Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq752 318 9e-82 seq1263 277 3e-69 seq2510 102 1e-16 seq587 86.0 9e-12 seq37 86.0 9e-12 >seq752 Length=193215 Score = 318 bits (352), Expect = 9e-82 Identities = 471/665 (71%), Gaps = 2/665 (0%) Strand=Plus/Minus Query 175928 TGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGTCACGAGTTGGTACAC 175987 ||| ||| | || | || |||||| |||| || ||||| ||||| || ||||| || Sbjct 189601 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 189542 Query 175988 CCATGGTCTTGCTTCTTCCTATCTTGAGGG-TGCTAACTTTCTCACAGCGGCTGTCTCGA 176046 ||||| | ||| ||||||| | || || ||| || || | || || || || |||| Sbjct 189541 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTTCGA 189483 Query 176047 CTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAGGGCG 176106 ||||||| || | | | ||||| | | |||| || ||||||||| | || || | Sbjct 189482 CTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGAAGCCCAAGGAG 189423 Query 176107 ACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGCTCTCCACGGTGCCT 176166 | || || ||| |||| | || || || ||| | ||||||||||||||||| | | Sbjct 189422 ATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCACTT 189363 Query 176167 TCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACTCATTGGTATCCGTC 176226 ||| || || || || ||| | ||||| ||||||| || | || | || | Sbjct 189362 TCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGTTCAATTGCGAC 189303 Query 176227 CCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTAT 176286 | || || || || |||||| || ||| || ||||| ||||| ||| || || | | Sbjct 189302 CTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTT 189243 Query 176287 ACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTA 176346 | ||||||||||| ||| ||||||||||| ||| |||||||| || || || ||| Sbjct 189242 ATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTTC 189183 Query 176347 GATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGG 176406 ||||| | | ||| | || || || || || |||||| ||||||| || |||||||||| Sbjct 189182 GATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGG 189123 Query 176407 GAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAA 176466 ||||||| ||| || | || | || || |||| || |||||||| | |||||| |||| Sbjct 189122 GAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGTAGAAA 189063 Query 176467 ATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTTCGATTCCACGCAGG 176526 |||| ||| ||||||||| || || || ||| |||||| | | || || | Sbjct 189062 ATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACCCAAG 189003 Query 176527 AGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTG 176586 ||||| || ||||| ||||| || || |||||||| ||||| |||||||| ||||||| Sbjct 189002 CTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTG 188943 Query 176587 CGTTT 176591 | ||| Sbjct 188942 CTTTT 188938 >seq1263 Length=120960 Score = 277 bits (306), Expect = 3e-69 Identities = 400/562 (71%), Gaps = 2/562 (0%) Strand=Plus/Plus Query 175928 TGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGTCACGAGTTGGTACAC 175987 ||| ||| | || | || |||||| |||| || ||||| ||||| || ||||| || Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865 Query 175988 CCATGGTCTTGCTTCTTCCTATCTTGAGGG-TGCTAACTTTCTCACAGCGGCTGTCTCGA 176046 ||||| | ||| ||||||| | || || ||| || || | || || || || |||| Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTTCGA 54924 Query 176047 CTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAGGGCG 176106 ||||||| || | | | ||||| | | |||| |||||||||||| | || || | Sbjct 54925 CTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGAG 54984 Query 176107 ACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGCTCTCCACGGTGCCT 176166 | || || ||| |||| | || || || ||| | ||||||||||||||||| || | Sbjct 54985 ATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCTT 55044 Query 176167 TCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACTCATTGGTATCCGTC 176226 ||| || || || || ||| | ||||| |||||||| || | || | || | Sbjct 55045 TCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATTGCGAC 55104 Query 176227 CCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTAT 176286 | || || || || |||||| || ||| || ||||| ||||| ||| || || | | Sbjct 55105 CTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTT 55164 Query 176287 ACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTA 176346 | ||||||||||| ||| ||||||||||| ||| |||||||| || || || ||| Sbjct 55165 ATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTTC 55224 Query 176347 GATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGG 176406 ||||| | | ||| | || || || || || |||||| ||||||| || |||||||||| Sbjct 55225 GATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGG 55284 Query 176407 GAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAA 176466 ||||||| ||| || | || | || || |||| || |||||||| | || ||| |||| Sbjct 55285 GAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGAAA 55344 Query 176467 ATACCCTATATGAAGATGGAGA 176488 |||| ||| ||||||||| || Sbjct 55345 ATACTTTATTTGAAGATGGTGA 55366 >seq2510 Length=74850 Score = 102 bits (112), Expect = 1e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 176670 GGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAA 176729 || || ||||| || || || || ||||| || | ||| || || | ||||| ||| Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941 Query 176730 GATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCA 176789 |||||||| ||||| ||||||||||| || || || ||| | |||||||| | | || Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881 Query 176790 TGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACC 176848 |||||||| || ||||| || ||||| || ||||||| || || |||||||| Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 56822 >seq587 Length=401750 Score = 86.0 bits (94), Expect = 9e-12 Identities = 111/151 (74%), Gaps = 8/151 (5%) Strand=Plus/Plus Query 175292 CACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGG 175351 ||| ||||| |||||||| ||||||||||| |||||||| ||||| | || | ||||| Sbjct 44408 CACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGG 44467 Query 175352 TAGAGTATTGAACACCTGGGCGGATGTTCTTAA-CAGAGCTGGT---CTTGGGATGGAAG 175407 | | ||| | || || | || ||| || |||| || |||| ||||| ||||||| Sbjct 44468 TCGTGTAATTAATACTTAAGCTGATATTATTAATCA----TGGTAACCTTGGTATGGAAG 44523 Query 175408 TAATGCATGAGAGAAATGCACACAACTTCCC 175438 | |||||||| ||| | || ||||| || Sbjct 44524 TTATGCATGAACATAATACTCATAACTTTCC 44554 >seq37 Length=530226 Score = 86.0 bits (94), Expect = 9e-12 Identities = 187/279 (67%), Gaps = 1/279 (0%) Strand=Plus/Plus Query 176463 GAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTTCGATTCCACG 176522 ||||||| ||| ||||||||| || || || || |||||| || | || Sbjct 49806 GAAAATATTTTATTTGAAGATGGTGATTGTGCTAATACATTTTGTGCGTTTAATCCAACC 49865 Query 176523 CAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGG 176582 || | | ||| || ||||| ||||| || || |||||||| ||||| |||||||| ||| Sbjct 49866 CAAGTTGGAGAAACTTATTCAATGGTCACCGCTAACCGCTT-TGGTCCCAAATCTTTGGG 49924 Query 176583 GTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGT 176642 ||| ||| ||||| ||||| | || || ||||||| ||||| | || | ||| Sbjct 49925 GTTTTTTTTTCCAATAAATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACCGGT 49984 Query 176643 CTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTT 176702 | ||| | | | | | | | || || ||| | || || || | |||| || Sbjct 49985 TTATGGATGAGAGCTCCTAGAGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGCTTC 50044 Query 176703 GTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTT 176741 || |||||| || | ||||| ||||||||||| ||| Sbjct 50045 GTTTCCCAAGAAATCTGTGCAGCGGAAGATCCTGAATTT 50083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729676232311720