Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_026927.1
Length=228143
Score E
Sequences producing significant alignments: (Bits) Value
seq752 318 9e-82
seq1263 277 3e-69
seq2510 102 1e-16
seq587 86.0 9e-12
seq37 86.0 9e-12
>seq752
Length=193215
Score = 318 bits (352), Expect = 9e-82
Identities = 471/665 (71%), Gaps = 2/665 (0%)
Strand=Plus/Minus
Query 175928 TGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGTCACGAGTTGGTACAC 175987
||| ||| | || | || |||||| |||| || ||||| ||||| || ||||| ||
Sbjct 189601 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 189542
Query 175988 CCATGGTCTTGCTTCTTCCTATCTTGAGGG-TGCTAACTTTCTCACAGCGGCTGTCTCGA 176046
||||| | ||| ||||||| | || || ||| || || | || || || || ||||
Sbjct 189541 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTTCGA 189483
Query 176047 CTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAGGGCG 176106
||||||| || | | | ||||| | | |||| || ||||||||| | || || |
Sbjct 189482 CTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGAAGCCCAAGGAG 189423
Query 176107 ACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGCTCTCCACGGTGCCT 176166
| || || ||| |||| | || || || ||| | ||||||||||||||||| | |
Sbjct 189422 ATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCACTT 189363
Query 176167 TCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACTCATTGGTATCCGTC 176226
||| || || || || ||| | ||||| ||||||| || | || | || |
Sbjct 189362 TCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGTTCAATTGCGAC 189303
Query 176227 CCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTAT 176286
| || || || || |||||| || ||| || ||||| ||||| ||| || || | |
Sbjct 189302 CTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTT 189243
Query 176287 ACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTA 176346
| ||||||||||| ||| ||||||||||| ||| |||||||| || || || |||
Sbjct 189242 ATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTTC 189183
Query 176347 GATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGG 176406
||||| | | ||| | || || || || || |||||| ||||||| || ||||||||||
Sbjct 189182 GATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGG 189123
Query 176407 GAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAA 176466
||||||| ||| || | || | || || |||| || |||||||| | |||||| ||||
Sbjct 189122 GAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGTAGAAA 189063
Query 176467 ATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTTCGATTCCACGCAGG 176526
|||| ||| ||||||||| || || || ||| |||||| | | || || |
Sbjct 189062 ATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACCCAAG 189003
Query 176527 AGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTG 176586
||||| || ||||| ||||| || || |||||||| ||||| |||||||| |||||||
Sbjct 189002 CTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTG 188943
Query 176587 CGTTT 176591
| |||
Sbjct 188942 CTTTT 188938
>seq1263
Length=120960
Score = 277 bits (306), Expect = 3e-69
Identities = 400/562 (71%), Gaps = 2/562 (0%)
Strand=Plus/Plus
Query 175928 TGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGTCACGAGTTGGTACAC 175987
||| ||| | || | || |||||| |||| || ||||| ||||| || ||||| ||
Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865
Query 175988 CCATGGTCTTGCTTCTTCCTATCTTGAGGG-TGCTAACTTTCTCACAGCGGCTGTCTCGA 176046
||||| | ||| ||||||| | || || ||| || || | || || || || ||||
Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTTCGA 54924
Query 176047 CTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAGGGCG 176106
||||||| || | | | ||||| | | |||| |||||||||||| | || || |
Sbjct 54925 CTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGAG 54984
Query 176107 ACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGCTCTCCACGGTGCCT 176166
| || || ||| |||| | || || || ||| | ||||||||||||||||| || |
Sbjct 54985 ATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCTT 55044
Query 176167 TCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACTCATTGGTATCCGTC 176226
||| || || || || ||| | ||||| |||||||| || | || | || |
Sbjct 55045 TCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATTGCGAC 55104
Query 176227 CCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTAT 176286
| || || || || |||||| || ||| || ||||| ||||| ||| || || | |
Sbjct 55105 CTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTT 55164
Query 176287 ACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTA 176346
| ||||||||||| ||| ||||||||||| ||| |||||||| || || || |||
Sbjct 55165 ATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTTC 55224
Query 176347 GATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGG 176406
||||| | | ||| | || || || || || |||||| ||||||| || ||||||||||
Sbjct 55225 GATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGG 55284
Query 176407 GAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAA 176466
||||||| ||| || | || | || || |||| || |||||||| | || ||| ||||
Sbjct 55285 GAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGAAA 55344
Query 176467 ATACCCTATATGAAGATGGAGA 176488
|||| ||| ||||||||| ||
Sbjct 55345 ATACTTTATTTGAAGATGGTGA 55366
>seq2510
Length=74850
Score = 102 bits (112), Expect = 1e-16
Identities = 130/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 176670 GGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAA 176729
|| || ||||| || || || || ||||| || | ||| || || | ||||| |||
Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941
Query 176730 GATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCA 176789
|||||||| ||||| ||||||||||| || || || ||| | |||||||| | | ||
Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881
Query 176790 TGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACC 176848
|||||||| || ||||| || ||||| || ||||||| || || ||||||||
Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 56822
>seq587
Length=401750
Score = 86.0 bits (94), Expect = 9e-12
Identities = 111/151 (74%), Gaps = 8/151 (5%)
Strand=Plus/Plus
Query 175292 CACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGG 175351
||| ||||| |||||||| ||||||||||| |||||||| ||||| | || | |||||
Sbjct 44408 CACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGG 44467
Query 175352 TAGAGTATTGAACACCTGGGCGGATGTTCTTAA-CAGAGCTGGT---CTTGGGATGGAAG 175407
| | ||| | || || | || ||| || |||| || |||| ||||| |||||||
Sbjct 44468 TCGTGTAATTAATACTTAAGCTGATATTATTAATCA----TGGTAACCTTGGTATGGAAG 44523
Query 175408 TAATGCATGAGAGAAATGCACACAACTTCCC 175438
| |||||||| ||| | || ||||| ||
Sbjct 44524 TTATGCATGAACATAATACTCATAACTTTCC 44554
>seq37
Length=530226
Score = 86.0 bits (94), Expect = 9e-12
Identities = 187/279 (67%), Gaps = 1/279 (0%)
Strand=Plus/Plus
Query 176463 GAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTTCGATTCCACG 176522
||||||| ||| ||||||||| || || || || |||||| || | ||
Sbjct 49806 GAAAATATTTTATTTGAAGATGGTGATTGTGCTAATACATTTTGTGCGTTTAATCCAACC 49865
Query 176523 CAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGG 176582
|| | | ||| || ||||| ||||| || || |||||||| ||||| |||||||| |||
Sbjct 49866 CAAGTTGGAGAAACTTATTCAATGGTCACCGCTAACCGCTT-TGGTCCCAAATCTTTGGG 49924
Query 176583 GTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGT 176642
||| ||| ||||| ||||| | || || ||||||| ||||| | || | |||
Sbjct 49925 GTTTTTTTTTCCAATAAATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACCGGT 49984
Query 176643 CTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTT 176702
| ||| | | | | | | | || || ||| | || || || | |||| ||
Sbjct 49985 TTATGGATGAGAGCTCCTAGAGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGCTTC 50044
Query 176703 GTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTT 176741
|| |||||| || | ||||| ||||||||||| |||
Sbjct 50045 GTTTCCCAAGAAATCTGTGCAGCGGAAGATCCTGAATTT 50083
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 729676232311720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |