Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq318 340 3e-87
seq715 315 1e-79
seq2451 118 2e-20
>seq318
Length=266665
Score = 340 bits (376), Expect = 3e-87
Identities = 408/545 (75%), Gaps = 12/545 (2%)
Strand=Plus/Minus
Query 1455734 AACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCA 1455792
||||| ||||||| ||| ||||||| |||| |||| | || ||||| |||||| |
Sbjct 56472 AACCCAGACCGCTTCTGTA-TGTTCCCGATCCAGTACCCCCAAATCTGGGAGATGTAC-A 56415
Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC 1455852
| ||||| ||||||||||| ||||| || ||||||||||||||| | ||| ||
Sbjct 56414 AGAAGGCTGAGGCCTCCTTCTGGACTGCTGAGGAGGTCGACCTCTCCCAGGACCTCCGCC 56355
Query 1455853 ACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTC 1455912
|||||| || || | ||| | |||||||||||| |||| ||||||||||| ||| |||
Sbjct 56354 ACTGGGACTCCCTCACCGATGGCGAGCGCCATTTTATCACCCACGTCCTCGC-TTTCTTC 56296
Query 1455913 GCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAA 1455972
|||||| ||| || ||||| ||||||||| || | ||||| ||||| ||||||||
Sbjct 56295 GCCGCCTCCGACGGAATCGTCCTCGAGAACCTTGCTGCTCGCTTCATGAAGGAGGTCCAG 56236
Query 1455973 TTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAA 1456032
| | || || || || || || |||||||||||||| || ||||| ||||| ||
Sbjct 56235 GTCGCGGAAGCCCGAGCCTTCTATGGCTTCCAGATCGCCATTGAGAACATTCACTCCGAG 56176
Query 1456033 ACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTT 1456092
| ||| ||||| |||| ||||| |||||||| | | |||||| || | |||||
Sbjct 56175 ATGTACAGCCTCCTCCTCGAGACCTATATCAAGGACTCCGATGAGAAGAACAAACTCTTC 56116
Query 1456093 CGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC 1456152
| |||||||||| |||||| | |||| ||| ||||| || ||||| | |||||||||
Sbjct 56115 CATGCCATCGACATGGTGCCCTGCGTGAAGAAGAAGGCGGATTGGGCTCTCAAGTGGATC 56056
Query 1456153 AACAAGGAGG-GCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGC 1456210
|| || ||| || ||| ||||||||||| ||| || || ||||||||||
Sbjct 56055 -----GGCGGTGCCGAGA-GCTTCGCCGAGCGGCTGATCGCGTTCGCTTGCGTCGAGGGG 56002
Query 1456211 ATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCC 1456270
|| || ||||| || ||||||||||| || || ||||| ||||||||||| || |||||
Sbjct 56001 ATTTTCTTCTCCGGGAGTTTCTGCGCGATATTCTGGCTGAAGAAGCGCGGGCTAATGCCG 55942
Query 1456271 GGTCT 1456275
|| ||
Sbjct 55941 GGACT 55937
Score = 138 bits (152), Expect = 2e-26
Identities = 180/244 (74%), Gaps = 4/244 (2%)
Strand=Plus/Minus
Query 1456532 GAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGGC 1456591
|| || || || ||||||| |||||||| |||| |||||||| || | | |||
Sbjct 55818 GATGCGGTGGACATCGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTGCGCCTTGGTGGGC 55759
Query 1456592 ATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGG 1456651
||||||| | | || ||| |||||||||| || || || || || ||| |||| | ||
Sbjct 55758 ATGAACGGCGAC-CTTATGAGCCAGTACATCGAGTTC-GTGGCAGATCGCTTGCTGGGGG 55701
Query 1456652 CGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATC 1456711
||||||||||||| |||| ||| | |||||||||||| ||||||||| |||||
Sbjct 55700 CGCTCGGCTGCGG-GAAGATATACGGTGTGGCCAACCCGTTTGACTGGATGGAGCTGATC 55642
Query 1456712 TCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCCAAGGCCGGC 1456770
||||| |||| |||||||| || |||||| | || ||||||||| ||||| |
Sbjct 55641 TCGCTTCAGGGGAAGACCAATTTCTTCGAGAAAAGGGTCGGCGAGTACCAGAAGGCAGCG 55582
Query 1456771 GTCA 1456774
||||
Sbjct 55581 GTCA 55578
>seq715
Length=381403
Score = 315 bits (348), Expect = 1e-79
Identities = 391/528 (74%), Gaps = 8/528 (2%)
Strand=Plus/Minus
Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793
||||| | ||||| | ||||||| |||| |||| | || ||||| |||||| ||
Sbjct 115839 AACCCAGATCGCTTCTGCATGTTCCCGATCCAATACCCGGAAATCTGGGAGATGTAC-AA 115781
Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCA 1455853
||||| ||||||||||| ||||| ||||||||||||||| | | ||| ||
Sbjct 115780 GAAGGCAGAGGCCTCCTTCTGGACAGCCGAGGAGGTCGACTTGTCCCAGGACCTCCCTCA 115721
Query 1455854 CTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCG 1455913
|||| || || | || ||||||||||| ||||||| ||||||||||| || || ||
Sbjct 115720 CTGGAACTCTCTCACCGCTGACGAGCGCCACTTCATCACCCACGTCCTCGCATTCTT-CG 115662
Query 1455914 CCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAAT 1455973
||||| |||||||||||| ||| || || ||||| | || ||||| ||| ||||
Sbjct 115661 CCGCCTCCGATGGCATCGTCCTCGAAAATCTCGCCGGAAGGTTCATGAAGGAGATCCAGG 115602
Query 1455974 TGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAA 1456033
|| | ||||| ||| || ||||| ||||||||||||||||| ||||| |||||||| |
Sbjct 115601 TGGCGGAGGCTCGTGCCTTATACGGCTTCCAGATCGCCATCGAGAACATTCACTCTGAGA 115542
Query 1456034 CCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTC 1456093
|| |||||| |||| |||||||||||||| | |||||| || | ||||| |
Sbjct 115541 TGTATAGTCTCCTGCTCGAAACCTACGTCAAGGATTCCAATGAGAAGAACAAACTCTTCC 115482
Query 1456094 GCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCA 1456153
||||||||| |||||||||| || ||| ||||| || |||||| |||| ||||||
Sbjct 115481 ACGCCATCGAAACGGTGCCGTGCGTCCAGAAGAAGGCTGAGTGGGCGCTGAAATGGATCG 115422
Query 1456154 ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCAT 1456212
|| ||| || | | || || ||||||||| ||| || || |||| ||||| ||
Sbjct 115421 AC--GGA--TCCAAGTC-GTTCGCGGAGCGGCTCCTCGCGTTCGCTTGCGTGGAGGGGAT 115367
Query 1456213 CTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGG 1456260
|| ||||| || || |||||||| || |||||| | || ||||| ||
Sbjct 115366 TTTCTTCTCTGGAAGCTTCTGCGCGATATTTTGGTTGAAAAAGCGGGG 115319
>seq2451
Length=68748
Score = 118 bits (130), Expect = 2e-20
Identities = 149/202 (74%), Gaps = 6/202 (3%)
Strand=Plus/Plus
Query 1456075 GAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGAC 1456134
|||||| || | |||| | ||||||||||||||||| | |||| ||| ||||| ||
Sbjct 67910 GAGAAGAACAAACTCTCCCATGCCATCGACACGGTGCCCTGCGTGAAGAAGAAGGCGGAT 67969
Query 1456135 TGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCT 1456194
||||| | ||||||||| || | ||| || ||| ||||||||||| | | |
Sbjct 67970 TGGGCTCTCAAGTGGATCGACG----GTGCCGAGAG-CTTCGCCGAGCGGCTGATAGCGT 68024
Query 1456195 TTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGA 1456253
| | ||||| |||| || || ||||| || ||||||| ||| || || ||||| ||||
Sbjct 68025 TCGTTTGCGTCAAGGGGATTTTCTTCTCCGGGAGTTTCTACGCGATATTCTGGCTGAAGA 68084
Query 1456254 AGCGCGGCCTCATGCCCGGTCT 1456275
||||||| || ||||| || ||
Sbjct 68085 AGCGCGGGCTAATGCCGGGACT 68106
Score = 111 bits (122), Expect = 2e-18
Identities = 153/210 (73%), Gaps = 3/210 (1%)
Strand=Plus/Plus
Query 1456532 GAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGGC 1456591
|| || || || ||||||| |||||||| |||| | ||||| || | | |||
Sbjct 68216 GACGCGGTGGACATCGAGAGGGAGTTTGTGTGCGACGCACTGCCCTGCGCCTTGGTGGGC 68275
Query 1456592 ATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGG 1456651
||||||| | | || ||| |||||||||| || || || || ||| | |||| | ||
Sbjct 68276 ATGAACGGCGAC-CTTATGAGCCAGTACATCGAGTTC-GTGGCAGACTGGTTGCTGGGGG 68333
Query 1456652 CGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATC 1456711
|||| |||||||| |||| || | |||||||||||| ||||||||| |||||
Sbjct 68334 CGCTGGGCTGCGG-GAAGATATATGGTGTGGCCAACCCGTTTGACTGGATGGAGCTGATC 68392
Query 1456712 TCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741
||||| |||| |||||||| || ||||||
Sbjct 68393 TCGCTTCAGGGGAAGACCAATTTCTTCGAG 68422
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7175132828910578
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |