Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq177 116 3e-21
seq670 104 2e-17
seq4991 98.7 8e-16
seq1068 98.7 8e-16
seq1034 89.7 4e-13
seq536 89.7 4e-13
>seq177
Length=344453
Score = 116 bits (128), Expect = 3e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078
|||| ||||| | || | ||| | || | ||| || || || ||||| ||||| |||
Sbjct 68474 TGCCGCCGCGGAGACGGAGTACAAGGTGGAGCGTTGACTCCTTCTGAATGTTGTAATCGG 68415
Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138
|| | |||| |||| ||||||||||| |||||| | || |||||||| |||||||| |
Sbjct 68414 CCAAGGTGCGGCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAG 68355
Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198
| | ||||| || || ||||||| || | | | || | || || | | || |
Sbjct 68354 GAATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTATCGGAGCTCTCGA 68295
Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
| || ||||| || | ||||| || || |||||||| ||||| |||||
Sbjct 68294 CCTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 68246
Score = 116 bits (128), Expect = 3e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078
|||| ||||| | ||| | || | || | ||| || || || ||||| |||||||||
Sbjct 68702 TGCCGCCGCGGAGCCGGAGGACAAGGTGGAGCGTTGACTCCTTCTGAATGTTGTAGTCGG 68643
Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138
|| | |||| |||| ||||||||||| |||||| | || |||||||| |||||||| |
Sbjct 68642 CCAAGGTGCGGCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAG 68583
Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198
| | ||||| || || |||||| |||| | | || | ||||| | | ||||
Sbjct 68582 GAATCCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTATCAATGGTGTCGGAGCTCTCAA 68523
Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
| || || || || | || ||||| || || || || ||||| |||||
Sbjct 68522 CCTCGAGCGTAATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 68474
>seq670
Length=332965
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
||||| || || || || ||||| ||| || | | || |||||||||||||||| |||
Sbjct 147837 GTAGACTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTCTTCGAGCTGTTTTCCG 147778
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | ||||| ||||| ||||| || || | || || || || ||||||| ||
Sbjct 147777 GCGAAGATGAGGCGCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGACTTG 147718
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | |||| ||||| | | ||| || ||||| || || | ||||| || || |||
Sbjct 147717 ACATTATCTATGGTGTCAGAGCTTTCGACCTCTAGCGTGATTGTCTTGCCGGTTAGGGTT 147658
Query 27231 TTCACAAAGATTTGCAT 27247
|| || ||||| |||||
Sbjct 147657 TTGACGAAGATCTGCAT 147641
>seq4991
Length=48504
Score = 98.7 bits (108), Expect = 8e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097
|||||||| | || || || |||||||| || ||||| || |||| || |||| ||
Sbjct 8610 ACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTCAGCAAGTGTT-CGACCGTCCTC 8668
Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157
||||||||| || || | || || | ||| ||||| || || | ||||| || ||
Sbjct 8669 GAGCTGTTTCCCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATGCCCTCCTTGTCCTG 8728
Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217
||| ||| |||| | || | ||||| | | ||||| || ||||| |||| |||
Sbjct 8729 GATTTTGGCCTTCACATTGTCAATGGTGTCAGAGCTCTCAACCTCCAGAGTGATAGTTTT 8788
Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|||||| || || || ||||| || ||||||
Sbjct 8789 GCCCGTGAGTGTCTTGACAAAAATCTGCATA 8819
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| || |||| || | |||||||| | || || || |||||||| |||||||| | |
Sbjct 8820 CCACCACGCAGACGGAGAACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCAC-C 8878
Query 27081 ATGT-TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
| || | || | ||||| ||||| || || || | || || | ||| |||||||| ||
Sbjct 8879 AAGTGTACGACCATCTTCAAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGTGG 8938
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| || || ||||| || ||| ||| | | || | || || | | ||| ||
Sbjct 8939 GATGCCTTCCTTATCCTGAATTTTGGCTTTGACATTGTCAATGGTATCAGAGCTTTCCAC 8998
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| | ||| || | ||| || || || ||||||||||||||||||||
Sbjct 8999 CTCCAAAGTGATTGTTTTCCCAGTGAGTGTTTTCACAAAGATTTGCAT 9046
>seq1068
Length=260286
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || || ||||| ||| || |||| |||||||||||||||| |||
Sbjct 186295 GTGGACTCCTTCTGGATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGCTGTTTCCCG 186354
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | || || ||||| ||||| || || | ||| || || || ||||||| ||
Sbjct 186355 GCGAAGATAAGGCGCTGCTGATCGGGAGGAATACCTTCCTTGTCTTGGATCTTGGCCTTG 186414
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | ||||| ||||| | | || || || || || || | ||||| || || |||
Sbjct 186415 ACGTTGTCTACGGTGTCGGAGCTCTCGACCTCGAGCGTGATTGTCTTGCCGGTTAGGGTT 186474
Query 27231 TTCACAAAGATTTGCAT 27247
|| || ||||| |||||
Sbjct 186475 TTGACGAAGATCTGCAT 186491
>seq1034
Length=134858
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || ||||| ||||| | | |||| | || || ||||| |||||
Sbjct 72059 GTGGACTCCTTCTGGATATTATAGTCCGCAAGGGTGCGGCCATCCTCCAGCTGCTTACCA 72000
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| |||| || | ||| ||||| || || | ||||| || || ||||| ||||
Sbjct 71999 GCAAAAATAAGTCTCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGAATCTTTGCTTTC 71940
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | |||||||| | |||||| || || || || | ||||| || || |||
Sbjct 71939 ACATTATCAATAGTGTCTGAGCTTTCAACCTCAAGGGTGATGGTCTTGCCAGTAAGTGTT 71880
Query 27231 TTCACAAAGATTTGCAT 27247
||||| |||||||||||
Sbjct 71879 TTCACGAAGATTTGCAT 71863
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078
|||| || || | ||||| ||||| || | || || ||||| ||||||||||| ||
Sbjct 72775 TGCCACCACGAAGCCGCAGCACCAAGTGAAGGGTTGACTCTTTCTGAATATTGTAATCTG 72716
Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138
| | | | | | ||||| || || |||||||| | || || | |||||| || || |
Sbjct 72715 CAAGGGTCCTCCCATCTTCAAGTTGCTTACCGGCAAAGATCAGCCTCTGTTGGTCTGGTG 72656
Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198
| | ||||| ||||| ||||||| || | | || | || |||| ||||
Sbjct 72655 GGATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCAA 72596
Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| || | ||| || | || || || || || |||||||| || ||||||
Sbjct 72595 CCTCCAAAGTGATCGTCTTTCCAGTAAGGGTCTTCACAAAAATCTGCATA 72546
>seq536
Length=459343
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || |||||||||||| | | | || |||| |||||||| || |||
Sbjct 381414 GTGGACTCCTTCTGGATATTGTAGTCGGCGAGGGTCCGACCGTCCTCGAGCTGCTTCCCG 381355
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | ||||| ||||| |||||||| || | || || || || |||||| ||
Sbjct 381354 GCGAAGATGAGCCGCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTG 381295
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | ||||| | || || || || || || | ||||| || || |||
Sbjct 381294 ACGTTGTCGATCGTGTCGGAACTCTCGACCTCAAGGGTAATGGTCTTGCCAGTGAGCGTT 381235
Query 27231 TTCACAAAGATTTGCAT 27247
||||| |||||||||||
Sbjct 381234 TTCACGAAGATTTGCAT 381218
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424790587459128
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