Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq318 340 3e-87 seq715 315 1e-79 seq2451 118 2e-20 >seq318 Length=266665 Score = 340 bits (376), Expect = 3e-87 Identities = 408/545 (75%), Gaps = 12/545 (2%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCA 1455792 ||||| ||||||| ||| ||||||| |||| |||| | || ||||| |||||| | Sbjct 56472 AACCCAGACCGCTTCTGTA-TGTTCCCGATCCAGTACCCCCAAATCTGGGAGATGTAC-A 56415 Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC 1455852 | ||||| ||||||||||| ||||| || ||||||||||||||| | ||| || Sbjct 56414 AGAAGGCTGAGGCCTCCTTCTGGACTGCTGAGGAGGTCGACCTCTCCCAGGACCTCCGCC 56355 Query 1455853 ACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTC 1455912 |||||| || || | ||| | |||||||||||| |||| ||||||||||| ||| ||| Sbjct 56354 ACTGGGACTCCCTCACCGATGGCGAGCGCCATTTTATCACCCACGTCCTCGC-TTTCTTC 56296 Query 1455913 GCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAA 1455972 |||||| ||| || ||||| ||||||||| || | ||||| ||||| |||||||| Sbjct 56295 GCCGCCTCCGACGGAATCGTCCTCGAGAACCTTGCTGCTCGCTTCATGAAGGAGGTCCAG 56236 Query 1455973 TTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAA 1456032 | | || || || || || || |||||||||||||| || ||||| ||||| || Sbjct 56235 GTCGCGGAAGCCCGAGCCTTCTATGGCTTCCAGATCGCCATTGAGAACATTCACTCCGAG 56176 Query 1456033 ACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTT 1456092 | ||| ||||| |||| ||||| |||||||| | | |||||| || | ||||| Sbjct 56175 ATGTACAGCCTCCTCCTCGAGACCTATATCAAGGACTCCGATGAGAAGAACAAACTCTTC 56116 Query 1456093 CGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC 1456152 | |||||||||| |||||| | |||| ||| ||||| || ||||| | ||||||||| Sbjct 56115 CATGCCATCGACATGGTGCCCTGCGTGAAGAAGAAGGCGGATTGGGCTCTCAAGTGGATC 56056 Query 1456153 AACAAGGAGG-GCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGC 1456210 || || ||| || ||| ||||||||||| ||| || || |||||||||| Sbjct 56055 -----GGCGGTGCCGAGA-GCTTCGCCGAGCGGCTGATCGCGTTCGCTTGCGTCGAGGGG 56002 Query 1456211 ATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCC 1456270 || || ||||| || ||||||||||| || || ||||| ||||||||||| || ||||| Sbjct 56001 ATTTTCTTCTCCGGGAGTTTCTGCGCGATATTCTGGCTGAAGAAGCGCGGGCTAATGCCG 55942 Query 1456271 GGTCT 1456275 || || Sbjct 55941 GGACT 55937 Score = 138 bits (152), Expect = 2e-26 Identities = 180/244 (74%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 1456532 GAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGGC 1456591 || || || || ||||||| |||||||| |||| |||||||| || | | ||| Sbjct 55818 GATGCGGTGGACATCGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTGCGCCTTGGTGGGC 55759 Query 1456592 ATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGG 1456651 ||||||| | | || ||| |||||||||| || || || || || ||| |||| | || Sbjct 55758 ATGAACGGCGAC-CTTATGAGCCAGTACATCGAGTTC-GTGGCAGATCGCTTGCTGGGGG 55701 Query 1456652 CGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATC 1456711 ||||||||||||| |||| ||| | |||||||||||| ||||||||| ||||| Sbjct 55700 CGCTCGGCTGCGG-GAAGATATACGGTGTGGCCAACCCGTTTGACTGGATGGAGCTGATC 55642 Query 1456712 TCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCCAAGGCCGGC 1456770 ||||| |||| |||||||| || |||||| | || ||||||||| ||||| | Sbjct 55641 TCGCTTCAGGGGAAGACCAATTTCTTCGAGAAAAGGGTCGGCGAGTACCAGAAGGCAGCG 55582 Query 1456771 GTCA 1456774 |||| Sbjct 55581 GTCA 55578 >seq715 Length=381403 Score = 315 bits (348), Expect = 1e-79 Identities = 391/528 (74%), Gaps = 8/528 (2%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 ||||| | ||||| | ||||||| |||| |||| | || ||||| |||||| || Sbjct 115839 AACCCAGATCGCTTCTGCATGTTCCCGATCCAATACCCGGAAATCTGGGAGATGTAC-AA 115781 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCA 1455853 ||||| ||||||||||| ||||| ||||||||||||||| | | ||| || Sbjct 115780 GAAGGCAGAGGCCTCCTTCTGGACAGCCGAGGAGGTCGACTTGTCCCAGGACCTCCCTCA 115721 Query 1455854 CTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCG 1455913 |||| || || | || ||||||||||| ||||||| ||||||||||| || || || Sbjct 115720 CTGGAACTCTCTCACCGCTGACGAGCGCCACTTCATCACCCACGTCCTCGCATTCTT-CG 115662 Query 1455914 CCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAAT 1455973 ||||| |||||||||||| ||| || || ||||| | || ||||| ||| |||| Sbjct 115661 CCGCCTCCGATGGCATCGTCCTCGAAAATCTCGCCGGAAGGTTCATGAAGGAGATCCAGG 115602 Query 1455974 TGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAA 1456033 || | ||||| ||| || ||||| ||||||||||||||||| ||||| |||||||| | Sbjct 115601 TGGCGGAGGCTCGTGCCTTATACGGCTTCCAGATCGCCATCGAGAACATTCACTCTGAGA 115542 Query 1456034 CCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTC 1456093 || |||||| |||| |||||||||||||| | |||||| || | ||||| | Sbjct 115541 TGTATAGTCTCCTGCTCGAAACCTACGTCAAGGATTCCAATGAGAAGAACAAACTCTTCC 115482 Query 1456094 GCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCA 1456153 ||||||||| |||||||||| || ||| ||||| || |||||| |||| |||||| Sbjct 115481 ACGCCATCGAAACGGTGCCGTGCGTCCAGAAGAAGGCTGAGTGGGCGCTGAAATGGATCG 115422 Query 1456154 ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCAT 1456212 || ||| || | | || || ||||||||| ||| || || |||| ||||| || Sbjct 115421 AC--GGA--TCCAAGTC-GTTCGCGGAGCGGCTCCTCGCGTTCGCTTGCGTGGAGGGGAT 115367 Query 1456213 CTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGG 1456260 || ||||| || || |||||||| || |||||| | || ||||| || Sbjct 115366 TTTCTTCTCTGGAAGCTTCTGCGCGATATTTTGGTTGAAAAAGCGGGG 115319 >seq2451 Length=68748 Score = 118 bits (130), Expect = 2e-20 Identities = 149/202 (74%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 1456075 GAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGAC 1456134 |||||| || | |||| | ||||||||||||||||| | |||| ||| ||||| || Sbjct 67910 GAGAAGAACAAACTCTCCCATGCCATCGACACGGTGCCCTGCGTGAAGAAGAAGGCGGAT 67969 Query 1456135 TGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCT 1456194 ||||| | ||||||||| || | ||| || ||| ||||||||||| | | | Sbjct 67970 TGGGCTCTCAAGTGGATCGACG----GTGCCGAGAG-CTTCGCCGAGCGGCTGATAGCGT 68024 Query 1456195 TTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGA 1456253 | | ||||| |||| || || ||||| || ||||||| ||| || || ||||| |||| Sbjct 68025 TCGTTTGCGTCAAGGGGATTTTCTTCTCCGGGAGTTTCTACGCGATATTCTGGCTGAAGA 68084 Query 1456254 AGCGCGGCCTCATGCCCGGTCT 1456275 ||||||| || ||||| || || Sbjct 68085 AGCGCGGGCTAATGCCGGGACT 68106 Score = 111 bits (122), Expect = 2e-18 Identities = 153/210 (73%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 1456532 GAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGGC 1456591 || || || || ||||||| |||||||| |||| | ||||| || | | ||| Sbjct 68216 GACGCGGTGGACATCGAGAGGGAGTTTGTGTGCGACGCACTGCCCTGCGCCTTGGTGGGC 68275 Query 1456592 ATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGG 1456651 ||||||| | | || ||| |||||||||| || || || || ||| | |||| | || Sbjct 68276 ATGAACGGCGAC-CTTATGAGCCAGTACATCGAGTTC-GTGGCAGACTGGTTGCTGGGGG 68333 Query 1456652 CGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATC 1456711 |||| |||||||| |||| || | |||||||||||| ||||||||| ||||| Sbjct 68334 CGCTGGGCTGCGG-GAAGATATATGGTGTGGCCAACCCGTTTGACTGGATGGAGCTGATC 68392 Query 1456712 TCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 ||||| |||| |||||||| || |||||| Sbjct 68393 TCGCTTCAGGGGAAGACCAATTTCTTCGAG 68422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175132828910578