Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq752 336 2e-87 seq1263 289 3e-73 seq2510 102 9e-17 seq587 98.7 1e-15 >seq752 Length=193215 Score = 336 bits (372), Expect = 2e-87 Identities = 482/670 (72%), Gaps = 8/670 (1%) Strand=Plus/Minus Query 159976 TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTCGCAACGAGCTGGTATAC 160035 ||| ||| | ||| | || || ||| |||| || ||||| || | ||| |||||||| Sbjct 189601 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 189542 Query 160036 CCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTTCTTA-CAGCGTCAGTTAGC 160093 |||||| | |||||||||||| | || || ||||| ||||||| | || ||||| Sbjct 189541 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 189484 Query 160094 ACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGG 160152 ||||| || | | | | ||||| || || || || || |||||||| || ||||| Sbjct 189483 ACTCCTGCCAATAGTTTAGCACATTCG-TTGTTGTTACTATGAGGTCCTGAAGCCCAAGG 189425 Query 160153 GGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGC 160212 ||||| | ||| |||| | || || || |||| ||||| || ||||| || | Sbjct 189424 AGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCAC 189365 Query 160213 CTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCC 160271 |||| ||||| || || ||| | ||||| ||||||| || || ||| || | | | Sbjct 189364 TTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGTTCAAT-TGC 189306 Query 160272 GTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCA 160331 | ||||| ||||| || || ||||||| ||| |||||||| ||||| |||||||| | Sbjct 189305 GACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGA 189246 Query 160332 TCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCT 160391 | || ||| | |||||||| ||||||| || || || ||||| || || || || | Sbjct 189245 TTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATAT 189186 Query 160392 TTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGA 160451 || ||||| | | || | ||||| ||||| || ||||| | ||||| || ||||||| Sbjct 189185 TTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGA 189126 Query 160452 TGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAG 160511 |||||||||| ||| || | || | || ||||| | || |||||||| | |||||||| Sbjct 189125 TGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGTAG 189066 Query 160512 AGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACAC 160571 | || || | | ||||||||| || |||||||| || |||||| | | || | Sbjct 189065 AAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACCC 189006 Query 160572 AGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTA 160631 | | ||||| |||||||| |||||||| || |||||||| ||||| || ||||| || Sbjct 189005 AAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGG 188946 Query 160632 TTGCGTTTTC 160641 |||| ||||| Sbjct 188945 TTGCTTTTTC 188936 >seq1263 Length=120960 Score = 289 bits (320), Expect = 3e-73 Identities = 418/581 (72%), Gaps = 8/581 (1%) Strand=Plus/Plus Query 159976 TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTCGCAACGAGCTGGTATAC 160035 ||| ||| | ||| | || || ||| |||| || ||||| || | ||| |||||||| Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865 Query 160036 CCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTTCTTA-CAGCGTCAGTTAGC 160093 |||||| | |||||||||||| | || || ||||| ||||||| | || ||||| Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 54923 Query 160094 ACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGG 160152 ||||| || | | | | ||||| || || || || ||||||||||| || ||||| Sbjct 54924 ACTCCTGCCAATAGTTTAGCACATTCG-TTGTTGTTACTATGGGGTCCTGAAGCCCAAGG 54982 Query 160153 GGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGC 160212 ||||| | ||| |||| | || || || |||| ||||| || ||||| || || Sbjct 54983 AGATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGC 55042 Query 160213 CTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCC 160271 |||| ||||| || || ||| | ||||| |||||||| || || ||| || | | | Sbjct 55043 TTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGC 55101 Query 160272 GTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCA 160331 | ||||| ||||| || || ||||||| ||| |||||||| ||||| |||||||| | Sbjct 55102 GACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGA 55161 Query 160332 TCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCT 160391 | || ||| | |||||||| ||||||| || || || ||||| || || || || | Sbjct 55162 TTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATAT 55221 Query 160392 TTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGA 160451 || ||||| | | || | ||||| ||||| || ||||| | ||||| || ||||||| Sbjct 55222 TTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGA 55281 Query 160452 TGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAG 160511 |||||||||| ||| || | || | || ||||| | || |||||||| | || ||||| Sbjct 55282 TGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAG 55341 Query 160512 AGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTT 160552 | || || | | ||||||||| || |||||||| ||| Sbjct 55342 AAAATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382 >seq2510 Length=74850 Score = 102 bits (112), Expect = 9e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 160718 GGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAA 160777 ||||| ||||| || || || || || || ||| | || || || | ||||| ||| Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941 Query 160778 GATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCA 160837 ||||| ||||||||||| ||||||||||| || || || | || ||||| | ||||| Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881 Query 160838 TGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCC 160896 ||| | || || || || || ||||| ||| |||| ||||| || || ||||| || Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 56822 >seq587 Length=401750 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 159204 ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 159263 || ||||| |||||||| || |||||||| |||||||| || | ||||| |||| ||| Sbjct 44409 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGT 44468 Query 159264 CGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATG 159323 ||||| | || || | || ||| | | || | || || ||||||||||||||| Sbjct 44469 CGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAGTTATG 44528 Query 159324 CATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCT 159365 ||||| | ||| | || ||||| || | ||||| |||||| Sbjct 44529 CATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552281829507520