72582
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| || ||||| || || || | |||||||||||
Sbjct 72581 GTCTTTCCAGTAAGGGTCTTCACAAAAATCTGCAT 72547
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476445762294840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |