Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq4991 107 2e-18 seq2451 96.9 3e-15 seq177 95.1 1e-14 seq1057 91.5 1e-13 seq670 84.2 2e-11 seq1034 82.4 7e-11 >seq4991 Length=48504 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||||||| | | ||||||| ||||||||||||||||| | | || Sbjct 8825 ACGCAGACGGAGAACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCACCAAGTGT 8884 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| |||||| ||||| || || | | |||| || | ||| ||||| || || ||||| Sbjct 8885 ACGACCATCTTCAAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGTGGGATGCC 8944 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| ||||| |||||| ||| | | || | ||||| | ||||| || | Sbjct 8945 TTCCTTATCCTGAATTTTGGCTTTGACATTGTCAATGGTATCAGAGCTTTCCACCTCCAA 9004 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| ||||| || ||||| | || || ||||| Sbjct 9005 AGTGATTGTTTTCCCAGTGAGTGTTTTCACAAAGATTTGCAT 9046 >seq2451 Length=68748 Score = 96.9 bits (106), Expect = 3e-15 Identities = 351/537 (65%), Gaps = 37/537 (7%) Strand=Plus/Plus Query 46744 ATGCGTTCGAGCACG-TGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATC 46802 |||| |||| |||| |||| ||||| || ||||| | ||||| | ||||||||| Sbjct 67929 ATGCCATCGA-CACGGTGCCCTGCGTGAAGAAGAAGGCGGATTGGGCTCTCAAGTGGATC 67987 Query 46803 GAGAGCGAGACCGCCACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTG 46862 || | | ||| | | |||||||| || | || |||| ||| | || | Sbjct 67988 GACGGTG---CCGAGAGCTTCGCCGAGCGGCTGATAGCGTTCGTTTGCGTCAAGGGGATT 68044 Query 46863 tttttttCGGGCAGTTTTGCCGCCATTTTTTACATTAA-AACCAAAGGCATAATGCCGGG 46921 || || || || ||||| ||| || || | | || || | ||| |||||||||| Sbjct 68045 TTCTTCTCCGGGAGTTTCTACGCGATATTCTGGCTGAAGAAGCGCGGGC-TAATGCCGGG 68103 Query 46922 CCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTG 46981 || || ||| || || ||||||||||| ||||| || |||||| ||||| || || Sbjct 68104 ACTCACCTTCTCGAATGAATTGATCTCGCGAGACGAGGGTCTACACTGCGACTTCGCTTG 68163 Query 46982 T---CTCTATTACAAGACGCGCGTGAATGAGAAATTAAACTCGGACACGATCCTGAGCAT 47038 ||||| | || || ||| |||| | | || | | | || Sbjct 68164 CTTGCTCTACGAACTGAAGC---TGAGTGAGGAG-----------CGCG-TGAAGGGGAT 68208 Query 47039 GTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGC--TGCCCGTCGCC 47096 ||||||| |||||| |||||| | ||||||| | |||| ||| ||||| |||| Sbjct 68209 CATTAGGGACGCGGTGGACATCGAGAGGGAGTTTGTG--TGCGACGCACTGCCCTGCGCC 68266 Query 47097 TTGCTGGGCATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTG 47156 ||| |||||||||||| | |||| || | || || ||||| ||||| || | || Sbjct 68267 TTGGTGGGCATGAACGGCGACCTTATGAGCCAGTACATCGAGTTCGTGGCAGACTGGTTG 68326 Query 47157 TTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGT----AATCCGTTTGAGTTTAT 47212 ||| | ||| || | | | || || | ||| | || || |||||||| | || Sbjct 68327 CTGGGGGCGCT-GGGCTGCGGGAAGATAT--ATGGT-GTGGCCAACCCGTTTGACTGGAT 68382 Query 47213 GAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 | | || ||||| |||| || |||||||| ||||||||| | |||| ||||| Sbjct 68383 GGAGCTGATCTCGCTTCAGGGGAAGACCAATTTCTTCGAGAAAAGGGTCGACGAGTA 68439 >seq177 Length=344453 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| || ||||||||||||||| || ||| || || ||||||||||| |||| Sbjct 68669 TTGACTCCTTCTGAATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGCTGTTTGCCGG 68610 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| |||||||| ||||| ||||| || || || || || || || |||| Sbjct 68609 CGAAGATCAGACGCTGCTGATCCGGAGGAATCCCCTCCTTGTCCTGGATCTTAGCCTTCA 68550 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | || |||| ||| || |||| ||| | ||| || || || || || | Sbjct 68549 CGTTATCAATGGTGTCGGAGCTCTCAACCTCGAGCGTAATCGTCTTCCCCGTGAGGGTCT 68490 Query 132108 TTATGAAAATCTGCATG 132124 | | ||| ||||||||| Sbjct 68489 TGACGAAGATCTGCATG 68473 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| || ||||||||||| ||| || ||| || || ||||||||||| |||| Sbjct 68441 TTGACTCCTTCTGAATGTTGTAATCGGCCAAGGTGCGGCCGTCCTCGAGCTGTTTGCCGG 68382 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| |||||||| ||||| ||||| || || || || || || || || | Sbjct 68381 CGAAGATCAGACGCTGCTGATCCGGAGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGA 68322 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | ||||||| ||| || |||| || | || || || || || |||| Sbjct 68321 CGTTGTCGATGGTATCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTTT 68262 Query 132108 TTATGAAAATCTGCAT 132123 | | ||| |||||||| Sbjct 68261 TCACGAAGATCTGCAT 68246 >seq1057 Length=141302 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | ||||||| || || || ||||||| | | ||| || ||| || Sbjct 136514 AACCAAGTGGAGAGTTGACTCCTTCTGGATATTGTAGTGGGCAAGGGTTCGACTATCCTC 136573 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||||||| || | | ||||||| | ||| ||||||||||| || ||||| || || Sbjct 136574 GAGCTGTTTCCCAGCAAAGATTAGCCTCTGCTGATCTGGAGGAATCCCTTCCTTGTCCTG 136633 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || ||||| | || | || || | ||||||||| | || | || || Sbjct 136634 AATCTTAGCTTTCACGTTGTCAATGGTGTCAGAACTCTCCACTTCCAAGGTGATTGTCTT 136693 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||||||| || | || |||||||| Sbjct 136694 TCCGGTCAGAGTCTTAACAAAGATCTGCAT 136723 >seq670 Length=332965 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||| ||| || |||||| |||||||||||||| |||| Sbjct 147834 GACTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTCTTCGAGCTGTTTTCCGGCG 147775 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 |||| || ||||| ||||| ||||| |||||||| || || Sbjct 147774 AAGATGAGGCGCTGCTGATCGGGAGGAATGCCTTCCTTGTC 147734 >seq1034 Length=134858 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | |||||||||| ||||| ||||| || | ||| | | | Sbjct 72761 CGCAGCACCAAGTGAAGGGTTGACTCTTTCTGAATATTGTAATCTGCAAGGGTCCTCCCA 72702 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || || ||||||| | |||| || | |||||| ||||| || ||||| || ||| Sbjct 72701 TCTTCAAGTTGCTTACCGGCAAAGATCAGCCTCTGTTGGTCTGGTGGGATGCCCTCCTTA 72642 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | || | ||||| | ||| || || | || | | Sbjct 72641 TCCTGGATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCAACCTCCAAAGTGATC 72582 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| || || || | ||||||||||| Sbjct 72581 GTCTTTCCAGTAAGGGTCTTCACAAAAATCTGCAT 72547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476445762294840