Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1535 118 1e-21 seq318 109 7e-19 seq2451 105 8e-18 seq251 98.7 1e-15 seq1699 82.4 1e-10 >seq1535 Length=214281 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| || ||||| || || ||||| || || ||||| | || ||| ||||| | || Sbjct 153558 CTGAGGCCTTGGCGTTCCTGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTG 153499 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 ||||||| ||| |||||||| | |||||||||||| || | | ||| || || | || Sbjct 153498 GGACATCATGTGGTATGTCTGGATGACAGAATCAATATCATTCTTGTGAATTCCAACAGC 153439 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA 112119 |||| ||| ||||||| ||| || |||| | | | || | || | |||| || Sbjct 153438 AACCCTCATCAACATGTGCTGAGGCCTTTCAACAACTTTCCCTTGGACTTTTAGAAGGTA 153379 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | | | ||||||||||||| ||||||||| || ||||| |||| || Sbjct 153378 GGACCTTTCAAGGGTTTTGAACCCAAAGTAATCATAATCAAAGTCACG 153331 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| || |||||||| || | ||| ||||| || || | || || ||||| | || Sbjct 168711 CTGAGGCCTTGGTGTTCCTGGATTCAAGAGAGTCGGAGAAGCATGTGTGAACCATCTCTG 168652 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 ||||||| ||| |||||||| | |||||||||||| || | | ||| || || | || Sbjct 168651 GGACATCATGTGGTATGTCTGGATGACAGAATCAATATCATTCTTGTGAATTCCAACAGC 168592 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA 112119 |||| ||| ||||||| ||| || |||| | | | || | || | ||| | Sbjct 168591 AACCCTCATCAACATGTGCTGAGGCCTTTCAACAACTTTCCCTTGGACTTTTAGAACGGA 168532 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | | ||||||| ||||||| ||| ||||| || ||||| |||| || Sbjct 168531 GGACCTCTCAAGTGTTTTGAACCCAGAGTAATCATAATCAAAGTCACG 168484 Score = 82.4 bits (90), Expect = 1e-10 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 111211 CTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATC 111270 ||| || ||||||| |||| ||||| || ||||||||||| |||||||| || || | Sbjct 155101 CTCCTCCCTGACATATCTTGGTAGGGCAATCGATGCCAAATTACAAACAGCAGTTTC-TG 155043 Query 111271 CTTATC-TGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAAT 111329 | | ||| ||||| | ||| || || || ||||| ||| ||||| || |||| || Sbjct 155042 TTGGGCTTGTATACTCAATAATCTCAGTGCACAAGTTTGAAGATTTAATAGTACCCAGAT 154983 Query 111330 TCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGA 111368 | | || || || || ||||||| | ||||| | ||| Sbjct 154982 TTTGCTGATTGCTTTTTCTGTTGCAAGTATCCTAGAAGA 154944 >seq318 Length=266665 Score = 109 bits (120), Expect = 7e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| |||||||| ||||| || || | ||| || |||||| || || ||||| || || Sbjct 55894 GTGTAGACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGTCAGTCCCGGCATTAGCCC 55953 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||||| ||| | || |||||||| |||||||||||| || ||||| || || Sbjct 55954 GCGCTTCTTCAGCCAGAATATCGCGCAGAAACTCCCGGAGAAGAAAATCCCCTCGACGCA 56013 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || ||||| | || || ||||||||| Sbjct 56014 AGCGAACGCGATCAGCCGCTCGGCGAAG 56041 >seq2451 Length=68748 Score = 105 bits (116), Expect = 8e-18 Identities = 158/223 (71%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| |||||||| ||||| || || | |||||| |||||| || || ||||| || || Sbjct 68149 GTGTAGACCCTCGTCTCGCGAGATCAATTCATTCGAGAAGGTGAGTCCCGGCATTAGCCC 68090 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||||| ||| | || ||| |||| |||||||||||| || |||| || || Sbjct 68089 GCGCTTCTTCAGCCAGAATATCGCGTAGAAACTCCCGGAGAAGAAAATCCCCTTGACGCA 68030 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAG-GAGCGAGACTTTGCATCAAACCATTTCATTG 122848 | ||||| | || || ||||||||| || || | || | ||| || | | Sbjct 68029 AACGAACGCTATCAGCCGCTCGGCGAAGCTCTCGGCAC----CGTCGATCCACTTGAGAG 67974 Query 122849 CCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 |||| | ||||||||||| | || || || || | |||||| Sbjct 67973 CCCAATCCGCCTTCTTCTTCACGCAGGGCACCGTGTCGATGGC 67931 >seq251 Length=297614 Score = 98.7 bits (108), Expect = 1e-15 Identities = 210/314 (67%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 11501 TTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGT 11560 ||||| |||||||| || | || ||||| | | |||||||||||||| || || | Sbjct 249846 TTAGTTGCCGCAATGACAATGATACCAGTGTTACCCTCAAAGCCATCCATTTCTGTCAAA 249787 Query 11561 AATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGC 11620 | || |||| || || ||||| ||||||||| || | ||||| | | ||| Sbjct 249786 AGCTGGTTAAGAGTCTGCTCTCTTTCATCATTTCCTCCACCAATACCAGTTCCTCTCTGC 249727 Query 11621 TTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATT 11680 | || || |||||||| ||||| | || ||||| || || ||| || ||| | Sbjct 249726 CTTCCAACGGCATCAATTTCATCCACAAATACAATGCAGGGAGCATTCTCCTTGGCCTTC 249667 Query 11681 TCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCG 11740 | || ||||| || || | |||||| || |||||||||||||| ||||| | | Sbjct 249666 TTGAAAAGATCACGGACTCGAGAGGCACCAACTCCAACAAACATCTCAACAAATTCAGAA 249607 Query 11741 GCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 11800 | ||| || || || ||| | |||||| || || ||| || || || ||| Sbjct 249606 CCTGAGATGGAGAAAAAAGGCACACCAGCTTCACCTGCAATTGCTTTAGCTAGAAGAGTC 249547 Query 11801 TTTCCCGTACCTGG 11814 ||||| || || || Sbjct 249546 TTTCCTGTGCCAGG 249533 >seq1699 Length=96573 Score = 82.4 bits (90), Expect = 1e-10 Identities = 92/121 (76%), Gaps = 3/121 (2%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| || |||||||||| || || || ||||||||||| | |||| Sbjct 23305 GCAAAATCACAGTGAAGGCCCTCATCTCTAGAGATCAGCTCATTTGAGAATGTCAAACCT 23246 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAA--TGACCCGGAGAAGAAGA 122776 ||||| || ||||||||||| | ||| ||||||| ||||| ||| || ||||||| | Sbjct 23245 GGCATTAGTCCCCGCTTCTTAAGCCAGAAAATAGCACAGAAGCTGAACC-AAGAAGAAAA 23187 Query 122777 T 122777 | Sbjct 23186 T 23186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627814002242400