Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq1535 118 1e-21
seq318 109 7e-19
seq2451 105 8e-18
seq251 98.7 1e-15
seq1699 82.4 1e-10
>seq1535
Length=214281
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999
||| || ||||| || || ||||| || || ||||| | || ||| ||||| | ||
Sbjct 153558 CTGAGGCCTTGGCGTTCCTGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTG 153499
Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059
||||||| ||| |||||||| | |||||||||||| || | | ||| || || | ||
Sbjct 153498 GGACATCATGTGGTATGTCTGGATGACAGAATCAATATCATTCTTGTGAATTCCAACAGC 153439
Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA 112119
|||| ||| ||||||| ||| || |||| | | | || | || | |||| ||
Sbjct 153438 AACCCTCATCAACATGTGCTGAGGCCTTTCAACAACTTTCCCTTGGACTTTTAGAAGGTA 153379
Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167
| | | ||||||||||||| ||||||||| || ||||| |||| ||
Sbjct 153378 GGACCTTTCAAGGGTTTTGAACCCAAAGTAATCATAATCAAAGTCACG 153331
Score = 100 bits (110), Expect = 4e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999
||| || |||||||| || | ||| ||||| || || | || || ||||| | ||
Sbjct 168711 CTGAGGCCTTGGTGTTCCTGGATTCAAGAGAGTCGGAGAAGCATGTGTGAACCATCTCTG 168652
Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059
||||||| ||| |||||||| | |||||||||||| || | | ||| || || | ||
Sbjct 168651 GGACATCATGTGGTATGTCTGGATGACAGAATCAATATCATTCTTGTGAATTCCAACAGC 168592
Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA 112119
|||| ||| ||||||| ||| || |||| | | | || | || | ||| |
Sbjct 168591 AACCCTCATCAACATGTGCTGAGGCCTTTCAACAACTTTCCCTTGGACTTTTAGAACGGA 168532
Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167
| | ||||||| ||||||| ||| ||||| || ||||| |||| ||
Sbjct 168531 GGACCTCTCAAGTGTTTTGAACCCAGAGTAATCATAATCAAAGTCACG 168484
Score = 82.4 bits (90), Expect = 1e-10
Identities = 115/159 (72%), Gaps = 2/159 (1%)
Strand=Plus/Minus
Query 111211 CTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATC 111270
||| || ||||||| |||| ||||| || ||||||||||| |||||||| || || |
Sbjct 155101 CTCCTCCCTGACATATCTTGGTAGGGCAATCGATGCCAAATTACAAACAGCAGTTTC-TG 155043
Query 111271 CTTATC-TGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAAT 111329
| | ||| ||||| | ||| || || || ||||| ||| ||||| || |||| ||
Sbjct 155042 TTGGGCTTGTATACTCAATAATCTCAGTGCACAAGTTTGAAGATTTAATAGTACCCAGAT 154983
Query 111330 TCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGA 111368
| | || || || || ||||||| | ||||| | |||
Sbjct 154982 TTTGCTGATTGCTTTTTCTGTTGCAAGTATCCTAGAAGA 154944
>seq318
Length=266665
Score = 109 bits (120), Expect = 7e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729
||| |||||||| ||||| || || | ||| || |||||| || || ||||| || ||
Sbjct 55894 GTGTAGACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGTCAGTCCCGGCATTAGCCC 55953
Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789
|||||||||| ||| | || |||||||| |||||||||||| || ||||| || ||
Sbjct 55954 GCGCTTCTTCAGCCAGAATATCGCGCAGAAACTCCCGGAGAAGAAAATCCCCTCGACGCA 56013
Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAG 122817
|| ||||| | || || |||||||||
Sbjct 56014 AGCGAACGCGATCAGCCGCTCGGCGAAG 56041
>seq2451
Length=68748
Score = 105 bits (116), Expect = 8e-18
Identities = 158/223 (71%), Gaps = 5/223 (2%)
Strand=Plus/Minus
Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729
||| |||||||| ||||| || || | |||||| |||||| || || ||||| || ||
Sbjct 68149 GTGTAGACCCTCGTCTCGCGAGATCAATTCATTCGAGAAGGTGAGTCCCGGCATTAGCCC 68090
Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789
|||||||||| ||| | || ||| |||| |||||||||||| || |||| || ||
Sbjct 68089 GCGCTTCTTCAGCCAGAATATCGCGTAGAAACTCCCGGAGAAGAAAATCCCCTTGACGCA 68030
Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAG-GAGCGAGACTTTGCATCAAACCATTTCATTG 122848
| ||||| | || || ||||||||| || || | || | ||| || | |
Sbjct 68029 AACGAACGCTATCAGCCGCTCGGCGAAGCTCTCGGCAC----CGTCGATCCACTTGAGAG 67974
Query 122849 CCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891
|||| | ||||||||||| | || || || || | ||||||
Sbjct 67973 CCCAATCCGCCTTCTTCTTCACGCAGGGCACCGTGTCGATGGC 67931
>seq251
Length=297614
Score = 98.7 bits (108), Expect = 1e-15
Identities = 210/314 (67%), Gaps = 0/314 (0%)
Strand=Plus/Minus
Query 11501 TTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGT 11560
||||| |||||||| || | || ||||| | | |||||||||||||| || || |
Sbjct 249846 TTAGTTGCCGCAATGACAATGATACCAGTGTTACCCTCAAAGCCATCCATTTCTGTCAAA 249787
Query 11561 AATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGC 11620
| || |||| || || ||||| ||||||||| || | ||||| | | |||
Sbjct 249786 AGCTGGTTAAGAGTCTGCTCTCTTTCATCATTTCCTCCACCAATACCAGTTCCTCTCTGC 249727
Query 11621 TTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATT 11680
| || || |||||||| ||||| | || ||||| || || ||| || ||| |
Sbjct 249726 CTTCCAACGGCATCAATTTCATCCACAAATACAATGCAGGGAGCATTCTCCTTGGCCTTC 249667
Query 11681 TCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCG 11740
| || ||||| || || | |||||| || |||||||||||||| ||||| | |
Sbjct 249666 TTGAAAAGATCACGGACTCGAGAGGCACCAACTCCAACAAACATCTCAACAAATTCAGAA 249607
Query 11741 GCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 11800
| ||| || || || ||| | |||||| || || ||| || || || |||
Sbjct 249606 CCTGAGATGGAGAAAAAAGGCACACCAGCTTCACCTGCAATTGCTTTAGCTAGAAGAGTC 249547
Query 11801 TTTCCCGTACCTGG 11814
||||| || || ||
Sbjct 249546 TTTCCTGTGCCAGG 249533
>seq1699
Length=96573
Score = 82.4 bits (90), Expect = 1e-10
Identities = 92/121 (76%), Gaps = 3/121 (2%)
Strand=Plus/Minus
Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718
||||| || ||| || |||||||||| || || || ||||||||||| | ||||
Sbjct 23305 GCAAAATCACAGTGAAGGCCCTCATCTCTAGAGATCAGCTCATTTGAGAATGTCAAACCT 23246
Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAA--TGACCCGGAGAAGAAGA 122776
||||| || ||||||||||| | ||| ||||||| ||||| ||| || ||||||| |
Sbjct 23245 GGCATTAGTCCCCGCTTCTTAAGCCAGAAAATAGCACAGAAGCTGAACC-AAGAAGAAAA 23187
Query 122777 T 122777
|
Sbjct 23186 T 23186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627814002242400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |