Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq752 329 4e-85 seq1263 282 5e-71 seq2510 107 2e-18 seq371 86.0 8e-12 seq5090 84.2 3e-11 >seq752 Length=193215 Score = 329 bits (364), Expect = 4e-85 Identities = 478/669 (71%), Gaps = 6/669 (1%) Strand=Plus/Minus Query 179300 TGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACAC 179359 ||| ||| | || | || || ||| |||| || ||| | ||||| || ||||| || Sbjct 189601 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 189542 Query 179360 CCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTTA-CGGCAGCTGTCTCG 179417 || || | |||||||||||| | || || ||| | ||||||| | || || || ||| Sbjct 189541 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 189484 Query 179418 ACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGG 179477 || ||||| || | | | ||||| | | |||| || |||||||| | || || Sbjct 189483 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGAAGCCCAAGGA 189424 Query 179478 AATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCC 179537 |||| || ||||||||| | || || || |||| || || ||||||||||| | Sbjct 189423 GATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCACT 189364 Query 179538 TTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGGTATCAG 179596 |||| || || ||||| ||| | | ||| ||||||||||||| ||| | | | | Sbjct 189363 TTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGTTCAATTGC-G 189305 Query 179597 ACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCAT 179656 |||||| ||||| || || || |||| ||| |||||||| || || ||| ||||| || Sbjct 189304 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 189245 Query 179657 CTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTT 179716 ||||| | || ||||| |||||| || ||||| |||||||| ||||| || || Sbjct 189244 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 189185 Query 179717 CAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGAT 179776 | ||| | || || | || || || || || ||||| | ||||| || |||||||| Sbjct 189184 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 189125 Query 179777 GGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGA 179836 ||||||||| ||| || | || | || ||||| | ||||||||||| | ||||||||| Sbjct 189124 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGTAGA 189065 Query 179837 GAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACA 179896 ||||| || | ||||||||| || |||||||| || |||||| | | || || Sbjct 189064 AAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACCCA 189005 Query 179897 GGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTAT 179956 | ||||| |||||||| |||||||| || |||||||| ||||| || ||||| || | Sbjct 189004 AGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGT 188945 Query 179957 TGCATTTTC 179965 ||| ||||| Sbjct 188944 TGCTTTTTC 188936 >seq1263 Length=120960 Score = 282 bits (312), Expect = 5e-71 Identities = 414/580 (71%), Gaps = 6/580 (1%) Strand=Plus/Plus Query 179300 TGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACAC 179359 ||| ||| | || | || || ||| |||| || ||| | ||||| || ||||| || Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865 Query 179360 CCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTTA-CGGCAGCTGTCTCG 179417 || || | |||||||||||| | || || ||| | ||||||| | || || || ||| Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 54923 Query 179418 ACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGG 179477 || ||||| || | | | ||||| | | |||| ||||||||||| | || || Sbjct 54924 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGA 54983 Query 179478 AATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCC 179537 |||| || ||||||||| | || || || |||| || || ||||||||||| || Sbjct 54984 GATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCT 55043 Query 179538 TTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGGTATCAG 179596 |||| || || ||||| ||| | | ||||||||||||||||| ||| | | | | Sbjct 55044 TTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATTGC-G 55102 Query 179597 ACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCAT 179656 |||||| ||||| || || || |||| ||| |||||||| || || ||| ||||| || Sbjct 55103 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 55162 Query 179657 CTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTT 179716 ||||| | || ||||| |||||| || ||||| |||||||| ||||| || || Sbjct 55163 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 55222 Query 179717 CAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGAT 179776 | ||| | || || | || || || || || ||||| | ||||| || |||||||| Sbjct 55223 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 55282 Query 179777 GGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGA 179836 ||||||||| ||| || | || | || ||||| | ||||||||||| | || |||||| Sbjct 55283 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGA 55342 Query 179837 GAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTT 179876 ||||| || | ||||||||| || |||||||| ||| Sbjct 55343 AAATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382 >seq2510 Length=74850 Score = 107 bits (118), Expect = 2e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 180042 GGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAA 180101 ||||| ||||| ||||| || || || || ||| | ||||| ||| | ||||| ||| Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941 Query 180102 GATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCA 180161 ||||| || |||||||| ||||||||||| || |||||| | || ||||| | ||||| Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881 Query 180162 TGGTTGGCACCAGTTGATCAACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCTGCC 180220 ||| |||| | ||||| || ||||| | ||||||| || || ||||| || Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 56822 >seq371 Length=442687 Score = 86.0 bits (94), Expect = 8e-12 Identities = 140/198 (71%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 176337 GATGATCAGTATATCCTTGACGCTGCTGA--AGAAGCAGGTGTAGATATCAATTACTCTT 176394 || ||||| ||||| || |||| ||||| ||||| ||| | ||| | ||||||| Sbjct 304567 GACGATCAATATATTCTCGACGAGGCTGAGGAGAAG--GGTATCGATCTGCCCTACTCTT 304510 Query 176395 GTCGTGCTGGTGCTTGTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGA 176454 | | || ||| |||| || || || || ||||| | | || || || || || Sbjct 304509 GCAGGGCAGGTTCTTGCTCCTCCTGCGCCGGCAAGGTGGTCGAAGGATCGGTGGACCAAT 304450 Query 176455 GTGAT--CAGTCTTTCCTGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGT 176512 |||| ||| ||||| ||||||||||| ||| | |||||||| |||||||||| || Sbjct 304449 CTGATGGCAGC--TTCCTTGATGATGATCAGCTTGGAGCTGGTTTTGTTCTGACTTGTGT 304392 Query 176513 ATCTTATCCTACTAGTGA 176530 ||| |||||| ||||| Sbjct 304391 TGCTTTTCCTACCAGTGA 304374 >seq5090 Length=30266 Score = 84.2 bits (92), Expect = 3e-11 Identities = 98/133 (74%), Gaps = 7/133 (5%) Strand=Plus/Plus Query 178186 GTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTG 178245 |||||||||||||| | |||||| ||||||| ||| |||||| ||| ||||| || | Sbjct 12997 GTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCACCCTTGGATCACTGTTGCATATTCAG 13056 Query 178246 CTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTT 178305 |||| || ||||| || || ||| || ||||||| | |||||||| |||| Sbjct 13057 CTCCTGTTGCAGC-------GCCGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTT 13109 Query 178306 CTGACGCAATGCC 178318 |||| | ||||| Sbjct 13110 CTGATGGTATGCC 13122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605799246492720