Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq752 334 9e-87 seq1263 288 1e-72 seq2510 125 9e-24 seq37 104 3e-17 seq587 89.7 6e-13 >seq752 Length=193215 Score = 334 bits (370), Expect = 9e-87 Identities = 477/668 (71%), Gaps = 4/668 (1%) Strand=Plus/Minus Query 180098 TGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACAC 180157 ||| ||| | || | || || ||| |||| || ||| | ||||| || ||||| || Sbjct 189601 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 189542 Query 180158 CCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGCTGTCTCG 180215 || || | ||| ||||||| | ||||| ||| | ||||||| | || || || ||| Sbjct 189541 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 189484 Query 180216 ACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGG 180275 || ||||| | | | | ||||| | | |||| || |||||||| | || || Sbjct 189483 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGAAGCCCAAGGA 189424 Query 180276 AATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCC 180335 |||| || ||||||||| | || || || |||| || || ||||||||||| | Sbjct 189423 GATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCACT 189364 Query 180336 TTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGT 180395 |||| ||||| || |||||| |||| || ||||||| || || | || | || Sbjct 189363 TTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGTTCAATTGCGA 189304 Query 180396 CCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATC 180455 ||||| ||||| || |||||||||| ||| || ||||| ||||| ||||| || || Sbjct 189303 CCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATT 189244 Query 180456 TACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTT 180515 || ||||| |||||||| ||||||||||||| ||| |||||| ||||| || || ||| Sbjct 189243 TATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTT 189184 Query 180516 AGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATG 180575 ||||| | || ||| | || || || || || ||||| | ||||| || ||||||||| Sbjct 189183 CGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATG 189124 Query 180576 GGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAG 180635 |||||||| ||| || | || | || |||||| || |||||||| | ||||| || Sbjct 189123 GGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGTAGAA 189064 Query 180636 AACACACTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAA 180695 || || | | ||||||||| || ||||| || || || ||| | |||| ||| Sbjct 189063 AATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACCCAA 189004 Query 180696 GAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATT 180755 | || |||||||| || |||||||| || |||||||| ||||| || ||||| || || Sbjct 189003 GCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTT 188944 Query 180756 GCATTTTC 180763 || ||||| Sbjct 188943 GCTTTTTC 188936 >seq1263 Length=120960 Score = 288 bits (318), Expect = 1e-72 Identities = 413/579 (71%), Gaps = 4/579 (1%) Strand=Plus/Plus Query 180098 TGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACAC 180157 ||| ||| | || | || || ||| |||| || ||| | ||||| || ||||| || Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865 Query 180158 CCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGCTGTCTCG 180215 || || | ||| ||||||| | ||||| ||| | ||||||| | || || || ||| Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 54923 Query 180216 ACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGG 180275 || ||||| | | | | ||||| | | |||| ||||||||||| | || || Sbjct 54924 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGA 54983 Query 180276 AATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCC 180335 |||| || ||||||||| | || || || |||| || || ||||||||||| || Sbjct 54984 GATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCT 55043 Query 180336 TTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGT 180395 |||| ||||| || |||||| |||| || |||||||| || || | || | || Sbjct 55044 TTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATTGCGA 55103 Query 180396 CCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATC 180455 ||||| ||||| || |||||||||| ||| || ||||| ||||| ||||| || || Sbjct 55104 CCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATT 55163 Query 180456 TACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTT 180515 || ||||| |||||||| ||||||||||||| ||| |||||| ||||| || || ||| Sbjct 55164 TATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTT 55223 Query 180516 AGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATG 180575 ||||| | || ||| | || || || || || ||||| | ||||| || ||||||||| Sbjct 55224 CGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATG 55283 Query 180576 GGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAG 180635 |||||||| ||| || | || | || |||||| || |||||||| | | ||| || Sbjct 55284 GGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGAA 55343 Query 180636 AACACACTGTATGAAGATGGAGAACAAGCAAACACCTTT 180674 || || | | ||||||||| || ||||| || ||| Sbjct 55344 AATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382 >seq2510 Length=74850 Score = 125 bits (138), Expect = 9e-24 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 180840 GGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAA 180899 ||||| ||||| ||||| || || || || ||| | || || ||| | ||||| ||| Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941 Query 180900 GATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGGACTACGTGCA 180959 |||||||| || ||||| ||||||||||| || || || || || ||||| | ||||| Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881 Query 180960 TGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAGAAGTTCTACC 181018 ||| |||| || ||||| || || |||||| | || |||||||| || |||||||| Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 56822 >seq37 Length=530226 Score = 104 bits (114), Expect = 3e-17 Identities = 182/264 (69%), Gaps = 1/264 (0%) Strand=Plus/Plus Query 180647 TGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAAC 180706 ||||||||| || || || || ||| || ||| || |||| |||| | ||||| Sbjct 49820 TGAAGATGGTGATTGTGCTAATACATTTTGTGCGTTTAATCCAACCCAAGTTGGAGAAAC 49879 Query 180707 TTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAA 180766 ||| || |||||||| || |||||||| ||||| || ||||| || || ||||| || Sbjct 49880 TTATTCAATGGTCACCGCTAACCGCTT-TGGTCCCAAATCTTTGGGGTTTTTTTTTCCAA 49938 Query 180767 CAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTC 180826 || | ||| | |||||||| |||| ||||| | || | ||| |||||| | Sbjct 49939 TAAATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACCGGTTTATGGATGAGAGC 49998 Query 180827 TATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGAT 180886 | | | | | ||||| ||| | ||||| || | || | ||||| ||||| || Sbjct 49999 TCCTAGAGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGCTTCGTTTCCCAAGAAAT 50058 Query 180887 CAGAGCAGCAGAAGATCCTGAGTT 180910 | | ||||| ||||||||||| || Sbjct 50059 CTGTGCAGCGGAAGATCCTGAATT 50082 >seq587 Length=401750 Score = 89.7 bits (98), Expect = 6e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 179686 ACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGA 179745 || ||||| |||||||| || |||||||| |||||||| || | |||| ||||||| Sbjct 44409 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGT 44468 Query 179746 CGTGTCCTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATG 179805 ||||| |||| || | || || | | || | || | ||||||||||||||| Sbjct 44469 CGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAGTTATG 44528 Query 179806 CATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCT 179847 ||||| | ||| | || ||||| || | ||||| |||||| Sbjct 44529 CATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610117746966720