Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq752 318 7e-82 seq1263 284 1e-71 seq2510 118 1e-21 seq37 84.2 3e-11 >seq752 Length=193215 Score = 318 bits (352), Expect = 7e-82 Identities = 478/670 (71%), Gaps = 12/670 (2%) Strand=Plus/Minus Query 182438 TGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACAC 182497 ||| ||| | || | || || ||| |||| || ||| | ||||| || ||||| || Sbjct 189601 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 189542 Query 182498 CCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGCTGTCTCG 182555 || || | ||| ||||||| | ||||| ||| | ||||||| | || || || ||| Sbjct 189541 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 189484 Query 182556 ACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGG 182615 || ||||| || | | | ||||| | | |||| || |||||||| | || || Sbjct 189483 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGAAGCCCAAGGA 189424 Query 182616 AATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCC 182675 |||| || ||||||||| | || || || |||| || || ||||||||||| | Sbjct 189423 GATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCACT 189364 Query 182676 TTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGGAATCAG 182734 |||| || || ||||| ||| | | ||| ||||||||||||| ||| || | | | Sbjct 189363 TTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTG-TTCAATTGCG 189305 Query 182735 ACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCCTCAT 182794 |||||| ||||| || || || |||| ||| |||||||| || || ||| ||||| || Sbjct 189304 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 189245 Query 182795 CTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTT 182854 ||||| | || ||||| |||||| || ||||| |||||||| ||||| || || Sbjct 189244 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 189185 Query 182855 CAGGTTC---CTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCATAT 182911 | ||| || || |||| |||||||| | || |||||| | ||||| || ||||| Sbjct 189184 TCGATTCATCCTTTTTTTCCA--AGGGTTTC-ATAATTGGACATTGAACCCATTTCATAT 189128 Query 182912 GATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACAGT 182971 |||||||||||| ||| || |||| | || ||||| | ||||||||||||| || || Sbjct 189127 GATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGT 189068 Query 182972 AGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATTCCAC 183031 ||| ||||| || | ||||||||| || ||||| ||||| ||||| | | || Sbjct 189067 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAAC 189008 Query 183032 TCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCGG 183091 || | || || || ||||| ||||| || || || || |||||||| |||||||| || Sbjct 189007 CCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGG 188948 Query 183092 GGTTGCGTTT 183101 |||||| ||| Sbjct 188947 GGTTGCTTTT 188938 >seq1263 Length=120960 Score = 284 bits (314), Expect = 1e-71 Identities = 418/583 (72%), Gaps = 12/583 (2%) Strand=Plus/Plus Query 182438 TGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACAC 182497 ||| ||| | || | || || ||| |||| || ||| | ||||| || ||||| || Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865 Query 182498 CCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGCTGTCTCG 182555 || || | ||| ||||||| | ||||| ||| | ||||||| | || || || ||| Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 54923 Query 182556 ACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGG 182615 || ||||| || | | | ||||| | | |||| ||||||||||| | || || Sbjct 54924 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGA 54983 Query 182616 AATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCC 182675 |||| || ||||||||| | || || || |||| || || ||||||||||| || Sbjct 54984 GATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCT 55043 Query 182676 TTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTC-GCCTGATTGGAATCAG 182734 |||| || || ||||| ||| | | |||||||||||||||| | ||| || | | | Sbjct 55044 TTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTG-TTCAATTGCG 55102 Query 182735 ACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCCTCAT 182794 |||||| ||||| || || || |||| ||| |||||||| || || ||| ||||| || Sbjct 55103 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 55162 Query 182795 CTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTT 182854 ||||| | || ||||| |||||| || ||||| |||||||| ||||| || || Sbjct 55163 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 55222 Query 182855 CAGGT---TCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCATAT 182911 | | |||| || |||| ||||||| || || |||||| | ||||| || ||||| Sbjct 55223 TCGATTCATCCTTTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCATTTCATAT 55279 Query 182912 GATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACAGT 182971 |||||||||||| ||| || |||| | || ||||| | ||||||||||||| | || Sbjct 55280 GATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGT 55339 Query 182972 AGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTT 183014 ||| ||||| || | ||||||||| || ||||| |||||| Sbjct 55340 AGAAAATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382 >seq2510 Length=74850 Score = 118 bits (130), Expect = 1e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 183166 CTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGA 183225 || ||||| | | || || ||||| || || || || ||||| || | || || | Sbjct 57014 CTCTTGGGGTAGTCGGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAA 56955 Query 183226 TTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAAAGAACATCCTTCTCAATG 183285 | | ||||| ||||||||||| || ||||| |||||||| || || || ||| | || | Sbjct 56954 TCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACG 56895 Query 183286 AAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACATGAAAACTTCATCTTCCCTG 183345 |||| | ||||||||| |||| || ||||| || ||||||||| | || ||||||| Sbjct 56894 AAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTG 56835 Query 183346 AAGAAGTTCTACC 183358 | || |||||||| Sbjct 56834 AGGAGGTTCTACC 56822 >seq37 Length=530226 Score = 84.2 bits (92), Expect = 3e-11 Identities = 186/278 (67%), Gaps = 1/278 (0%) Strand=Plus/Plus Query 182973 GAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATTCCACT 183032 || |||| || | ||||||||| || || || |||||| ||||| || | || Sbjct 49806 GAAAATATTTTATTTGAAGATGGTGATTGTGCTAATACATTTTGTGCGTTTAATCCAACC 49865 Query 183033 CAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCGGG 183092 || | | || || ||||| ||||| || || || || ||| |||| |||||||| ||| Sbjct 49866 CAAGTTGGAGAAACTTATTCAATGGTCACCGCTAACCGCTTT-GGTCCCAAATCTTTGGG 49924 Query 183093 GTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGT 183152 ||| ||| |||||| ||||||| || || ||||||| ||||| | || | ||| Sbjct 49925 GTTTTTTTTTCCAATAAATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACCGGT 49984 Query 183153 CTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTT 183212 | ||| | || | | | | || || ||| | || || || | |||| || Sbjct 49985 TTATGGATGAGAGCTCCTAGAGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGCTTC 50044 Query 183213 GTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTT 183250 || ||||| || | ||||| ||||||||||| || Sbjct 50045 GTTTCCCAAGAAATCTGTGCAGCGGAAGATCCTGAATT 50082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614404258548320