Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq177 116 3e-21 seq670 104 2e-17 seq4991 98.7 8e-16 seq1068 98.7 8e-16 seq1034 89.7 4e-13 seq536 89.7 4e-13 >seq177 Length=344453 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||| | || | ||| | || | ||| || || || ||||| ||||| ||| Sbjct 68474 TGCCGCCGCGGAGACGGAGTACAAGGTGGAGCGTTGACTCCTTCTGAATGTTGTAATCGG 68415 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| |||| ||||||||||| |||||| | || |||||||| |||||||| | Sbjct 68414 CCAAGGTGCGGCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAG 68355 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| || | | | || | || || | | || | Sbjct 68354 GAATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTATCGGAGCTCTCGA 68295 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || | ||||| || || |||||||| ||||| ||||| Sbjct 68294 CCTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 68246 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||| | ||| | || | || | ||| || || || ||||| ||||||||| Sbjct 68702 TGCCGCCGCGGAGCCGGAGGACAAGGTGGAGCGTTGACTCCTTCTGAATGTTGTAGTCGG 68643 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| |||| ||||||||||| |||||| | || |||||||| |||||||| | Sbjct 68642 CCAAGGTGCGGCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAG 68583 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || |||||| |||| | | || | ||||| | | |||| Sbjct 68582 GAATCCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTATCAATGGTGTCGGAGCTCTCAA 68523 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | || ||||| || || || || ||||| ||||| Sbjct 68522 CCTCGAGCGTAATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 68474 >seq670 Length=332965 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || ||||| ||| || | | || |||||||||||||||| ||| Sbjct 147837 GTAGACTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTCTTCGAGCTGTTTTCCG 147778 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| ||||| || || | || || || || ||||||| || Sbjct 147777 GCGAAGATGAGGCGCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGACTTG 147718 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| ||||| | | ||| || ||||| || || | ||||| || || ||| Sbjct 147717 ACATTATCTATGGTGTCAGAGCTTTCGACCTCTAGCGTGATTGTCTTGCCGGTTAGGGTT 147658 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 147657 TTGACGAAGATCTGCAT 147641 >seq4991 Length=48504 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 |||||||| | || || || |||||||| || ||||| || |||| || |||| || Sbjct 8610 ACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTCAGCAAGTGTT-CGACCGTCCTC 8668 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||||||| || || | || || | ||| ||||| || || | ||||| || || Sbjct 8669 GAGCTGTTTCCCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATGCCCTCCTTGTCCTG 8728 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||| ||| |||| | || | ||||| | | ||||| || ||||| |||| ||| Sbjct 8729 GATTTTGGCCTTCACATTGTCAATGGTGTCAGAGCTCTCAACCTCCAGAGTGATAGTTTT 8788 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||||| || || || ||||| || |||||| Sbjct 8789 GCCCGTGAGTGTCTTGACAAAAATCTGCATA 8819 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | |||||||| | || || || |||||||| |||||||| | | Sbjct 8820 CCACCACGCAGACGGAGAACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCAC-C 8878 Query 27081 ATGT-TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | || | || | ||||| ||||| || || || | || || | ||| |||||||| || Sbjct 8879 AAGTGTACGACCATCTTCAAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGTGG 8938 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || ||||| || ||| ||| | | || | || || | | ||| || Sbjct 8939 GATGCCTTCCTTATCCTGAATTTTGGCTTTGACATTGTCAATGGTATCAGAGCTTTCCAC 8998 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||| || | ||| || || || |||||||||||||||||||| Sbjct 8999 CTCCAAAGTGATTGTTTTCCCAGTGAGTGTTTTCACAAAGATTTGCAT 9046 >seq1068 Length=260286 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||| ||| || |||| |||||||||||||||| ||| Sbjct 186295 GTGGACTCCTTCTGGATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGCTGTTTCCCG 186354 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || ||||| ||||| || || | ||| || || || ||||||| || Sbjct 186355 GCGAAGATAAGGCGCTGCTGATCGGGAGGAATACCTTCCTTGTCTTGGATCTTGGCCTTG 186414 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | ||||| ||||| | | || || || || || || | ||||| || || ||| Sbjct 186415 ACGTTGTCTACGGTGTCGGAGCTCTCGACCTCGAGCGTGATTGTCTTGCCGGTTAGGGTT 186474 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 186475 TTGACGAAGATCTGCAT 186491 >seq1034 Length=134858 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || ||||| ||||| | | |||| | || || ||||| ||||| Sbjct 72059 GTGGACTCCTTCTGGATATTATAGTCCGCAAGGGTGCGGCCATCCTCCAGCTGCTTACCA 72000 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || |||| || | ||| ||||| || || | ||||| || || ||||| |||| Sbjct 71999 GCAAAAATAAGTCTCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGAATCTTTGCTTTC 71940 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | |||||||| | |||||| || || || || | ||||| || || ||| Sbjct 71939 ACATTATCAATAGTGTCTGAGCTTTCAACCTCAAGGGTGATGGTCTTGCCAGTAAGTGTT 71880 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||||||||| Sbjct 71879 TTCACGAAGATTTGCAT 71863 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | ||||| ||||| || | || || ||||| ||||||||||| || Sbjct 72775 TGCCACCACGAAGCCGCAGCACCAAGTGAAGGGTTGACTCTTTCTGAATATTGTAATCTG 72716 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | | | | ||||| || || |||||||| | || || | |||||| || || | Sbjct 72715 CAAGGGTCCTCCCATCTTCAAGTTGCTTACCGGCAAAGATCAGCCTCTGTTGGTCTGGTG 72656 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| ||||| ||||||| || | | || | || |||| |||| Sbjct 72655 GGATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCAA 72596 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || | ||| || | || || || || || |||||||| || |||||| Sbjct 72595 CCTCCAAAGTGATCGTCTTTCCAGTAAGGGTCTTCACAAAAATCTGCATA 72546 >seq536 Length=459343 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || |||||||||||| | | | || |||| |||||||| || ||| Sbjct 381414 GTGGACTCCTTCTGGATATTGTAGTCGGCGAGGGTCCGACCGTCCTCGAGCTGCTTCCCG 381355 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| |||||||| || | || || || || |||||| || Sbjct 381354 GCGAAGATGAGCCGCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTG 381295 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || || || | ||||| || || ||| Sbjct 381294 ACGTTGTCGATCGTGTCGGAACTCTCGACCTCAAGGGTAATGGTCTTGCCAGTGAGCGTT 381235 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||||||||| Sbjct 381234 TTCACGAAGATTTGCAT 381218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424790587459128