Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_026924.1
Length=174885
Score E
Sequences producing significant alignments: (Bits) Value
seq752 324 2e-83
seq1263 277 2e-69
seq587 120 3e-22
seq2510 111 2e-19
seq37 104 3e-17
seq5090 84.2 2e-11
>seq752
Length=193215
Score = 324 bits (358), Expect = 2e-83
Identities = 477/669 (71%), Gaps = 6/669 (1%)
Strand=Plus/Minus
Query 161765 TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTCGCAACGAGCTGGTATAC 161824
||| ||| | ||| | || || ||| |||| || ||||| || | ||| ||||||||
Sbjct 189601 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 189542
Query 161825 CCATGGTCTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTTCTTA-CAGCGTCAGTTAGC 161882
||||| | |||||||||||| | || || ||||| ||||||| | || |||||
Sbjct 189541 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 189484
Query 161883 ACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGG 161941
||||| || | | | | ||||| || || || || || |||||||| || |||||
Sbjct 189483 ACTCCTGCCAATAGTTTAGCACATTCG-TTGTTGTTACTATGAGGTCCTGAAGCCCAAGG 189425
Query 161942 GGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGC 162001
||||| || ||| |||| | || || || |||| ||||| || ||||| || |
Sbjct 189424 AGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCAC 189365
Query 162002 CTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACGTCTTATTGGTATCCG 162061
|||| ||||| || || ||| | ||||| ||||||| || || | || | ||
Sbjct 189364 TTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGTTCAATTGCG 189305
Query 162062 TCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTAT 162121
|| || ||||| || || ||||||| ||| |||||||||||||| || ||||| ||
Sbjct 189304 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 189245
Query 162122 CTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTT 162181
|| ||| | |||||||| ||||||| || || || ||||| || || || || ||
Sbjct 189244 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 189185
Query 162182 TAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGAT 162241
| ||||| | | ||| | ||||| || ||||| ||||| ||||||| || ||||||||
Sbjct 189184 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 189125
Query 162242 GGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGA 162301
||||||||| ||| || | || | || || |||| ||||| || || | || || ||
Sbjct 189124 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGTAGA 189065
Query 162302 AAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACA 162361
|||||| |||| || ||||| || ||||| || || |||||| | | || ||
Sbjct 189064 AAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACCCA 189005
Query 162362 GGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTAT 162421
| ||||| |||||||| |||||||| || |||||||| ||||| || ||||| || |
Sbjct 189004 AGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGT 188945
Query 162422 TGCGTTTTC 162430
||| |||||
Sbjct 188944 TGCTTTTTC 188936
>seq1263
Length=120960
Score = 277 bits (306), Expect = 2e-69
Identities = 413/580 (71%), Gaps = 6/580 (1%)
Strand=Plus/Plus
Query 161765 TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTCGCAACGAGCTGGTATAC 161824
||| ||| | ||| | || || ||| |||| || ||||| || | ||| ||||||||
Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865
Query 161825 CCATGGTCTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTTCTTA-CAGCGTCAGTTAGC 161882
||||| | |||||||||||| | || || ||||| ||||||| | || |||||
Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 54923
Query 161883 ACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGG 161941
||||| || | | | | ||||| || || || || ||||||||||| || |||||
Sbjct 54924 ACTCCTGCCAATAGTTTAGCACATTCG-TTGTTGTTACTATGGGGTCCTGAAGCCCAAGG 54982
Query 161942 GGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGC 162001
||||| || ||| |||| | || || || |||| ||||| || ||||| || ||
Sbjct 54983 AGATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGC 55042
Query 162002 CTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACGTCTTATTGGTATCCG 162061
|||| ||||| || || ||| | ||||| |||||||| || || | || | ||
Sbjct 55043 TTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATTGCG 55102
Query 162062 TCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTAT 162121
|| || ||||| || || ||||||| ||| |||||||||||||| || ||||| ||
Sbjct 55103 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 55162
Query 162122 CTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTT 162181
|| ||| | |||||||| ||||||| || || || ||||| || || || || ||
Sbjct 55163 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 55222
Query 162182 TAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGAT 162241
| ||||| | | ||| | ||||| || ||||| ||||| ||||||| || ||||||||
Sbjct 55223 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 55282
Query 162242 GGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGA 162301
||||||||| ||| || | || | || || |||| ||||| || || | | || ||
Sbjct 55283 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGA 55342
Query 162302 AAATACATTATACGAGGATGGAGAACAAGCAAACACCTTT 162341
|||||| |||| || ||||| || ||||| || |||
Sbjct 55343 AAATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382
>seq587
Length=401750
Score = 120 bits (132), Expect = 3e-22
Identities = 135/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 160766 CACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTC 160825
|| |||| | | | | ||||| ||||| |||||||| || |||||||| |||||||| ||
Sbjct 44390 CATTGCTTTAGATATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 44449
Query 160826 CATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTGG 160885
| | ||| |||||||||||||| | || || | || || | | |||| || |
Sbjct 44450 TGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAA 44509
Query 160886 TCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTCGCTGC 160945
||||||||||||||||||||||| | ||| | || ||||| || | ||||| |||||
Sbjct 44510 CCTTGGTATGGAAGTTATGCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGC 44569
Query 160946 T 160946
|
Sbjct 44570 T 44570
>seq2510
Length=74850
Score = 111 bits (122), Expect = 2e-19
Identities = 132/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 162507 GGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAA 162566
||||| ||||| ||||| || || || || ||| | ||||| ||| | ||||| |||
Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941
Query 162567 GATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCA 162626
|||||||| ||||| || |||||||| || || ||||| | || ||||| | |||||
Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881
Query 162627 TGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCC 162685
||| | || || || || || ||||| ||| |||| ||||| || || ||||| ||
Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 56822
>seq37
Length=530226
Score = 104 bits (114), Expect = 3e-17
Identities = 191/279 (68%), Gaps = 1/279 (0%)
Strand=Plus/Plus
Query 162300 GAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACA 162359
||||||| |||| || ||||| || || || || ||| |||||| || | ||
Sbjct 49806 GAAAATATTTTATTTGAAGATGGTGATTGTGCTAATACATTTTGTGCGTTTAATCCAACC 49865
Query 162360 CAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGT 162419
|| | | ||| |||||||| |||||||| || |||||||| ||||| || ||||| ||
Sbjct 49866 CAAGTTGGAGAAACTTATTCAATGGTCACCGCTAACCGCTT-TGGTCCCAAATCTTTGGG 49924
Query 162420 ATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGT 162479
|| ||||| || || | ||| | |||||||| |||| ||||| | || | |||
Sbjct 49925 GTTTTTTTTTCCAATAAATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACCGGT 49984
Query 162480 CTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTC 162539
|||||| || | | | | ||||| ||| | ||||| || | || | |||
Sbjct 49985 TTATGGATGAGAGCTCCTAGAGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGCTTC 50044
Query 162540 GTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTT 162578
|| || || ||| | ||||| ||||||||||| |||
Sbjct 50045 GTTTCCCAAGAAATCTGTGCAGCGGAAGATCCTGAATTT 50083
>seq5090
Length=30266
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/135 (74%), Gaps = 7/135 (5%)
Strand=Plus/Plus
Query 160297 GTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTG 160356
|||||||||||||| | |||||| ||||||| ||| |||||| ||| |||||||| |
Sbjct 12997 GTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCACCCTTGGATCACTGTTGCATATTCAG 13056
Query 160357 CTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCT 160416
|||| || |||||| || || ||| | | ||||| | |||||||| || |
Sbjct 13057 CTCCTGT---TGCAGC----GCCGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTT 13109
Query 160417 CCGATGCTATGCCTC 160431
| |||| ||||||||
Sbjct 13110 CTGATGGTATGCCTC 13124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 559309789167800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |