Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq752 408 5e-109 seq1263 347 1e-90 seq2510 152 6e-32 seq37 125 8e-24 seq587 104 3e-17 seq5090 87.8 2e-12 >seq752 Length=193215 Score = 408 bits (452), Expect = 5e-109 Identities = 498/671 (74%), Gaps = 10/671 (1%) Strand=Plus/Minus Query 159456 TGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTTATCACGAGTTGGTACAC 159515 ||| ||| | || | || || ||| |||| || || || ||| | || ||||| || Sbjct 189601 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 189542 Query 159516 CCACGGTCTTGCTAGTTCCTACCTTGAAGG-TGCTAATTTTCTCACGGCAGCTGTCTCAA 159574 || || | ||||||||||| | ||||| ||| ||||| | || || || || || | Sbjct 189541 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTTCGA 189483 Query 159575 CGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGCG 159634 | ||||| || | | | ||||| | | |||| || |||||||| | ||||| | Sbjct 189482 CTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGAAGCCCAAGGAG 189423 Query 159635 ACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTTGCTCTCCACGGTGCAT 159694 | || || ||||||||| | || || | ||| | ||||||||||||||||| | | Sbjct 189422 ATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCACTT 189363 Query 159695 TCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCG-TCTAGTTGGTATCCGT 159753 ||| || |||||||||||| |||| ||| ||||| ||||||| ||| ||| | || Sbjct 189362 TCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCT-GTTCAATTGCGA 189304 Query 159754 CCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCTTATC 159813 ||||| ||||| || || ||||||| ||| |||||||||||||| |||||||| || Sbjct 189303 CCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATT 189244 Query 159814 TATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTT 159873 |||||||| ||||||||| ||||||||||| || ||||| || ||||| || || ||| Sbjct 189243 TATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTT 189184 Query 159874 AGATTC---CTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATG 159930 ||||| || || |||| |||||||| | || ||||| | ||||| || |||||| Sbjct 189183 CGATTCATCCTTTTTTTCCA--AGGGTTTC-ATAATTGGACATTGAACCCATTTCATATG 189127 Query 159931 ATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTGTA 159990 ||||||||||| ||| || | || | || ||| | || || |||||||||||||||||| Sbjct 189126 ATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGTA 189067 Query 159991 GAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTACT 160050 || || || || ||||||||||| || ||||| ||||| |||||| | || || Sbjct 189066 GAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACC 189007 Query 160051 CAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGT 160110 |||| ||||| |||||||| |||||||| || |||||||| ||||| || ||||| || Sbjct 189006 CAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGG 188947 Query 160111 GTTGCATTTTC 160121 ||||| ||||| Sbjct 188946 GTTGCTTTTTC 188936 >seq1263 Length=120960 Score = 347 bits (384), Expect = 1e-90 Identities = 431/582 (74%), Gaps = 10/582 (2%) Strand=Plus/Plus Query 159456 TGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTTATCACGAGTTGGTACAC 159515 ||| ||| | || | || || ||| |||| || || || ||| | || ||||| || Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865 Query 159516 CCACGGTCTTGCTAGTTCCTACCTTGAAGG-TGCTAATTTTCTCACGGCAGCTGTCTCAA 159574 || || | ||||||||||| | ||||| ||| ||||| | || || || || || | Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTTCGA 54924 Query 159575 CGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGCG 159634 | ||||| || | | | ||||| | | |||| ||||||||||| | ||||| | Sbjct 54925 CTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGAG 54984 Query 159635 ACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTTGCTCTCCACGGTGCAT 159694 | || || ||||||||| | || || | ||| | ||||||||||||||||| || | Sbjct 54985 ATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCTT 55044 Query 159695 TCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTC-GTCTAGTTGGTATCCGT 159753 ||| || |||||||||||| |||| ||||||||| |||||| |||| ||| | || Sbjct 55045 TCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCT-GTTCAATTGCGA 55103 Query 159754 CCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCTTATC 159813 ||||| ||||| || || ||||||| ||| |||||||||||||| |||||||| || Sbjct 55104 CCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATT 55163 Query 159814 TATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTT 159873 |||||||| ||||||||| ||||||||||| || ||||| || ||||| || || ||| Sbjct 55164 TATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTT 55223 Query 159874 AGAT---TCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATG 159930 ||| |||| || |||| ||||||| || || ||||| | ||||| || |||||| Sbjct 55224 CGATTCATCCTTTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCATTTCATATG 55280 Query 159931 ATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTGTA 159990 ||||||||||| ||| || | || | || ||| | || || ||||||||||||| |||| Sbjct 55281 ATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTA 55340 Query 159991 GAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTT 160032 || || || || ||||||||||| || ||||| |||||| Sbjct 55341 GAAAATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382 >seq2510 Length=74850 Score = 152 bits (168), Expect = 6e-32 Identities = 141/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 160198 GGTCTTGCTTTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAA 160257 ||||| ||| | ||||| || || || || ||| | ||||| || | ||||| ||| Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941 Query 160258 GATCCTGAATTTGAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCT 160317 ||||||||||||||||| ||||||||||| || || || || || ||||| |||||||| Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881 Query 160318 TGGATGGCACCTGCTGATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACC 160376 |||||||| || ||||| || ||||||||| |||| ||||||||||| || ||||| Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 56822 >seq37 Length=530226 Score = 125 bits (138), Expect = 8e-24 Identities = 193/274 (70%), Gaps = 1/274 (0%) Strand=Plus/Plus Query 160000 TTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTACTCAAGAAGAA 160059 || ||||||||||| || || || |||||| |||||| | || || |||| | | Sbjct 49815 TTATTTGAAGATGGTGATTGTGCTAATACATTTTGTGCGTTTAATCCAACCCAAGTTGGA 49874 Query 160060 GAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCATTT 160119 || |||||||| |||||||| || |||||||| ||||| || ||||| || ||| ||| Sbjct 49875 GAAACTTATTCAATGGTCACCGCTAACCGCTT-TGGTCCCAAATCTTTGGGGTTTTTTTT 49933 Query 160120 TCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACA 160179 || || || | ||| | |||||||| |||| ||||| | || | ||| |||||| Sbjct 49934 TCCAATAAATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACCGGTTTATGGATG 49993 Query 160180 TCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTTCGTGCTTACGATTTCGTGAGTCAG 160239 || | | | | ||||| ||||| ||||| || | || | ||||| || Sbjct 49994 AGAGCTCCTAGAGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGCTTCGTTTCCCAA 50053 Query 160240 GAGATTAGAGCAGCAGAAGATCCTGAATTTGAGA 160273 || || | ||||| ||||||||||||||| ||| Sbjct 50054 GAAATCTGTGCAGCGGAAGATCCTGAATTTAAGA 50087 >seq587 Length=401750 Score = 104 bits (114), Expect = 3e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 158501 ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 158560 || ||||| |||||||| || |||||||| |||||||| || | ||||| |||| ||| Sbjct 44409 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGT 44468 Query 158561 CGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATG 158620 ||||| | || || | || ||| | | || | | | |||||||||||||||||| Sbjct 44469 CGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAGTTATG 44528 Query 158621 CATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCT 158662 ||||| | ||| | || ||||| || |||| || |||||| Sbjct 44529 CATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570 >seq5090 Length=30266 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/135 (75%), Gaps = 7/135 (5%) Strand=Plus/Plus Query 158013 GTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTG 158072 ||||||||||||| || |||||| ||||||| ||| |||||| ||| |||||||| | Sbjct 12997 GTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCACCCTTGGATCACTGTTGCATATTCAG 13056 Query 158073 CTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCT 158132 |||| || |||||| || || ||| | ||||||| | |||||||| || | Sbjct 13057 CTCCTGT---TGCAGC----GCCGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTT 13109 Query 158133 CCGATGCTATGCCTC 158147 | |||| |||||||| Sbjct 13110 CTGATGGTATGCCTC 13124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572825096206800