Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_027130.1
Length=172688
Score E
Sequences producing significant alignments: (Bits) Value
seq752 336 2e-87
seq1263 289 3e-73
seq2510 102 9e-17
seq587 98.7 1e-15
>seq752
Length=193215
Score = 336 bits (372), Expect = 2e-87
Identities = 482/670 (72%), Gaps = 8/670 (1%)
Strand=Plus/Minus
Query 159976 TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTCGCAACGAGCTGGTATAC 160035
||| ||| | ||| | || || ||| |||| || ||||| || | ||| ||||||||
Sbjct 189601 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 189542
Query 160036 CCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTTCTTA-CAGCGTCAGTTAGC 160093
|||||| | |||||||||||| | || || ||||| ||||||| | || |||||
Sbjct 189541 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 189484
Query 160094 ACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGG 160152
||||| || | | | | ||||| || || || || || |||||||| || |||||
Sbjct 189483 ACTCCTGCCAATAGTTTAGCACATTCG-TTGTTGTTACTATGAGGTCCTGAAGCCCAAGG 189425
Query 160153 GGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGC 160212
||||| | ||| |||| | || || || |||| ||||| || ||||| || |
Sbjct 189424 AGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCAC 189365
Query 160213 CTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCC 160271
|||| ||||| || || ||| | ||||| ||||||| || || ||| || | | |
Sbjct 189364 TTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGTTCAAT-TGC 189306
Query 160272 GTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCA 160331
| ||||| ||||| || || ||||||| ||| |||||||| ||||| |||||||| |
Sbjct 189305 GACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGA 189246
Query 160332 TCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCT 160391
| || ||| | |||||||| ||||||| || || || ||||| || || || || |
Sbjct 189245 TTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATAT 189186
Query 160392 TTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGA 160451
|| ||||| | | || | ||||| ||||| || ||||| | ||||| || |||||||
Sbjct 189185 TTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGA 189126
Query 160452 TGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAG 160511
|||||||||| ||| || | || | || ||||| | || |||||||| | ||||||||
Sbjct 189125 TGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGTAG 189066
Query 160512 AGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACAC 160571
| || || | | ||||||||| || |||||||| || |||||| | | || |
Sbjct 189065 AAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACCC 189006
Query 160572 AGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTA 160631
| | ||||| |||||||| |||||||| || |||||||| ||||| || ||||| ||
Sbjct 189005 AAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGG 188946
Query 160632 TTGCGTTTTC 160641
|||| |||||
Sbjct 188945 TTGCTTTTTC 188936
>seq1263
Length=120960
Score = 289 bits (320), Expect = 3e-73
Identities = 418/581 (72%), Gaps = 8/581 (1%)
Strand=Plus/Plus
Query 159976 TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTCGCAACGAGCTGGTATAC 160035
||| ||| | ||| | || || ||| |||| || ||||| || | ||| ||||||||
Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865
Query 160036 CCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTTCTTA-CAGCGTCAGTTAGC 160093
|||||| | |||||||||||| | || || ||||| ||||||| | || |||||
Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 54923
Query 160094 ACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGG 160152
||||| || | | | | ||||| || || || || ||||||||||| || |||||
Sbjct 54924 ACTCCTGCCAATAGTTTAGCACATTCG-TTGTTGTTACTATGGGGTCCTGAAGCCCAAGG 54982
Query 160153 GGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGC 160212
||||| | ||| |||| | || || || |||| ||||| || ||||| || ||
Sbjct 54983 AGATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGC 55042
Query 160213 CTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCC 160271
|||| ||||| || || ||| | ||||| |||||||| || || ||| || | | |
Sbjct 55043 TTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGC 55101
Query 160272 GTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCA 160331
| ||||| ||||| || || ||||||| ||| |||||||| ||||| |||||||| |
Sbjct 55102 GACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGA 55161
Query 160332 TCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCT 160391
| || ||| | |||||||| ||||||| || || || ||||| || || || || |
Sbjct 55162 TTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATAT 55221
Query 160392 TTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGA 160451
|| ||||| | | || | ||||| ||||| || ||||| | ||||| || |||||||
Sbjct 55222 TTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGA 55281
Query 160452 TGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAG 160511
|||||||||| ||| || | || | || ||||| | || |||||||| | || |||||
Sbjct 55282 TGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAG 55341
Query 160512 AGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTT 160552
| || || | | ||||||||| || |||||||| |||
Sbjct 55342 AAAATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382
>seq2510
Length=74850
Score = 102 bits (112), Expect = 9e-17
Identities = 130/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 160718 GGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAA 160777
||||| ||||| || || || || || || ||| | || || || | ||||| |||
Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941
Query 160778 GATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCA 160837
||||| ||||||||||| ||||||||||| || || || | || ||||| | |||||
Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881
Query 160838 TGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCC 160896
||| | || || || || || ||||| ||| |||| ||||| || || ||||| ||
Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 56822
>seq587
Length=401750
Score = 98.7 bits (108), Expect = 1e-15
Identities = 119/162 (73%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 159204 ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 159263
|| ||||| |||||||| || |||||||| |||||||| || | ||||| |||| |||
Sbjct 44409 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGT 44468
Query 159264 CGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATG 159323
||||| | || || | || ||| | | || | || || |||||||||||||||
Sbjct 44469 CGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAGTTATG 44528
Query 159324 CATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCT 159365
||||| | ||| | || ||||| || | ||||| ||||||
Sbjct 44529 CATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 552281829507520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |