Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq752 324 2e-83 seq1263 277 2e-69 seq587 120 3e-22 seq2510 111 2e-19 seq37 104 3e-17 seq5090 84.2 2e-11 >seq752 Length=193215 Score = 324 bits (358), Expect = 2e-83 Identities = 477/669 (71%), Gaps = 6/669 (1%) Strand=Plus/Minus Query 161765 TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTCGCAACGAGCTGGTATAC 161824 ||| ||| | ||| | || || ||| |||| || ||||| || | ||| |||||||| Sbjct 189601 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 189542 Query 161825 CCATGGTCTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTTCTTA-CAGCGTCAGTTAGC 161882 ||||| | |||||||||||| | || || ||||| ||||||| | || ||||| Sbjct 189541 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 189484 Query 161883 ACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGG 161941 ||||| || | | | | ||||| || || || || || |||||||| || ||||| Sbjct 189483 ACTCCTGCCAATAGTTTAGCACATTCG-TTGTTGTTACTATGAGGTCCTGAAGCCCAAGG 189425 Query 161942 GGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGC 162001 ||||| || ||| |||| | || || || |||| ||||| || ||||| || | Sbjct 189424 AGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCAC 189365 Query 162002 CTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACGTCTTATTGGTATCCG 162061 |||| ||||| || || ||| | ||||| ||||||| || || | || | || Sbjct 189364 TTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGTTCAATTGCG 189305 Query 162062 TCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTAT 162121 || || ||||| || || ||||||| ||| |||||||||||||| || ||||| || Sbjct 189304 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 189245 Query 162122 CTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTT 162181 || ||| | |||||||| ||||||| || || || ||||| || || || || || Sbjct 189244 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 189185 Query 162182 TAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGAT 162241 | ||||| | | ||| | ||||| || ||||| ||||| ||||||| || |||||||| Sbjct 189184 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 189125 Query 162242 GGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGA 162301 ||||||||| ||| || | || | || || |||| ||||| || || | || || || Sbjct 189124 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGTAGA 189065 Query 162302 AAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACA 162361 |||||| |||| || ||||| || ||||| || || |||||| | | || || Sbjct 189064 AAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACCCA 189005 Query 162362 GGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTAT 162421 | ||||| |||||||| |||||||| || |||||||| ||||| || ||||| || | Sbjct 189004 AGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGT 188945 Query 162422 TGCGTTTTC 162430 ||| ||||| Sbjct 188944 TGCTTTTTC 188936 >seq1263 Length=120960 Score = 277 bits (306), Expect = 2e-69 Identities = 413/580 (71%), Gaps = 6/580 (1%) Strand=Plus/Plus Query 161765 TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTCGCAACGAGCTGGTATAC 161824 ||| ||| | ||| | || || ||| |||| || ||||| || | ||| |||||||| Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865 Query 161825 CCATGGTCTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTTCTTA-CAGCGTCAGTTAGC 161882 ||||| | |||||||||||| | || || ||||| ||||||| | || ||||| Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 54923 Query 161883 ACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGG 161941 ||||| || | | | | ||||| || || || || ||||||||||| || ||||| Sbjct 54924 ACTCCTGCCAATAGTTTAGCACATTCG-TTGTTGTTACTATGGGGTCCTGAAGCCCAAGG 54982 Query 161942 GGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGC 162001 ||||| || ||| |||| | || || || |||| ||||| || ||||| || || Sbjct 54983 AGATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGC 55042 Query 162002 CTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACGTCTTATTGGTATCCG 162061 |||| ||||| || || ||| | ||||| |||||||| || || | || | || Sbjct 55043 TTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATTGCG 55102 Query 162062 TCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTAT 162121 || || ||||| || || ||||||| ||| |||||||||||||| || ||||| || Sbjct 55103 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 55162 Query 162122 CTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTT 162181 || ||| | |||||||| ||||||| || || || ||||| || || || || || Sbjct 55163 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 55222 Query 162182 TAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGAT 162241 | ||||| | | ||| | ||||| || ||||| ||||| ||||||| || |||||||| Sbjct 55223 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 55282 Query 162242 GGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGA 162301 ||||||||| ||| || | || | || || |||| ||||| || || | | || || Sbjct 55283 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGA 55342 Query 162302 AAATACATTATACGAGGATGGAGAACAAGCAAACACCTTT 162341 |||||| |||| || ||||| || ||||| || ||| Sbjct 55343 AAATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382 >seq587 Length=401750 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 160766 CACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTC 160825 || |||| | | | | ||||| ||||| |||||||| || |||||||| |||||||| || Sbjct 44390 CATTGCTTTAGATATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 44449 Query 160826 CATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTGG 160885 | | ||| |||||||||||||| | || || | || || | | |||| || | Sbjct 44450 TGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAA 44509 Query 160886 TCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTCGCTGC 160945 ||||||||||||||||||||||| | ||| | || ||||| || | ||||| ||||| Sbjct 44510 CCTTGGTATGGAAGTTATGCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGC 44569 Query 160946 T 160946 | Sbjct 44570 T 44570 >seq2510 Length=74850 Score = 111 bits (122), Expect = 2e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 162507 GGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAA 162566 ||||| ||||| ||||| || || || || ||| | ||||| ||| | ||||| ||| Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941 Query 162567 GATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCA 162626 |||||||| ||||| || |||||||| || || ||||| | || ||||| | ||||| Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881 Query 162627 TGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCC 162685 ||| | || || || || || ||||| ||| |||| ||||| || || ||||| || Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 56822 >seq37 Length=530226 Score = 104 bits (114), Expect = 3e-17 Identities = 191/279 (68%), Gaps = 1/279 (0%) Strand=Plus/Plus Query 162300 GAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACA 162359 ||||||| |||| || ||||| || || || || ||| |||||| || | || Sbjct 49806 GAAAATATTTTATTTGAAGATGGTGATTGTGCTAATACATTTTGTGCGTTTAATCCAACC 49865 Query 162360 CAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGT 162419 || | | ||| |||||||| |||||||| || |||||||| ||||| || ||||| || Sbjct 49866 CAAGTTGGAGAAACTTATTCAATGGTCACCGCTAACCGCTT-TGGTCCCAAATCTTTGGG 49924 Query 162420 ATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGT 162479 || ||||| || || | ||| | |||||||| |||| ||||| | || | ||| Sbjct 49925 GTTTTTTTTTCCAATAAATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACCGGT 49984 Query 162480 CTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTC 162539 |||||| || | | | | ||||| ||| | ||||| || | || | ||| Sbjct 49985 TTATGGATGAGAGCTCCTAGAGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGCTTC 50044 Query 162540 GTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTT 162578 || || || ||| | ||||| ||||||||||| ||| Sbjct 50045 GTTTCCCAAGAAATCTGTGCAGCGGAAGATCCTGAATTT 50083 >seq5090 Length=30266 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/135 (74%), Gaps = 7/135 (5%) Strand=Plus/Plus Query 160297 GTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTG 160356 |||||||||||||| | |||||| ||||||| ||| |||||| ||| |||||||| | Sbjct 12997 GTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCACCCTTGGATCACTGTTGCATATTCAG 13056 Query 160357 CTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCT 160416 |||| || |||||| || || ||| | | ||||| | |||||||| || | Sbjct 13057 CTCCTGT---TGCAGC----GCCGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTT 13109 Query 160417 CCGATGCTATGCCTC 160431 | |||| |||||||| Sbjct 13110 CTGATGGTATGCCTC 13124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559309789167800