Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_026926.1
Length=192108
Score E
Sequences producing significant alignments: (Bits) Value
seq752 318 7e-82
seq1263 284 1e-71
seq2510 118 1e-21
seq37 84.2 3e-11
>seq752
Length=193215
Score = 318 bits (352), Expect = 7e-82
Identities = 478/670 (71%), Gaps = 12/670 (2%)
Strand=Plus/Minus
Query 182438 TGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACAC 182497
||| ||| | || | || || ||| |||| || ||| | ||||| || ||||| ||
Sbjct 189601 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 189542
Query 182498 CCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGCTGTCTCG 182555
|| || | ||| ||||||| | ||||| ||| | ||||||| | || || || |||
Sbjct 189541 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 189484
Query 182556 ACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGG 182615
|| ||||| || | | | ||||| | | |||| || |||||||| | || ||
Sbjct 189483 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGAAGCCCAAGGA 189424
Query 182616 AATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCC 182675
|||| || ||||||||| | || || || |||| || || ||||||||||| |
Sbjct 189423 GATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCACT 189364
Query 182676 TTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGGAATCAG 182734
|||| || || ||||| ||| | | ||| ||||||||||||| ||| || | | |
Sbjct 189363 TTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTG-TTCAATTGCG 189305
Query 182735 ACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCCTCAT 182794
|||||| ||||| || || || |||| ||| |||||||| || || ||| ||||| ||
Sbjct 189304 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 189245
Query 182795 CTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTT 182854
||||| | || ||||| |||||| || ||||| |||||||| ||||| || ||
Sbjct 189244 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 189185
Query 182855 CAGGTTC---CTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCATAT 182911
| ||| || || |||| |||||||| | || |||||| | ||||| || |||||
Sbjct 189184 TCGATTCATCCTTTTTTTCCA--AGGGTTTC-ATAATTGGACATTGAACCCATTTCATAT 189128
Query 182912 GATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACAGT 182971
|||||||||||| ||| || |||| | || ||||| | ||||||||||||| || ||
Sbjct 189127 GATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGT 189068
Query 182972 AGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATTCCAC 183031
||| ||||| || | ||||||||| || ||||| ||||| ||||| | | ||
Sbjct 189067 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAAC 189008
Query 183032 TCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCGG 183091
|| | || || || ||||| ||||| || || || || |||||||| |||||||| ||
Sbjct 189007 CCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGG 188948
Query 183092 GGTTGCGTTT 183101
|||||| |||
Sbjct 188947 GGTTGCTTTT 188938
>seq1263
Length=120960
Score = 284 bits (314), Expect = 1e-71
Identities = 418/583 (72%), Gaps = 12/583 (2%)
Strand=Plus/Plus
Query 182438 TGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACAC 182497
||| ||| | || | || || ||| |||| || ||| | ||||| || ||||| ||
Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865
Query 182498 CCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGCTGTCTCG 182555
|| || | ||| ||||||| | ||||| ||| | ||||||| | || || || |||
Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 54923
Query 182556 ACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGG 182615
|| ||||| || | | | ||||| | | |||| ||||||||||| | || ||
Sbjct 54924 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGA 54983
Query 182616 AATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCC 182675
|||| || ||||||||| | || || || |||| || || ||||||||||| ||
Sbjct 54984 GATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCT 55043
Query 182676 TTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTC-GCCTGATTGGAATCAG 182734
|||| || || ||||| ||| | | |||||||||||||||| | ||| || | | |
Sbjct 55044 TTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTG-TTCAATTGCG 55102
Query 182735 ACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCCTCAT 182794
|||||| ||||| || || || |||| ||| |||||||| || || ||| ||||| ||
Sbjct 55103 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 55162
Query 182795 CTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTT 182854
||||| | || ||||| |||||| || ||||| |||||||| ||||| || ||
Sbjct 55163 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 55222
Query 182855 CAGGT---TCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCATAT 182911
| | |||| || |||| ||||||| || || |||||| | ||||| || |||||
Sbjct 55223 TCGATTCATCCTTTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCATTTCATAT 55279
Query 182912 GATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACAGT 182971
|||||||||||| ||| || |||| | || ||||| | ||||||||||||| | ||
Sbjct 55280 GATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGT 55339
Query 182972 AGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTT 183014
||| ||||| || | ||||||||| || ||||| ||||||
Sbjct 55340 AGAAAATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382
>seq2510
Length=74850
Score = 118 bits (130), Expect = 1e-21
Identities = 142/193 (74%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 183166 CTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGA 183225
|| ||||| | | || || ||||| || || || || ||||| || | || || |
Sbjct 57014 CTCTTGGGGTAGTCGGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAA 56955
Query 183226 TTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAAAGAACATCCTTCTCAATG 183285
| | ||||| ||||||||||| || ||||| |||||||| || || || ||| | || |
Sbjct 56954 TCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACG 56895
Query 183286 AAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACATGAAAACTTCATCTTCCCTG 183345
|||| | ||||||||| |||| || ||||| || ||||||||| | || |||||||
Sbjct 56894 AAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTG 56835
Query 183346 AAGAAGTTCTACC 183358
| || ||||||||
Sbjct 56834 AGGAGGTTCTACC 56822
>seq37
Length=530226
Score = 84.2 bits (92), Expect = 3e-11
Identities = 186/278 (67%), Gaps = 1/278 (0%)
Strand=Plus/Plus
Query 182973 GAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATTCCACT 183032
|| |||| || | ||||||||| || || || |||||| ||||| || | ||
Sbjct 49806 GAAAATATTTTATTTGAAGATGGTGATTGTGCTAATACATTTTGTGCGTTTAATCCAACC 49865
Query 183033 CAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCGGG 183092
|| | | || || ||||| ||||| || || || || ||| |||| |||||||| |||
Sbjct 49866 CAAGTTGGAGAAACTTATTCAATGGTCACCGCTAACCGCTTT-GGTCCCAAATCTTTGGG 49924
Query 183093 GTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGT 183152
||| ||| |||||| ||||||| || || ||||||| ||||| | || | |||
Sbjct 49925 GTTTTTTTTTCCAATAAATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACCGGT 49984
Query 183153 CTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTT 183212
| ||| | || | | | | || || ||| | || || || | |||| ||
Sbjct 49985 TTATGGATGAGAGCTCCTAGAGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGCTTC 50044
Query 183213 GTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTT 183250
|| ||||| || | ||||| ||||||||||| ||
Sbjct 50045 GTTTCCCAAGAAATCTGTGCAGCGGAAGATCCTGAATT 50082
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 614404258548320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |