Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq715 150 2e-31
seq1535 125 1e-23
>seq715
Length=381403
Score = 150 bits (166), Expect = 2e-31
Identities = 389/584 (67%), Gaps = 13/584 (2%)
Strand=Plus/Plus
Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673
||||| ||||| || || || ||||| ||||||| || || ||||| || || ||
Sbjct 115245 AAGCACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTC 115304
Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAA 39732
| |||||||| | ||| |||||||| | ||||||||| || ||| ||| | ||||| ||
Sbjct 115305 AACCCAGGCATCA-ACCCCGCTTTTTCAACCAAAATATCGC-GCAGAAGCTTCCAGAGAA 115362
Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTGTATCATTA 39790
||| || || || || || || || | || | ||| || | ||||| ||| |
Sbjct 115363 GAAAATCCCCTCCACGCAAGCGAACGCGAGGAGCCGCTCCGCGAACGACTTGGATCCGTC 115422
Query 39791 TGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850
||||| ||| | ||||| ||||| ||||||| || || |||| ||||| || ||
Sbjct 115423 G--ATCCATTTCAGCGCCCACTCAGCCTTCTTCTGGACGCACGGCACCGTTTCGATGGCG 115480
Query 39851 TTAAAGAGATAATGTTTTTCATCACT---ATCTTTAACATATGTATCTATTAACAGACTA 39907
| ||||| | |||| ||| ||| | ||| || || || || || | | ||||||
Sbjct 115481 TGGAAGAGTT--TGTTCTTC-TCATTGGAATCCTTGACGTAGGTTTCGAGCAGGAGACTA 115537
Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 39967
||||| || || || ||||| || || || ||||| || ||||| || | || ||
Sbjct 115538 TACATCTCAGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTATAAGGCACGAGCCTCC 115597
Query 39968 GTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTA 40027
| | || | ||| || ||| | || | |||||| || || |||||
Sbjct 115598 GCCACCTGGATCTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATGCCATCGGAG 115657
Query 40028 GCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTC 40087
||||| || ||||| | || || | || || | || || | || | |||
Sbjct 115658 GCGGCGAAGAATGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCAGCGGTGAGAGAGTTC 115717
Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147
|||| | || || | || | || || || || |||||||| || || |||||||||
Sbjct 115718 CAGTGAGGGAGGTCCTGGGACAAGTCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCTGCC 115777
Query 40148 TTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAAT 40191
|| |||||||| | ||| || || | ||||| || || || ||
Sbjct 115778 TTCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACAT 115821
>seq1535
Length=214281
Score = 125 bits (138), Expect = 1e-23
Identities = 150/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
|||||| || || | || | ||||| | |||| | || |||| ||| || | ||| ||
Sbjct 153881 TCCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAACATTGGGACAATGCC 153822
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
||||||| | |||||||||||| ||||||||| || | || ||||| ||| ||| ||
Sbjct 153821 ATTAGATGTCCCATTTGTTCCACGAATATAACTCCCAGTAGCTCGAATGTTATGAATTGA 153762
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| || |||||||| || ||| ||| | ||||| |||||| || ||||||||
Sbjct 153761 GACCCCAATTCCTCCAGCTGATTTGCTGATGACCGCACACTCTTTCAAGGTATCATATAT 153702
Query 69930 ACCCTCTATGCTATCATCTATCAT 69953
||||| ||||||||||| ||||
Sbjct 153701 CCCCTCAATGCTATCATCCTTCAT 153678
Score = 109 bits (120), Expect = 8e-19
Identities = 122/163 (75%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 69791 TCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTG 69850
||| ||| || | ||| ||||||||| | |||||||||||| ||||||||| || | |
Sbjct 168992 TCAACATTGGGACAATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTCCCGGTAG 168933
Query 69851 CGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAAC 69910
| ||||| ||| ||| || | || |||||||| ||| |||| ||| | ||||||
Sbjct 168932 CTCGAATGTTATGAATTGAGACCCCAATTCCTCCGGCCGATTTACTGATGACAGCACACT 168873
Query 69911 GTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCAT 69953
|||||| || ||| || | || || |||| ||||||| ||||
Sbjct 168872 CTTTCAAGGTATCACATGTTCCTTCAATGCCATCATCTTTCAT 168830
Score = 89.7 bits (98), Expect = 7e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
||||| |||||||| | || ||||| || |||||||||||| | | || | || | |
Sbjct 153545 GTTCCTGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTGGGACATCATGTGG 153486
Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110
||||| | || | || || ||||| || |||||||| | || || | |||||||
Sbjct 153485 TATGTCTGGATGACAGAATCAATATCATTCTTGTGAATTCCAACAGCAACCCTCATCAAC 153426
Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170
|| |||||||| | ||| || ||| | | ||| | ||||| || |||| ||
Sbjct 153425 ATGTGCTGAGGCCTTTCAACAACTTTCCCTTGGACTTTTAGAAGGTAGGACCTTTCAAGG 153366
Query 70171 GTTTTAAACCCAAAATA 70187
||||| |||||||| ||
Sbjct 153365 GTTTTGAACCCAAAGTA 153349
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686670365369160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |