Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_026923.1
Length=179110
Score E
Sequences producing significant alignments: (Bits) Value
seq752 408 5e-109
seq1263 347 1e-90
seq2510 152 6e-32
seq37 125 8e-24
seq587 104 3e-17
seq5090 87.8 2e-12
>seq752
Length=193215
Score = 408 bits (452), Expect = 5e-109
Identities = 498/671 (74%), Gaps = 10/671 (1%)
Strand=Plus/Minus
Query 159456 TGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTTATCACGAGTTGGTACAC 159515
||| ||| | || | || || ||| |||| || || || ||| | || ||||| ||
Sbjct 189601 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 189542
Query 159516 CCACGGTCTTGCTAGTTCCTACCTTGAAGG-TGCTAATTTTCTCACGGCAGCTGTCTCAA 159574
|| || | ||||||||||| | ||||| ||| ||||| | || || || || || |
Sbjct 189541 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTTCGA 189483
Query 159575 CGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGCG 159634
| ||||| || | | | ||||| | | |||| || |||||||| | ||||| |
Sbjct 189482 CTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGAAGCCCAAGGAG 189423
Query 159635 ACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTTGCTCTCCACGGTGCAT 159694
| || || ||||||||| | || || | ||| | ||||||||||||||||| | |
Sbjct 189422 ATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCACTT 189363
Query 159695 TCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCG-TCTAGTTGGTATCCGT 159753
||| || |||||||||||| |||| ||| ||||| ||||||| ||| ||| | ||
Sbjct 189362 TCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCT-GTTCAATTGCGA 189304
Query 159754 CCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCTTATC 159813
||||| ||||| || || ||||||| ||| |||||||||||||| |||||||| ||
Sbjct 189303 CCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATT 189244
Query 159814 TATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTT 159873
|||||||| ||||||||| ||||||||||| || ||||| || ||||| || || |||
Sbjct 189243 TATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTT 189184
Query 159874 AGATTC---CTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATG 159930
||||| || || |||| |||||||| | || ||||| | ||||| || ||||||
Sbjct 189183 CGATTCATCCTTTTTTTCCA--AGGGTTTC-ATAATTGGACATTGAACCCATTTCATATG 189127
Query 159931 ATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTGTA 159990
||||||||||| ||| || | || | || ||| | || || ||||||||||||||||||
Sbjct 189126 ATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGTA 189067
Query 159991 GAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTACT 160050
|| || || || ||||||||||| || ||||| ||||| |||||| | || ||
Sbjct 189066 GAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACC 189007
Query 160051 CAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGT 160110
|||| ||||| |||||||| |||||||| || |||||||| ||||| || ||||| ||
Sbjct 189006 CAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGG 188947
Query 160111 GTTGCATTTTC 160121
||||| |||||
Sbjct 188946 GTTGCTTTTTC 188936
>seq1263
Length=120960
Score = 347 bits (384), Expect = 1e-90
Identities = 431/582 (74%), Gaps = 10/582 (2%)
Strand=Plus/Plus
Query 159456 TGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTTATCACGAGTTGGTACAC 159515
||| ||| | || | || || ||| |||| || || || ||| | || ||||| ||
Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865
Query 159516 CCACGGTCTTGCTAGTTCCTACCTTGAAGG-TGCTAATTTTCTCACGGCAGCTGTCTCAA 159574
|| || | ||||||||||| | ||||| ||| ||||| | || || || || || |
Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTTCGA 54924
Query 159575 CGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGCG 159634
| ||||| || | | | ||||| | | |||| ||||||||||| | ||||| |
Sbjct 54925 CTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGAG 54984
Query 159635 ACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTTGCTCTCCACGGTGCAT 159694
| || || ||||||||| | || || | ||| | ||||||||||||||||| || |
Sbjct 54985 ATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCTT 55044
Query 159695 TCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTC-GTCTAGTTGGTATCCGT 159753
||| || |||||||||||| |||| ||||||||| |||||| |||| ||| | ||
Sbjct 55045 TCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCT-GTTCAATTGCGA 55103
Query 159754 CCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCTTATC 159813
||||| ||||| || || ||||||| ||| |||||||||||||| |||||||| ||
Sbjct 55104 CCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATT 55163
Query 159814 TATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTT 159873
|||||||| ||||||||| ||||||||||| || ||||| || ||||| || || |||
Sbjct 55164 TATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTT 55223
Query 159874 AGAT---TCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATG 159930
||| |||| || |||| ||||||| || || ||||| | ||||| || ||||||
Sbjct 55224 CGATTCATCCTTTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCATTTCATATG 55280
Query 159931 ATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTGTA 159990
||||||||||| ||| || | || | || ||| | || || ||||||||||||| ||||
Sbjct 55281 ATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTA 55340
Query 159991 GAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTT 160032
|| || || || ||||||||||| || ||||| ||||||
Sbjct 55341 GAAAATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382
>seq2510
Length=74850
Score = 152 bits (168), Expect = 6e-32
Identities = 141/179 (79%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 160198 GGTCTTGCTTTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAA 160257
||||| ||| | ||||| || || || || ||| | ||||| || | ||||| |||
Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941
Query 160258 GATCCTGAATTTGAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCT 160317
||||||||||||||||| ||||||||||| || || || || || ||||| ||||||||
Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881
Query 160318 TGGATGGCACCTGCTGATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACC 160376
|||||||| || ||||| || ||||||||| |||| ||||||||||| || |||||
Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 56822
>seq37
Length=530226
Score = 125 bits (138), Expect = 8e-24
Identities = 193/274 (70%), Gaps = 1/274 (0%)
Strand=Plus/Plus
Query 160000 TTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTACTCAAGAAGAA 160059
|| ||||||||||| || || || |||||| |||||| | || || |||| | |
Sbjct 49815 TTATTTGAAGATGGTGATTGTGCTAATACATTTTGTGCGTTTAATCCAACCCAAGTTGGA 49874
Query 160060 GAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCATTT 160119
|| |||||||| |||||||| || |||||||| ||||| || ||||| || ||| |||
Sbjct 49875 GAAACTTATTCAATGGTCACCGCTAACCGCTT-TGGTCCCAAATCTTTGGGGTTTTTTTT 49933
Query 160120 TCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACA 160179
|| || || | ||| | |||||||| |||| ||||| | || | ||| ||||||
Sbjct 49934 TCCAATAAATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACCGGTTTATGGATG 49993
Query 160180 TCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTTCGTGCTTACGATTTCGTGAGTCAG 160239
|| | | | | ||||| ||||| ||||| || | || | ||||| ||
Sbjct 49994 AGAGCTCCTAGAGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGCTTCGTTTCCCAA 50053
Query 160240 GAGATTAGAGCAGCAGAAGATCCTGAATTTGAGA 160273
|| || | ||||| ||||||||||||||| |||
Sbjct 50054 GAAATCTGTGCAGCGGAAGATCCTGAATTTAAGA 50087
>seq587
Length=401750
Score = 104 bits (114), Expect = 3e-17
Identities = 120/162 (74%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 158501 ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 158560
|| ||||| |||||||| || |||||||| |||||||| || | ||||| |||| |||
Sbjct 44409 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGT 44468
Query 158561 CGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATG 158620
||||| | || || | || ||| | | || | | | ||||||||||||||||||
Sbjct 44469 CGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAGTTATG 44528
Query 158621 CATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCT 158662
||||| | ||| | || ||||| || |||| || ||||||
Sbjct 44529 CATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570
>seq5090
Length=30266
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/135 (75%), Gaps = 7/135 (5%)
Strand=Plus/Plus
Query 158013 GTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTG 158072
||||||||||||| || |||||| ||||||| ||| |||||| ||| |||||||| |
Sbjct 12997 GTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCACCCTTGGATCACTGTTGCATATTCAG 13056
Query 158073 CTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCT 158132
|||| || |||||| || || ||| | ||||||| | |||||||| || |
Sbjct 13057 CTCCTGT---TGCAGC----GCCGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTT 13109
Query 158133 CCGATGCTATGCCTC 158147
| |||| ||||||||
Sbjct 13110 CTGATGGTATGCCTC 13124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 572825096206800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |