Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_027132.1
Length=190768
Score E
Sequences producing significant alignments: (Bits) Value
seq752 334 9e-87
seq1263 288 1e-72
seq2510 125 9e-24
seq37 104 3e-17
seq587 89.7 6e-13
>seq752
Length=193215
Score = 334 bits (370), Expect = 9e-87
Identities = 477/668 (71%), Gaps = 4/668 (1%)
Strand=Plus/Minus
Query 180098 TGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACAC 180157
||| ||| | || | || || ||| |||| || ||| | ||||| || ||||| ||
Sbjct 189601 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 189542
Query 180158 CCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGCTGTCTCG 180215
|| || | ||| ||||||| | ||||| ||| | ||||||| | || || || |||
Sbjct 189541 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 189484
Query 180216 ACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGG 180275
|| ||||| | | | | ||||| | | |||| || |||||||| | || ||
Sbjct 189483 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGAAGCCCAAGGA 189424
Query 180276 AATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCC 180335
|||| || ||||||||| | || || || |||| || || ||||||||||| |
Sbjct 189423 GATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCACT 189364
Query 180336 TTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGT 180395
|||| ||||| || |||||| |||| || ||||||| || || | || | ||
Sbjct 189363 TTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGTTCAATTGCGA 189304
Query 180396 CCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATC 180455
||||| ||||| || |||||||||| ||| || ||||| ||||| ||||| || ||
Sbjct 189303 CCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATT 189244
Query 180456 TACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTT 180515
|| ||||| |||||||| ||||||||||||| ||| |||||| ||||| || || |||
Sbjct 189243 TATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTT 189184
Query 180516 AGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATG 180575
||||| | || ||| | || || || || || ||||| | ||||| || |||||||||
Sbjct 189183 CGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATG 189124
Query 180576 GGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAG 180635
|||||||| ||| || | || | || |||||| || |||||||| | ||||| ||
Sbjct 189123 GGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGTAGAA 189064
Query 180636 AACACACTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAA 180695
|| || | | ||||||||| || ||||| || || || ||| | |||| |||
Sbjct 189063 AATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACCCAA 189004
Query 180696 GAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATT 180755
| || |||||||| || |||||||| || |||||||| ||||| || ||||| || ||
Sbjct 189003 GCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTT 188944
Query 180756 GCATTTTC 180763
|| |||||
Sbjct 188943 GCTTTTTC 188936
>seq1263
Length=120960
Score = 288 bits (318), Expect = 1e-72
Identities = 413/579 (71%), Gaps = 4/579 (1%)
Strand=Plus/Plus
Query 180098 TGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACAC 180157
||| ||| | || | || || ||| |||| || ||| | ||||| || ||||| ||
Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865
Query 180158 CCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGCTGTCTCG 180215
|| || | ||| ||||||| | ||||| ||| | ||||||| | || || || |||
Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 54923
Query 180216 ACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGG 180275
|| ||||| | | | | ||||| | | |||| ||||||||||| | || ||
Sbjct 54924 ACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGA 54983
Query 180276 AATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCC 180335
|||| || ||||||||| | || || || |||| || || ||||||||||| ||
Sbjct 54984 GATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCT 55043
Query 180336 TTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGT 180395
|||| ||||| || |||||| |||| || |||||||| || || | || | ||
Sbjct 55044 TTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATTGCGA 55103
Query 180396 CCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATC 180455
||||| ||||| || |||||||||| ||| || ||||| ||||| ||||| || ||
Sbjct 55104 CCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATT 55163
Query 180456 TACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTT 180515
|| ||||| |||||||| ||||||||||||| ||| |||||| ||||| || || |||
Sbjct 55164 TATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTT 55223
Query 180516 AGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATG 180575
||||| | || ||| | || || || || || ||||| | ||||| || |||||||||
Sbjct 55224 CGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATG 55283
Query 180576 GGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAG 180635
|||||||| ||| || | || | || |||||| || |||||||| | | ||| ||
Sbjct 55284 GGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGAA 55343
Query 180636 AACACACTGTATGAAGATGGAGAACAAGCAAACACCTTT 180674
|| || | | ||||||||| || ||||| || |||
Sbjct 55344 AATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382
>seq2510
Length=74850
Score = 125 bits (138), Expect = 9e-24
Identities = 135/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 180840 GGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAA 180899
||||| ||||| ||||| || || || || ||| | || || ||| | ||||| |||
Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941
Query 180900 GATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGGACTACGTGCA 180959
|||||||| || ||||| ||||||||||| || || || || || ||||| | |||||
Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881
Query 180960 TGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAGAAGTTCTACC 181018
||| |||| || ||||| || || |||||| | || |||||||| || ||||||||
Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 56822
>seq37
Length=530226
Score = 104 bits (114), Expect = 3e-17
Identities = 182/264 (69%), Gaps = 1/264 (0%)
Strand=Plus/Plus
Query 180647 TGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAAC 180706
||||||||| || || || || ||| || ||| || |||| |||| | |||||
Sbjct 49820 TGAAGATGGTGATTGTGCTAATACATTTTGTGCGTTTAATCCAACCCAAGTTGGAGAAAC 49879
Query 180707 TTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAA 180766
||| || |||||||| || |||||||| ||||| || ||||| || || ||||| ||
Sbjct 49880 TTATTCAATGGTCACCGCTAACCGCTT-TGGTCCCAAATCTTTGGGGTTTTTTTTTCCAA 49938
Query 180767 CAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTC 180826
|| | ||| | |||||||| |||| ||||| | || | ||| |||||| |
Sbjct 49939 TAAATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACCGGTTTATGGATGAGAGC 49998
Query 180827 TATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGAT 180886
| | | | | ||||| ||| | ||||| || | || | ||||| ||||| ||
Sbjct 49999 TCCTAGAGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGCTTCGTTTCCCAAGAAAT 50058
Query 180887 CAGAGCAGCAGAAGATCCTGAGTT 180910
| | ||||| ||||||||||| ||
Sbjct 50059 CTGTGCAGCGGAAGATCCTGAATT 50082
>seq587
Length=401750
Score = 89.7 bits (98), Expect = 6e-13
Identities = 117/162 (72%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 179686 ACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGA 179745
|| ||||| |||||||| || |||||||| |||||||| || | |||| |||||||
Sbjct 44409 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGT 44468
Query 179746 CGTGTCCTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATG 179805
||||| |||| || | || || | | || | || | |||||||||||||||
Sbjct 44469 CGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAGTTATG 44528
Query 179806 CATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCT 179847
||||| | ||| | || ||||| || | ||||| ||||||
Sbjct 44529 CATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 610117746966720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |