Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq715 150 2e-31 seq1535 125 1e-23 >seq715 Length=381403 Score = 150 bits (166), Expect = 2e-31 Identities = 389/584 (67%), Gaps = 13/584 (2%) Strand=Plus/Plus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 ||||| ||||| || || || ||||| ||||||| || || ||||| || || || Sbjct 115245 AAGCACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTC 115304 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAA 39732 | |||||||| | ||| |||||||| | ||||||||| || ||| ||| | ||||| || Sbjct 115305 AACCCAGGCATCA-ACCCCGCTTTTTCAACCAAAATATCGC-GCAGAAGCTTCCAGAGAA 115362 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTGTATCATTA 39790 ||| || || || || || || || | || | ||| || | ||||| ||| | Sbjct 115363 GAAAATCCCCTCCACGCAAGCGAACGCGAGGAGCCGCTCCGCGAACGACTTGGATCCGTC 115422 Query 39791 TGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 ||||| ||| | ||||| ||||| ||||||| || || |||| ||||| || || Sbjct 115423 G--ATCCATTTCAGCGCCCACTCAGCCTTCTTCTGGACGCACGGCACCGTTTCGATGGCG 115480 Query 39851 TTAAAGAGATAATGTTTTTCATCACT---ATCTTTAACATATGTATCTATTAACAGACTA 39907 | ||||| | |||| ||| ||| | ||| || || || || || | | |||||| Sbjct 115481 TGGAAGAGTT--TGTTCTTC-TCATTGGAATCCTTGACGTAGGTTTCGAGCAGGAGACTA 115537 Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 39967 ||||| || || || ||||| || || || ||||| || ||||| || | || || Sbjct 115538 TACATCTCAGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTATAAGGCACGAGCCTCC 115597 Query 39968 GTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTA 40027 | | || | ||| || ||| | || | |||||| || || ||||| Sbjct 115598 GCCACCTGGATCTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATGCCATCGGAG 115657 Query 40028 GCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTC 40087 ||||| || ||||| | || || | || || | || || | || | ||| Sbjct 115658 GCGGCGAAGAATGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCAGCGGTGAGAGAGTTC 115717 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 |||| | || || | || | || || || || |||||||| || || ||||||||| Sbjct 115718 CAGTGAGGGAGGTCCTGGGACAAGTCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCTGCC 115777 Query 40148 TTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAAT 40191 || |||||||| | ||| || || | ||||| || || || || Sbjct 115778 TTCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACAT 115821 >seq1535 Length=214281 Score = 125 bits (138), Expect = 1e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | || | ||||| | |||| | || |||| ||| || | ||| || Sbjct 153881 TCCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAACATTGGGACAATGCC 153822 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||||||| ||||||||| || | || ||||| ||| ||| || Sbjct 153821 ATTAGATGTCCCATTTGTTCCACGAATATAACTCCCAGTAGCTCGAATGTTATGAATTGA 153762 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | || |||||||| || ||| ||| | ||||| |||||| || |||||||| Sbjct 153761 GACCCCAATTCCTCCAGCTGATTTGCTGATGACCGCACACTCTTTCAAGGTATCATATAT 153702 Query 69930 ACCCTCTATGCTATCATCTATCAT 69953 ||||| ||||||||||| |||| Sbjct 153701 CCCCTCAATGCTATCATCCTTCAT 153678 Score = 109 bits (120), Expect = 8e-19 Identities = 122/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 69791 TCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTG 69850 ||| ||| || | ||| ||||||||| | |||||||||||| ||||||||| || | | Sbjct 168992 TCAACATTGGGACAATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTCCCGGTAG 168933 Query 69851 CGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAAC 69910 | ||||| ||| ||| || | || |||||||| ||| |||| ||| | |||||| Sbjct 168932 CTCGAATGTTATGAATTGAGACCCCAATTCCTCCGGCCGATTTACTGATGACAGCACACT 168873 Query 69911 GTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCAT 69953 |||||| || ||| || | || || |||| ||||||| |||| Sbjct 168872 CTTTCAAGGTATCACATGTTCCTTCAATGCCATCATCTTTCAT 168830 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| |||||||| | || ||||| || |||||||||||| | | || | || | | Sbjct 153545 GTTCCTGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTGGGACATCATGTGG 153486 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||| | || | || || ||||| || |||||||| | || || | ||||||| Sbjct 153485 TATGTCTGGATGACAGAATCAATATCATTCTTGTGAATTCCAACAGCAACCCTCATCAAC 153426 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || |||||||| | ||| || ||| | | ||| | ||||| || |||| || Sbjct 153425 ATGTGCTGAGGCCTTTCAACAACTTTCCCTTGGACTTTTAGAAGGTAGGACCTTTCAAGG 153366 Query 70171 GTTTTAAACCCAAAATA 70187 ||||| |||||||| || Sbjct 153365 GTTTTGAACCCAAAGTA 153349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686670365369160