Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq715 138 9e-28 >seq715 Length=381403 Score = 138 bits (152), Expect = 9e-28 Identities = 241/344 (70%), Gaps = 5/344 (1%) Strand=Plus/Minus Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || || || || || || ||||| || || ||||| || || ||||| ||||| ||| | Sbjct 115584 TTATACGGCTTCCAGATCGCCATCGAGAACATTCACTCTGAGATGTATAGTCTCCTGCTC 115525 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || || ||| |||| ||| | |||||| | | | || | || || ||||| || Sbjct 115524 GAAACCTACGTCAAGGATTCCAATGAGAAGAACAAACTCTTCCACGCCATCGAAACGGTG 115465 Query 44063 CC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTT 44121 || |||| | | | || || || ||||| || |||||||| | | | || || Sbjct 115464 CCGTGCGTCCAGA-AGAAGGCTGAGTGGGCGCTGAAATGGATCGACGGATCCAAGTCGTT 115406 Query 44122 TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TG 44180 | || || || ||||||| || ||||| || |||||||| || ||| || || Sbjct 115405 CGCGGAGCGGCTCCTCGCGTTCGCTTGCGTGGAGGGGATTTTCTTCTCTGGAAGCTTCTG 115346 Query 44181 CGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGT 44240 || | ||||||||||| || || || |||| ||||||||||||||| || || || |||| Sbjct 115345 CG-CGATATTTTGGTTGAAAAAGCGGGGTT-GATGCCTGGGTTGACTTTCTCGAACGAGT 115288 Query 44241 TAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 | || || ||||||||| | || |||||||| || |||||| Sbjct 115287 TGATCTCGCGAGATGAAGGCCTTCACTGCGATTTCGCGTGCTTG 115244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397321487102845